Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:150689851-155061016

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612 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lrdg2 4 129572018 to 151570093 21998075 QTL light induced retinal degeneration 2
Bcmd2 4 133427367 to 150704994 17277627 QTL B cell maturation defect 2
Athsq1 4 137890537 to 151570093 13679556 QTL atherosclerosis susceptibility QTL 1
Gm36600 4 150704548 to 150739130 34582 + lncRNA gene predicted gene, 36600
Del(4D4Mit190-D4Mit51)2Aam 4 150704851 to 155046016 4341165 chromosomal deletion deletion, Chr 4, Alea A Mills 2
Dp(4D4Mit190-D4Mit51)1Aam 4 150704851 to 155046016 4341165 chromosomal duplication duplication, Chr 4, Alea A Mills 1
D4Mit190 4 150704851 to 150704994 143 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 190
Tssr40437 4 150705205 to 150705216 11 + TSS region transcription start site region 40437
Tssr40438 4 150710872 to 150710876 4 + TSS region transcription start site region 40438
Tssr44754 4 150717918 to 150717961 43 - TSS region transcription start site region 44754
Cpgi15356 4 150722218 to 150722401 183 CpG island CpG island 15356
Tssr40439 4 150748347 to 150748353 6 + TSS region transcription start site region 40439
Gm36806 4 150776226 to 150818152 41926 - lncRNA gene predicted gene, 36806
Tssr44755 4 150781418 to 150781422 4 - TSS region transcription start site region 44755
Tssr1385 4 150797955 to 150797957 2 - TSS region transcription start site region 1385
Tssr1386 4 150799591 to 150799611 20 - TSS region transcription start site region 1386
Gm42356 4 150807722 to 150809721 1999 + lncRNA gene predicted gene, 42356
Tssr40440 4 150807775 to 150807784 9 + TSS region transcription start site region 40440
Tssr40441 4 150807789 to 150807805 16 + TSS region transcription start site region 40441
Gm13049 4 150825733 to 150839575 13842 + lincRNA gene predicted gene 13049
1700045H11Rik 4 150828225 to 150854949 26724 - antisense lncRNA gene RIKEN cDNA 1700045H11 gene
Cpgi15357 4 150836503 to 150837149 646 CpG island CpG island 15357
Tssr40442 4 150847081 to 150847104 23 + TSS region transcription start site region 40442
Rps15a-ps3 4 150847113 to 150847507 394 + pseudogene ribosomal protein S15A, pseudogene 3
Tssr40443 4 150852722 to 150852730 8 + TSS region transcription start site region 40443
Tssr40444 4 150853769 to 150853788 19 + TSS region transcription start site region 40444
Tssr40445 4 150853795 to 150853812 17 + TSS region transcription start site region 40445
Errfi1 4 150853919 to 150868892 14973 + protein coding gene ERBB receptor feedback inhibitor 1
Tssr40446 4 150854016 to 150854050 34 + TSS region transcription start site region 40446
Tssr40447 4 150854053 to 150854063 10 + TSS region transcription start site region 40447
Cpgi15358 4 150854186 to 150855750 1564 CpG island CpG island 15358
Tssr40448 4 150854370 to 150854385 15 + TSS region transcription start site region 40448
Tssr44756 4 150854930 to 150854941 11 - TSS region transcription start site region 44756
Tssr40449 4 150855064 to 150855081 17 + TSS region transcription start site region 40449
Tssr40450 4 150865373 to 150865408 35 + TSS region transcription start site region 40450
Tssr40451 4 150866376 to 150866396 20 + TSS region transcription start site region 40451
Tssr40452 4 150866472 to 150866489 17 + TSS region transcription start site region 40452
Tssr40453 4 150866553 to 150866573 20 + TSS region transcription start site region 40453
Tssr40454 4 150866807 to 150866832 25 + TSS region transcription start site region 40454
Tssr44757 4 150866852 to 150866875 23 - TSS region transcription start site region 44757
Tssr40455 4 150866966 to 150866988 22 + TSS region transcription start site region 40455
Tssr40456 4 150867047 to 150867072 25 + TSS region transcription start site region 40456
Tssr40457 4 150867089 to 150867101 12 + TSS region transcription start site region 40457
Tssr40458 4 150867269 to 150867314 45 + TSS region transcription start site region 40458
Tssr40459 4 150868282 to 150868300 18 + TSS region transcription start site region 40459
Cpgi15359 4 150878976 to 150879313 337 CpG island CpG island 15359
Tssr44758 4 150879590 to 150879600 10 - TSS region transcription start site region 44758
Cpgi15360 4 150879838 to 150880196 358 CpG island CpG island 15360
Park7 4 150897133 to 150909921 12788 - protein coding gene Parkinson disease (autosomal recessive, early onset) 7
Tssr44759 4 150902073 to 150902086 13 - TSS region transcription start site region 44759
Tssr44760 4 150902091 to 150902098 7 - TSS region transcription start site region 44760
Tssr44761 4 150902100 to 150902119 19 - TSS region transcription start site region 44761
Tssr44762 4 150902127 to 150902147 20 - TSS region transcription start site region 44762
Tssr44763 4 150902155 to 150902180 25 - TSS region transcription start site region 44763
Tssr44764 4 150902190 to 150902198 8 - TSS region transcription start site region 44764
Tssr44765 4 150902224 to 150902246 22 - TSS region transcription start site region 44765
Tssr44766 4 150907205 to 150907247 42 - TSS region transcription start site region 44766
Tssr44767 4 150907323 to 150907330 7 - TSS region transcription start site region 44767
Tssr44768 4 150907361 to 150907375 14 - TSS region transcription start site region 44768
Tssr44769 4 150909428 to 150909459 31 - TSS region transcription start site region 44769
Cpgi15361 4 150909445 to 150910388 943 CpG island CpG island 15361
Tssr44770 4 150909780 to 150909791 11 - TSS region transcription start site region 44770
Tssr44771 4 150909812 to 150909884 72 - TSS region transcription start site region 44771
Tssr40460 4 150910041 to 150910091 50 + TSS region transcription start site region 40460
Cpgi15362 4 150913999 to 150914817 818 CpG island CpG island 15362
Tssr44772 4 150914401 to 150914480 79 - TSS region transcription start site region 44772
Tssr40461 4 150914584 to 150914601 17 + TSS region transcription start site region 40461
Tssr44773 4 150915183 to 150915191 8 - TSS region transcription start site region 44773
Tssr44774 4 150915281 to 150915290 9 - TSS region transcription start site region 44774
Tssr40462 4 150919573 to 150919576 3 + TSS region transcription start site region 40462
Tssr40463 4 150920154 to 150920197 43 + TSS region transcription start site region 40463
Tnfrsf9 4 150920155 to 150946104 25949 + protein coding gene tumor necrosis factor receptor superfamily, member 9
Tssr40464 4 150924654 to 150924664 10 + TSS region transcription start site region 40464
Tssr40465 4 150927306 to 150927328 22 + TSS region transcription start site region 40465
Tssr40466 4 150928019 to 150928035 16 + TSS region transcription start site region 40466
Tssr40467 4 150929695 to 150929708 13 + TSS region transcription start site region 40467
Tssr40468 4 150929710 to 150929757 47 + TSS region transcription start site region 40468
Tssr40469 4 150932382 to 150932393 11 + TSS region transcription start site region 40469
Tssr40470 4 150935742 to 150935755 13 + TSS region transcription start site region 40470
Tssr44775 4 150944792 to 150944808 16 - TSS region transcription start site region 44775
Tssr44776 4 150944840 to 150944865 25 - TSS region transcription start site region 44776
Tssr44777 4 150944948 to 150944964 16 - TSS region transcription start site region 44777
Tssr40471 4 150944987 to 150945000 13 + TSS region transcription start site region 40471
Tssr40472 4 150945331 to 150945337 6 + TSS region transcription start site region 40472
D4Mit63 4 150961780 to 150961898 118 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 63
Gm23405 4 150964735 to 150964894 159 + snRNA gene predicted gene, 23405
Gm30120 4 150965587 to 150980888 15301 - lncRNA gene predicted gene, 30120
5330422M15Rik 4 150978642 to 150979962 1320 unclassified gene RIKEN cDNA 5330422M15 gene
Tssr40473 4 150997081 to 150997088 7 + TSS region transcription start site region 40473
Uts2 4 150997097 to 151001810 4713 + protein coding gene urotensin 2
Per3 4 151003652 to 151044665 41013 - protein coding gene period circadian clock 3
Tssr44778 4 151004621 to 151004625 4 - TSS region transcription start site region 44778
Cpgi15363 4 151044087 to 151045104 1017 CpG island CpG island 15363
Tssr44779 4 151044564 to 151044691 127 - TSS region transcription start site region 44779
Gm38529 4 151044820 to 151059056 14236 + protein coding gene predicted gene, 38529
Vamp3 4 151047305 to 151057953 10648 - protein coding gene vesicle-associated membrane protein 3
Cpgi15364 4 151057260 to 151058414 1154 CpG island CpG island 15364
Tssr1387 4 151057613 to 151057627 14 + TSS region transcription start site region 1387
Tssr44780 4 151057895 to 151057906 11 - TSS region transcription start site region 44780
Tssr44781 4 151057933 to 151057969 36 - TSS region transcription start site region 44781
Camta1 4 151059523 to 151861768 802245 - protein coding gene calmodulin binding transcription activator 1
Tssr44782 4 151062294 to 151062320 26 - TSS region transcription start site region 44782
Tssr44783 4 151062813 to 151062839 26 - TSS region transcription start site region 44783
Cpgi15365 4 151088659 to 151088979 320 CpG island CpG island 15365
Gm13090 4 151089570 to 151091449 1879 + protein coding gene predicted gene 13090
Gm46899 4 151093361 to 151105732 12371 + lncRNA gene predicted gene, 46899
Cpgi15366 4 151107331 to 151109236 1905 CpG island CpG island 15366
Tssr44784 4 151108244 to 151108277 33 - TSS region transcription start site region 44784
Tssr44785 4 151108454 to 151108546 92 - TSS region transcription start site region 44785
Tssr44786 4 151123806 to 151123810 4 - TSS region transcription start site region 44786
Cpgi15367 4 151128465 to 151129701 1236 CpG island CpG island 15367
Tssr44787 4 151129348 to 151129389 41 - TSS region transcription start site region 44787
Tssr44788 4 151129435 to 151129452 17 - TSS region transcription start site region 44788
Tssr44789 4 151139521 to 151139577 56 - TSS region transcription start site region 44789
Cpgi15368 4 151139647 to 151139829 182 CpG island CpG island 15368
Cpgi15369 4 151143972 to 151145171 1199 CpG island CpG island 15369
Tssr44790 4 151154462 to 151154473 11 - TSS region transcription start site region 44790
Tssr44791 4 151154476 to 151154483 7 - TSS region transcription start site region 44791
Gm30422 4 151216029 to 151222340 6311 + lncRNA gene predicted gene, 30422
Gm45960 4 151222397 to 151233428 11031 + lncRNA gene predicted gene, 45960
Cpgi15370 4 151335040 to 151335393 353 CpG island CpG island 15370
Cpgi15371 4 151376340 to 151376497 157 CpG island CpG island 15371
Tssr40474 4 151376429 to 151376482 53 + TSS region transcription start site region 40474
4930589P08Rik 4 151376470 to 151379582 3112 + antisense lncRNA gene RIKEN cDNA 4930589P08 gene
Tssr40475 4 151405001 to 151405011 10 + TSS region transcription start site region 40475
Tssr40476 4 151405034 to 151405052 18 + TSS region transcription start site region 40476
Gm30344 4 151455152 to 151457744 2592 + lncRNA gene predicted gene, 30344
Cpgi15372 4 151483423 to 151483577 154 CpG island CpG island 15372
D4Mit180 4 151516916 to 151517027 111 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 180
4930429L21Rik 4 151557356 to 151558520 1164 unclassified gene RIKEN cDNA 4930429L21 gene
Tssr44792 4 151569017 to 151569051 34 - TSS region transcription start site region 44792
Ap3q 4 151569994 to 151570093 99 QTL alcohol preference 3 QTL
Scon2 4 151569994 to 151570093 99 QTL sucrose consumption 2
D4Mit42 4 151569994 to 151570093 99 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 42
Bmd7 4 151570093 to 89063832 -62506261 QTL bone mineral density 7
Gm38442 4 151638629 to 151723298 84669 - lncRNA gene predicted gene, 38442
Cpgi15373 4 151666672 to 151666845 173 CpG island CpG island 15373
Tssr40477 4 151685851 to 151685894 43 + TSS region transcription start site region 40477
Cpgi15374 4 151736938 to 151737352 414 CpG island CpG island 15374
Gm42357 4 151840553 to 151867789 27236 + lncRNA gene predicted gene, 42357
Tssr1388 4 151848138 to 151848139 1 - TSS region transcription start site region 1388
Tssr44793 4 151853264 to 151853268 4 - TSS region transcription start site region 44793
Cpgi15375 4 151860540 to 151862945 2405 CpG island CpG island 15375
Tssr44794 4 151861667 to 151861679 12 - TSS region transcription start site region 44794
Tssr44795 4 151861698 to 151861761 63 - TSS region transcription start site region 44795
Tssr44796 4 151861762 to 151861773 11 - TSS region transcription start site region 44796
Tssr40478 4 151862177 to 151862219 42 + TSS region transcription start site region 40478
Tssr40479 4 151862244 to 151862255 11 + TSS region transcription start site region 40479
9230110K08Rik 4 151862339 to 151863311 972 + lncRNA gene RIKEN cDNA 9230110K08 gene
Tssr40480 4 151862648 to 151862671 23 + TSS region transcription start site region 40480
Cpgi15376 4 151875212 to 151875518 306 CpG island CpG island 15376
Cpgi15377 4 151881835 to 151882159 324 CpG island CpG island 15377
Cpgi15378 4 151895253 to 151895507 254 CpG island CpG island 15378
Cpgi15379 4 151908101 to 151908341 240 CpG island CpG island 15379
Gm37141 4 151915993 to 151916414 421 - unclassified gene predicted gene, 37141
1110001D16Rik 4 151932377 to 151932850 473 unclassified gene RIKEN cDNA 1110001D16 gene
Cpgi15380 4 151933103 to 151934696 1593 CpG island CpG island 15380
Tssr40481 4 151933685 to 151933696 11 + TSS region transcription start site region 40481
Tssr40482 4 151933706 to 151933715 9 + TSS region transcription start site region 40482
Dnajc11 4 151933714 to 151981959 48245 + protein coding gene DnaJ heat shock protein family (Hsp40) member C11
Tssr40483 4 151933720 to 151933755 35 + TSS region transcription start site region 40483
Thap3 4 151982638 to 151988986 6348 - protein coding gene THAP domain containing, apoptosis associated protein 3
Cpgi15381 4 151988286 to 151989180 894 CpG island CpG island 15381
Tssr44797 4 151988950 to 151989011 61 - TSS region transcription start site region 44797
Tssr44798 4 151989014 to 151989025 11 - TSS region transcription start site region 44798
Phf13 4 151989631 to 151996179 6548 - protein coding gene PHD finger protein 13
Cpgi15382 4 151994466 to 151997159 2693 CpG island CpG island 15382
Tssr44799 4 151996113 to 151996243 130 - TSS region transcription start site region 44799
D4Ertd117e 4 152006471 to 152006715 244 DNA segment DNA segment, Chr 4, ERATO Doi 117, expressed
Gm9768 4 152006759 to 152009619 2860 - unclassified gene predicted gene 9768
Cpgi15383 4 152008360 to 152010344 1984 CpG island CpG island 15383
Klhl21 4 152008891 to 152017677 8786 + protein coding gene kelch-like 21
Tssr40484 4 152008894 to 152008928 34 + TSS region transcription start site region 40484
Tssr40485 4 152008936 to 152008948 12 + TSS region transcription start site region 40485
Tssr40486 4 152009012 to 152009023 11 + TSS region transcription start site region 40486
Tssr40487 4 152009031 to 152009053 22 + TSS region transcription start site region 40487
Tssr40488 4 152009072 to 152009083 11 + TSS region transcription start site region 40488
Zbtb48 4 152019774 to 152027671 7897 - protein coding gene zinc finger and BTB domain containing 48
Cpgi15384 4 152026838 to 152028324 1486 CpG island CpG island 15384
Tssr44800 4 152027601 to 152027624 23 - TSS region transcription start site region 44800
Tssr44801 4 152027632 to 152027684 52 - TSS region transcription start site region 44801
Tssr40489 4 152027802 to 152027825 23 + TSS region transcription start site region 40489
Tas1r1 4 152027914 to 152038490 10576 - protein coding gene taste receptor, type 1, member 1
Tssr44802 4 152031377 to 152031393 16 - TSS region transcription start site region 44802
Tssr44803 4 152033753 to 152033760 7 - TSS region transcription start site region 44803
Tssr44804 4 152038434 to 152038445 11 - TSS region transcription start site region 44804
Cpgi15385 4 152039123 to 152040221 1098 CpG island CpG island 15385
Tssr40490 4 152039315 to 152039356 41 + TSS region transcription start site region 40490
Nol9 4 152039321 to 152061494 22173 + protein coding gene nucleolar protein 9
Tssr40491 4 152039358 to 152039367 9 + TSS region transcription start site region 40491
Tssr40492 4 152058066 to 152058078 12 + TSS region transcription start site region 40492
Tssr1389 4 152065504 to 152065508 4 + TSS region transcription start site region 1389
Plekhg5 4 152072498 to 152115400 42902 + protein coding gene pleckstrin homology domain containing, family G (with RhoGef domain) member 5
Tssr40493 4 152076201 to 152076209 8 + TSS region transcription start site region 40493
Tssr40494 4 152076256 to 152076265 9 + TSS region transcription start site region 40494
Cpgi15386 4 152086237 to 152087354 1117 CpG island CpG island 15386
Tssr40495 4 152086830 to 152086893 63 + TSS region transcription start site region 40495
Cpgi15387 4 152096690 to 152096950 260 CpG island CpG island 15387
Tssr40496 4 152096698 to 152096716 18 + TSS region transcription start site region 40496
Tssr40497 4 152096736 to 152096782 46 + TSS region transcription start site region 40497