Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:151002638-152968986

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272 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lrdg2 4 129572018 to 151570093 21998075 QTL light induced retinal degeneration 2
Athsq1 4 137890537 to 151570093 13679556 QTL atherosclerosis susceptibility QTL 1
Per3 4 151003652 to 151044665 41013 - protein coding gene period circadian clock 3
Tssr44778 4 151004621 to 151004625 4 - TSS region transcription start site region 44778
Cpgi15363 4 151044087 to 151045104 1017 CpG island CpG island 15363
Tssr44779 4 151044564 to 151044691 127 - TSS region transcription start site region 44779
Gm38529 4 151044820 to 151059056 14236 + protein coding gene predicted gene, 38529
Vamp3 4 151047305 to 151057953 10648 - protein coding gene vesicle-associated membrane protein 3
Cpgi15364 4 151057260 to 151058414 1154 CpG island CpG island 15364
Tssr1387 4 151057613 to 151057627 14 + TSS region transcription start site region 1387
Tssr44780 4 151057895 to 151057906 11 - TSS region transcription start site region 44780
Tssr44781 4 151057933 to 151057969 36 - TSS region transcription start site region 44781
Camta1 4 151059523 to 151861768 802245 - protein coding gene calmodulin binding transcription activator 1
Tssr44782 4 151062294 to 151062320 26 - TSS region transcription start site region 44782
Tssr44783 4 151062813 to 151062839 26 - TSS region transcription start site region 44783
Cpgi15365 4 151088659 to 151088979 320 CpG island CpG island 15365
Gm13090 4 151089570 to 151091449 1879 + protein coding gene predicted gene 13090
Gm46899 4 151093361 to 151105732 12371 + lncRNA gene predicted gene, 46899
Cpgi15366 4 151107331 to 151109236 1905 CpG island CpG island 15366
Tssr44784 4 151108244 to 151108277 33 - TSS region transcription start site region 44784
Tssr44785 4 151108454 to 151108546 92 - TSS region transcription start site region 44785
Tssr44786 4 151123806 to 151123810 4 - TSS region transcription start site region 44786
Cpgi15367 4 151128465 to 151129701 1236 CpG island CpG island 15367
Tssr44787 4 151129348 to 151129389 41 - TSS region transcription start site region 44787
Tssr44788 4 151129435 to 151129452 17 - TSS region transcription start site region 44788
Tssr44789 4 151139521 to 151139577 56 - TSS region transcription start site region 44789
Cpgi15368 4 151139647 to 151139829 182 CpG island CpG island 15368
Cpgi15369 4 151143972 to 151145171 1199 CpG island CpG island 15369
Tssr44790 4 151154462 to 151154473 11 - TSS region transcription start site region 44790
Tssr44791 4 151154476 to 151154483 7 - TSS region transcription start site region 44791
Gm30422 4 151216029 to 151222340 6311 + lncRNA gene predicted gene, 30422
Gm45960 4 151222397 to 151233428 11031 + lncRNA gene predicted gene, 45960
Cpgi15370 4 151335040 to 151335393 353 CpG island CpG island 15370
Cpgi15371 4 151376340 to 151376497 157 CpG island CpG island 15371
Tssr40474 4 151376429 to 151376482 53 + TSS region transcription start site region 40474
4930589P08Rik 4 151376470 to 151379582 3112 + antisense lncRNA gene RIKEN cDNA 4930589P08 gene
Tssr40475 4 151405001 to 151405011 10 + TSS region transcription start site region 40475
Tssr40476 4 151405034 to 151405052 18 + TSS region transcription start site region 40476
Gm30344 4 151455152 to 151457744 2592 + lncRNA gene predicted gene, 30344
Cpgi15372 4 151483423 to 151483577 154 CpG island CpG island 15372
D4Mit180 4 151516916 to 151517027 111 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 180
4930429L21Rik 4 151557356 to 151558520 1164 unclassified gene RIKEN cDNA 4930429L21 gene
Tssr44792 4 151569017 to 151569051 34 - TSS region transcription start site region 44792
Scon2 4 151569994 to 151570093 99 QTL sucrose consumption 2
Ap3q 4 151569994 to 151570093 99 QTL alcohol preference 3 QTL
D4Mit42 4 151569994 to 151570093 99 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 42
Bmd7 4 151570093 to 89063832 -62506261 QTL bone mineral density 7
Gm38442 4 151638629 to 151723298 84669 - lncRNA gene predicted gene, 38442
Cpgi15373 4 151666672 to 151666845 173 CpG island CpG island 15373
Tssr40477 4 151685851 to 151685894 43 + TSS region transcription start site region 40477
Cpgi15374 4 151736938 to 151737352 414 CpG island CpG island 15374
Gm42357 4 151840553 to 151867789 27236 + lncRNA gene predicted gene, 42357
Tssr1388 4 151848138 to 151848139 1 - TSS region transcription start site region 1388
Tssr44793 4 151853264 to 151853268 4 - TSS region transcription start site region 44793
Cpgi15375 4 151860540 to 151862945 2405 CpG island CpG island 15375
Tssr44794 4 151861667 to 151861679 12 - TSS region transcription start site region 44794
Tssr44795 4 151861698 to 151861761 63 - TSS region transcription start site region 44795
Tssr44796 4 151861762 to 151861773 11 - TSS region transcription start site region 44796
Tssr40478 4 151862177 to 151862219 42 + TSS region transcription start site region 40478
Tssr40479 4 151862244 to 151862255 11 + TSS region transcription start site region 40479
9230110K08Rik 4 151862339 to 151863311 972 + lncRNA gene RIKEN cDNA 9230110K08 gene
Tssr40480 4 151862648 to 151862671 23 + TSS region transcription start site region 40480
Cpgi15376 4 151875212 to 151875518 306 CpG island CpG island 15376
Cpgi15377 4 151881835 to 151882159 324 CpG island CpG island 15377
Cpgi15378 4 151895253 to 151895507 254 CpG island CpG island 15378
Cpgi15379 4 151908101 to 151908341 240 CpG island CpG island 15379
Gm37141 4 151915993 to 151916414 421 - unclassified gene predicted gene, 37141
1110001D16Rik 4 151932377 to 151932850 473 unclassified gene RIKEN cDNA 1110001D16 gene
Cpgi15380 4 151933103 to 151934696 1593 CpG island CpG island 15380
Tssr40481 4 151933685 to 151933696 11 + TSS region transcription start site region 40481
Tssr40482 4 151933706 to 151933715 9 + TSS region transcription start site region 40482
Dnajc11 4 151933714 to 151981959 48245 + protein coding gene DnaJ heat shock protein family (Hsp40) member C11
Tssr40483 4 151933720 to 151933755 35 + TSS region transcription start site region 40483
Thap3 4 151982638 to 151988986 6348 - protein coding gene THAP domain containing, apoptosis associated protein 3
Cpgi15381 4 151988286 to 151989180 894 CpG island CpG island 15381
Tssr44797 4 151988950 to 151989011 61 - TSS region transcription start site region 44797
Tssr44798 4 151989014 to 151989025 11 - TSS region transcription start site region 44798
Phf13 4 151989631 to 151996179 6548 - protein coding gene PHD finger protein 13
Cpgi15382 4 151994466 to 151997159 2693 CpG island CpG island 15382
Tssr44799 4 151996113 to 151996243 130 - TSS region transcription start site region 44799
D4Ertd117e 4 152006471 to 152006715 244 DNA segment DNA segment, Chr 4, ERATO Doi 117, expressed
Gm9768 4 152006759 to 152009619 2860 - unclassified gene predicted gene 9768
Cpgi15383 4 152008360 to 152010344 1984 CpG island CpG island 15383
Klhl21 4 152008891 to 152017677 8786 + protein coding gene kelch-like 21
Tssr40484 4 152008894 to 152008928 34 + TSS region transcription start site region 40484
Tssr40485 4 152008936 to 152008948 12 + TSS region transcription start site region 40485
Tssr40486 4 152009012 to 152009023 11 + TSS region transcription start site region 40486
Tssr40487 4 152009031 to 152009053 22 + TSS region transcription start site region 40487
Tssr40488 4 152009072 to 152009083 11 + TSS region transcription start site region 40488
Zbtb48 4 152019774 to 152027671 7897 - protein coding gene zinc finger and BTB domain containing 48
Cpgi15384 4 152026838 to 152028324 1486 CpG island CpG island 15384
Tssr44800 4 152027601 to 152027624 23 - TSS region transcription start site region 44800
Tssr44801 4 152027632 to 152027684 52 - TSS region transcription start site region 44801
Tssr40489 4 152027802 to 152027825 23 + TSS region transcription start site region 40489
Tas1r1 4 152027914 to 152038490 10576 - protein coding gene taste receptor, type 1, member 1
Tssr44802 4 152031377 to 152031393 16 - TSS region transcription start site region 44802
Tssr44803 4 152033753 to 152033760 7 - TSS region transcription start site region 44803
Tssr44804 4 152038434 to 152038445 11 - TSS region transcription start site region 44804
Cpgi15385 4 152039123 to 152040221 1098 CpG island CpG island 15385
Tssr40490 4 152039315 to 152039356 41 + TSS region transcription start site region 40490
Nol9 4 152039321 to 152061494 22173 + protein coding gene nucleolar protein 9
Tssr40491 4 152039358 to 152039367 9 + TSS region transcription start site region 40491
Tssr40492 4 152058066 to 152058078 12 + TSS region transcription start site region 40492
Tssr1389 4 152065504 to 152065508 4 + TSS region transcription start site region 1389
Plekhg5 4 152072498 to 152115400 42902 + protein coding gene pleckstrin homology domain containing, family G (with RhoGef domain) member 5
Tssr40493 4 152076201 to 152076209 8 + TSS region transcription start site region 40493
Tssr40494 4 152076256 to 152076265 9 + TSS region transcription start site region 40494
Cpgi15386 4 152086237 to 152087354 1117 CpG island CpG island 15386
Tssr40495 4 152086830 to 152086893 63 + TSS region transcription start site region 40495
Cpgi15387 4 152096690 to 152096950 260 CpG island CpG island 15387
Tssr40496 4 152096698 to 152096716 18 + TSS region transcription start site region 40496
Tssr40497 4 152096736 to 152096782 46 + TSS region transcription start site region 40497
Cpgi15388 4 152107547 to 152108579 1032 CpG island CpG island 15388
Tssr40498 4 152107719 to 152107761 42 + TSS region transcription start site region 40498
Tssr40499 4 152108161 to 152108206 45 + TSS region transcription start site region 40499
Tssr40500 4 152113827 to 152113853 26 + TSS region transcription start site region 40500
Cpgi15389 4 152115776 to 152116297 521 CpG island CpG island 15389
Tnfrsf25 4 152115934 to 152120119 4185 + protein coding gene tumor necrosis factor receptor superfamily, member 25
Tssr40501 4 152116017 to 152116028 11 + TSS region transcription start site region 40501
Tssr40502 4 152116036 to 152116080 44 + TSS region transcription start site region 40502
Tssr40503 4 152116277 to 152116284 7 + TSS region transcription start site region 40503
Tssr40504 4 152116312 to 152116337 25 + TSS region transcription start site region 40504
Tssr40505 4 152116392 to 152116402 10 + TSS region transcription start site region 40505
Tssr40506 4 152116434 to 152116443 9 + TSS region transcription start site region 40506
Tssr44805 4 152117629 to 152117638 9 - TSS region transcription start site region 44805
Cpgi15390 4 152119459 to 152119932 473 CpG island CpG island 15390
Espn 4 152120331 to 152152371 32040 - protein coding gene espin
Tssr44806 4 152120653 to 152120670 17 - TSS region transcription start site region 44806
Cpgi15391 4 152120745 to 152121318 573 CpG island CpG island 15391
Tssr44807 4 152120793 to 152120801 8 - TSS region transcription start site region 44807
Tssr40507 4 152124586 to 152124613 27 + TSS region transcription start site region 40507
Tssr40508 4 152124863 to 152124891 28 + TSS region transcription start site region 40508
Cpgi15392 4 152124880 to 152126872 1992 CpG island CpG island 15392
Tssr40509 4 152125078 to 152125089 11 + TSS region transcription start site region 40509
Gm17852 4 152125114 to 152126863 1749 - pseudogene predicted gene, 17852
Tssr40510 4 152125123 to 152125133 10 + TSS region transcription start site region 40510
Tssr44808 4 152125992 to 152126001 9 - TSS region transcription start site region 44808
Tssr40511 4 152127162 to 152127165 3 + TSS region transcription start site region 40511
Tssr44809 4 152128858 to 152128898 40 - TSS region transcription start site region 44809
Tssr40512 4 152128988 to 152129003 15 + TSS region transcription start site region 40512
Tssr40513 4 152129041 to 152129052 11 + TSS region transcription start site region 40513
Cpgi15393 4 152130295 to 152132483 2188 CpG island CpG island 15393
Tssr44810 4 152131333 to 152131336 3 - TSS region transcription start site region 44810
Tssr44811 4 152131410 to 152131420 10 - TSS region transcription start site region 44811
Tssr44812 4 152131426 to 152131447 21 - TSS region transcription start site region 44812
Tssr44813 4 152131458 to 152131486 28 - TSS region transcription start site region 44813
Tssr44814 4 152131490 to 152131505 15 - TSS region transcription start site region 44814
Tssr44815 4 152131689 to 152131709 20 - TSS region transcription start site region 44815
Tssr44816 4 152131747 to 152131763 16 - TSS region transcription start site region 44816
Tssr44817 4 152131787 to 152131801 14 - TSS region transcription start site region 44817
Tssr44818 4 152131813 to 152131829 16 - TSS region transcription start site region 44818
Tssr44819 4 152131873 to 152131886 13 - TSS region transcription start site region 44819
Tssr44820 4 152132345 to 152132361 16 - TSS region transcription start site region 44820
Tssr44821 4 152132397 to 152132415 18 - TSS region transcription start site region 44821
Cpgi15394 4 152138316 to 152139218 902 CpG island CpG island 15394
Tssr44822 4 152138774 to 152138803 29 - TSS region transcription start site region 44822
Cpgi15395 4 152151809 to 152152554 745 CpG island CpG island 15395
Tssr44823 4 152152381 to 152152397 16 - TSS region transcription start site region 44823
Cpgi15396 4 152153557 to 152154138 581 CpG island CpG island 15396
Gm13077 4 152157007 to 152157490 483 - pseudogene predicted gene 13077
Cpgi15397 4 152158611 to 152160651 2040 CpG island CpG island 15397
Hes2 4 152158867 to 152162469 3602 + protein coding gene hes family bHLH transcription factor 2
Tssr40514 4 152159574 to 152159589 15 + TSS region transcription start site region 40514
Gm30622 4 152163762 to 152166419 2657 + lncRNA gene predicted gene, 30622
Cpgi15398 4 152165602 to 152165900 298 CpG island CpG island 15398
Cpgi15399 4 152170589 to 152170898 309 CpG island CpG island 15399
Cpgi15400 4 152177438 to 152178902 1464 CpG island CpG island 15400
Tssr40515 4 152177812 to 152177827 15 + TSS region transcription start site region 40515
Tssr40516 4 152177945 to 152177951 6 + TSS region transcription start site region 40516
Tssr40517 4 152177957 to 152178013 56 + TSS region transcription start site region 40517
Tssr40518 4 152178016 to 152178030 14 + TSS region transcription start site region 40518
Tssr40519 4 152178035 to 152178044 9 + TSS region transcription start site region 40519
Tssr44824 4 152178036 to 152178076 40 - TSS region transcription start site region 44824
Tssr40520 4 152178105 to 152178112 7 + TSS region transcription start site region 40520
Tssr40521 4 152178126 to 152178166 40 + TSS region transcription start site region 40521
Acot7 4 152178134 to 152271855 93721 + protein coding gene acyl-CoA thioesterase 7
Tssr40522 4 152178173 to 152178208 35 + TSS region transcription start site region 40522
Tssr40523 4 152178210 to 152178230 20 + TSS region transcription start site region 40523
Tssr40524 4 152178237 to 152178259 22 + TSS region transcription start site region 40524
Tssr40525 4 152185995 to 152186006 11 + TSS region transcription start site region 40525
Tssr40526 4 152186054 to 152186094 40 + TSS region transcription start site region 40526
Tssr40527 4 152186179 to 152186206 27 + TSS region transcription start site region 40527
Tssr40528 4 152190048 to 152190080 32 + TSS region transcription start site region 40528
Tssr40529 4 152190504 to 152190530 26 + TSS region transcription start site region 40529
Tssr40530 4 152199805 to 152199821 16 + TSS region transcription start site region 40530
Tssr40531 4 152199822 to 152199872 50 + TSS region transcription start site region 40531
Tssr1390 4 152199889 to 152199899 10 + TSS region transcription start site region 1390
Tssr40532 4 152199996 to 152200039 43 + TSS region transcription start site region 40532
Gm27500 4 152201807 to 152202142 335 - unclassified non-coding RNA gene predicted gene, 27500
Gm13096 4 152203926 to 152204467 541 + sense intronic lncRNA gene predicted gene 13096
Tssr40533 4 152217247 to 152217254 7 + TSS region transcription start site region 40533
Tssr1391 4 152224342 to 152224383 41 + TSS region transcription start site region 1391
Tssr40534 4 152241968 to 152241977 9 + TSS region transcription start site region 40534
Tssr40535 4 152242014 to 152242023 9 + TSS region transcription start site region 40535
Cpgi15401 4 152273565 to 152275117 1552 CpG island CpG island 15401
Tssr40536 4 152274090 to 152274163 73 + TSS region transcription start site region 40536
Tssr40537 4 152274191 to 152274232 41 + TSS region transcription start site region 40537
Gpr153 4 152274232 to 152285337 11105 + protein coding gene G protein-coupled receptor 153
Cpgi15402 4 152279104 to 152279394 290 CpG island CpG island 15402
Cpgi15403 4 152282382 to 152284072 1690 CpG island CpG island 15403