Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:150996916-152037027

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99 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lrdg2 4 129572018 to 151570093 21998075 QTL light induced retinal degeneration 2
Athsq1 4 137890537 to 151570093 13679556 QTL atherosclerosis susceptibility QTL 1
Tssr40473 4 150997081 to 150997088 7 + TSS region transcription start site region 40473
Uts2 4 150997097 to 151001810 4713 + protein coding gene urotensin 2
Per3 4 151003652 to 151044665 41013 - protein coding gene period circadian clock 3
Tssr44778 4 151004621 to 151004625 4 - TSS region transcription start site region 44778
Cpgi15363 4 151044087 to 151045104 1017 CpG island CpG island 15363
Tssr44779 4 151044564 to 151044691 127 - TSS region transcription start site region 44779
Gm38529 4 151044820 to 151059056 14236 + protein coding gene predicted gene, 38529
Vamp3 4 151047305 to 151057953 10648 - protein coding gene vesicle-associated membrane protein 3
Cpgi15364 4 151057260 to 151058414 1154 CpG island CpG island 15364
Tssr1387 4 151057613 to 151057627 14 + TSS region transcription start site region 1387
Tssr44780 4 151057895 to 151057906 11 - TSS region transcription start site region 44780
Tssr44781 4 151057933 to 151057969 36 - TSS region transcription start site region 44781
Camta1 4 151059523 to 151861768 802245 - protein coding gene calmodulin binding transcription activator 1
Tssr44782 4 151062294 to 151062320 26 - TSS region transcription start site region 44782
Tssr44783 4 151062813 to 151062839 26 - TSS region transcription start site region 44783
Cpgi15365 4 151088659 to 151088979 320 CpG island CpG island 15365
Gm13090 4 151089570 to 151091449 1879 + protein coding gene predicted gene 13090
Gm46899 4 151093361 to 151105732 12371 + lncRNA gene predicted gene, 46899
Cpgi15366 4 151107331 to 151109236 1905 CpG island CpG island 15366
Tssr44784 4 151108244 to 151108277 33 - TSS region transcription start site region 44784
Tssr44785 4 151108454 to 151108546 92 - TSS region transcription start site region 44785
Tssr44786 4 151123806 to 151123810 4 - TSS region transcription start site region 44786
Cpgi15367 4 151128465 to 151129701 1236 CpG island CpG island 15367
Tssr44787 4 151129348 to 151129389 41 - TSS region transcription start site region 44787
Tssr44788 4 151129435 to 151129452 17 - TSS region transcription start site region 44788
Tssr44789 4 151139521 to 151139577 56 - TSS region transcription start site region 44789
Cpgi15368 4 151139647 to 151139829 182 CpG island CpG island 15368
Cpgi15369 4 151143972 to 151145171 1199 CpG island CpG island 15369
Tssr44790 4 151154462 to 151154473 11 - TSS region transcription start site region 44790
Tssr44791 4 151154476 to 151154483 7 - TSS region transcription start site region 44791
Gm30422 4 151216029 to 151222340 6311 + lncRNA gene predicted gene, 30422
Gm45960 4 151222397 to 151233428 11031 + lncRNA gene predicted gene, 45960
Cpgi15370 4 151335040 to 151335393 353 CpG island CpG island 15370
Cpgi15371 4 151376340 to 151376497 157 CpG island CpG island 15371
Tssr40474 4 151376429 to 151376482 53 + TSS region transcription start site region 40474
4930589P08Rik 4 151376470 to 151379582 3112 + antisense lncRNA gene RIKEN cDNA 4930589P08 gene
Tssr40475 4 151405001 to 151405011 10 + TSS region transcription start site region 40475
Tssr40476 4 151405034 to 151405052 18 + TSS region transcription start site region 40476
Gm30344 4 151455152 to 151457744 2592 + lncRNA gene predicted gene, 30344
Cpgi15372 4 151483423 to 151483577 154 CpG island CpG island 15372
D4Mit180 4 151516916 to 151517027 111 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 180
4930429L21Rik 4 151557356 to 151558520 1164 unclassified gene RIKEN cDNA 4930429L21 gene
Tssr44792 4 151569017 to 151569051 34 - TSS region transcription start site region 44792
D4Mit42 4 151569994 to 151570093 99 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 42
Ap3q 4 151569994 to 151570093 99 QTL alcohol preference 3 QTL
Scon2 4 151569994 to 151570093 99 QTL sucrose consumption 2
Bmd7 4 151570093 to 89063832 -62506261 QTL bone mineral density 7
Gm38442 4 151638629 to 151723298 84669 - lncRNA gene predicted gene, 38442
Cpgi15373 4 151666672 to 151666845 173 CpG island CpG island 15373
Tssr40477 4 151685851 to 151685894 43 + TSS region transcription start site region 40477
Cpgi15374 4 151736938 to 151737352 414 CpG island CpG island 15374
Gm42357 4 151840553 to 151867789 27236 + lncRNA gene predicted gene, 42357
Tssr1388 4 151848138 to 151848139 1 - TSS region transcription start site region 1388
Tssr44793 4 151853264 to 151853268 4 - TSS region transcription start site region 44793
Cpgi15375 4 151860540 to 151862945 2405 CpG island CpG island 15375
Tssr44794 4 151861667 to 151861679 12 - TSS region transcription start site region 44794
Tssr44795 4 151861698 to 151861761 63 - TSS region transcription start site region 44795
Tssr44796 4 151861762 to 151861773 11 - TSS region transcription start site region 44796
Tssr40478 4 151862177 to 151862219 42 + TSS region transcription start site region 40478
Tssr40479 4 151862244 to 151862255 11 + TSS region transcription start site region 40479
9230110K08Rik 4 151862339 to 151863311 972 + lncRNA gene RIKEN cDNA 9230110K08 gene
Tssr40480 4 151862648 to 151862671 23 + TSS region transcription start site region 40480
Cpgi15376 4 151875212 to 151875518 306 CpG island CpG island 15376
Cpgi15377 4 151881835 to 151882159 324 CpG island CpG island 15377
Cpgi15378 4 151895253 to 151895507 254 CpG island CpG island 15378
Cpgi15379 4 151908101 to 151908341 240 CpG island CpG island 15379
Gm37141 4 151915993 to 151916414 421 - unclassified gene predicted gene, 37141
1110001D16Rik 4 151932377 to 151932850 473 unclassified gene RIKEN cDNA 1110001D16 gene
Cpgi15380 4 151933103 to 151934696 1593 CpG island CpG island 15380
Tssr40481 4 151933685 to 151933696 11 + TSS region transcription start site region 40481
Tssr40482 4 151933706 to 151933715 9 + TSS region transcription start site region 40482
Dnajc11 4 151933714 to 151981959 48245 + protein coding gene DnaJ heat shock protein family (Hsp40) member C11
Tssr40483 4 151933720 to 151933755 35 + TSS region transcription start site region 40483
Thap3 4 151982638 to 151988986 6348 - protein coding gene THAP domain containing, apoptosis associated protein 3
Cpgi15381 4 151988286 to 151989180 894 CpG island CpG island 15381
Tssr44797 4 151988950 to 151989011 61 - TSS region transcription start site region 44797
Tssr44798 4 151989014 to 151989025 11 - TSS region transcription start site region 44798
Phf13 4 151989631 to 151996179 6548 - protein coding gene PHD finger protein 13
Cpgi15382 4 151994466 to 151997159 2693 CpG island CpG island 15382
Tssr44799 4 151996113 to 151996243 130 - TSS region transcription start site region 44799
D4Ertd117e 4 152006471 to 152006715 244 DNA segment DNA segment, Chr 4, ERATO Doi 117, expressed
Gm9768 4 152006759 to 152009619 2860 - unclassified gene predicted gene 9768
Cpgi15383 4 152008360 to 152010344 1984 CpG island CpG island 15383
Klhl21 4 152008891 to 152017677 8786 + protein coding gene kelch-like 21
Tssr40484 4 152008894 to 152008928 34 + TSS region transcription start site region 40484
Tssr40485 4 152008936 to 152008948 12 + TSS region transcription start site region 40485
Tssr40486 4 152009012 to 152009023 11 + TSS region transcription start site region 40486
Tssr40487 4 152009031 to 152009053 22 + TSS region transcription start site region 40487
Tssr40488 4 152009072 to 152009083 11 + TSS region transcription start site region 40488
Zbtb48 4 152019774 to 152027671 7897 - protein coding gene zinc finger and BTB domain containing 48
Cpgi15384 4 152026838 to 152028324 1486 CpG island CpG island 15384
Tssr44800 4 152027601 to 152027624 23 - TSS region transcription start site region 44800
Tssr44801 4 152027632 to 152027684 52 - TSS region transcription start site region 44801
Tssr40489 4 152027802 to 152027825 23 + TSS region transcription start site region 40489
Tas1r1 4 152027914 to 152038490 10576 - protein coding gene taste receptor, type 1, member 1
Tssr44802 4 152031377 to 152031393 16 - TSS region transcription start site region 44802
Tssr44803 4 152033753 to 152033760 7 - TSS region transcription start site region 44803