Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:150311869-150823544

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84 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lmb1 4 124371164 to 150592401 26221237 QTL lupus in MRL and B6 F2 cross, QTL 1
Bcmd2 4 133427367 to 150704994 17277627 QTL B cell maturation defect 2
Tb2r1 4 137946694 to 150592401 12645707 QTL TGF-beta2 responsiveness 1
Rere 4 150281646 to 150621966 340320 + protein coding gene arginine glutamic acid dipeptide (RE) repeats
Gm13092 4 150315177 to 150315436 259 - pseudogene predicted gene 13092
Tssr44740 4 150315518 to 150315561 43 - TSS region transcription start site region 44740
Gm23209 4 150321193 to 150321302 109 + snRNA gene predicted gene, 23209
D030004A10Rik 4 150328702 to 150334150 5448 unclassified gene RIKEN cDNA D030004A10 gene
Cpgi15351 4 150371656 to 150372329 673 CpG island CpG island 15351
Tssr40407 4 150371857 to 150371927 70 + TSS region transcription start site region 40407
Tssr40408 4 150371935 to 150371956 21 + TSS region transcription start site region 40408
Tssr40409 4 150372143 to 150372186 43 + TSS region transcription start site region 40409
Tssr40410 4 150406617 to 150406643 26 + TSS region transcription start site region 40410
E230012J19Rik 4 150416262 to 150418018 1756 unclassified gene RIKEN cDNA E230012J19 gene
Tssr40411 4 150416920 to 150416925 5 + TSS region transcription start site region 40411
9430064G09Rik 4 150478018 to 150480170 2152 unclassified gene RIKEN cDNA 9430064G09 gene
Tssr40412 4 150488368 to 150488444 76 + TSS region transcription start site region 40412
Gm42355 4 150511945 to 150516396 4451 + protein coding gene predicted gene, 42355
D4Mit1002 4 150536625 to 150536761 136 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 1002
Tssr44741 4 150544991 to 150545032 41 - TSS region transcription start site region 44741
Tssr40413 4 150548893 to 150548898 5 + TSS region transcription start site region 40413
Tssr44742 4 150556501 to 150556518 17 - TSS region transcription start site region 44742
Tssr40414 4 150563507 to 150563510 3 + TSS region transcription start site region 40414
Tssr40415 4 150566455 to 150566494 39 + TSS region transcription start site region 40415
Tssr40416 4 150566558 to 150566584 26 + TSS region transcription start site region 40416
Tssr44743 4 150566864 to 150566876 12 - TSS region transcription start site region 44743
Gm13091 4 150566869 to 150568544 1675 - antisense lncRNA gene predicted gene 13091
Tssr44744 4 150568700 to 150568733 33 - TSS region transcription start site region 44744
Tssr40417 4 150568816 to 150568835 19 + TSS region transcription start site region 40417
Cpgi15352 4 150569054 to 150570100 1046 CpG island CpG island 15352
Tssr40418 4 150569217 to 150569242 25 + TSS region transcription start site region 40418
Tssr40419 4 150569249 to 150569278 29 + TSS region transcription start site region 40419
Tssr40420 4 150569484 to 150569496 12 + TSS region transcription start site region 40420
Tssr40421 4 150569538 to 150569598 60 + TSS region transcription start site region 40421
Tssr44745 4 150569865 to 150569895 30 - TSS region transcription start site region 44745
Tssr44746 4 150570066 to 150570074 8 - TSS region transcription start site region 44746
Tssr44747 4 150570076 to 150570097 21 - TSS region transcription start site region 44747
Tssr44748 4 150570114 to 150570125 11 - TSS region transcription start site region 44748
Tssr40422 4 150570200 to 150570221 21 + TSS region transcription start site region 40422
Tssr44749 4 150570265 to 150570308 43 - TSS region transcription start site region 44749
Tssr40423 4 150571885 to 150571891 6 + TSS region transcription start site region 40423
Tssr40424 4 150573509 to 150573522 13 + TSS region transcription start site region 40424
Ignpq2 4 150592276 to 150592401 125 QTL IgA nephropathy QTL 2
D4Mit33 4 150592276 to 150592401 125 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 33
Sles2 4 150592401 to 95069342 -55523059 QTL systemic lupus erythmatosus suppressor 2
Tssr40425 4 150613711 to 150613729 18 + TSS region transcription start site region 40425
Tssr40426 4 150613809 to 150613829 20 + TSS region transcription start site region 40426
Tssr40427 4 150614143 to 150614162 19 + TSS region transcription start site region 40427
Tssr40428 4 150614185 to 150614198 13 + TSS region transcription start site region 40428
Tssr40429 4 150614508 to 150614525 17 + TSS region transcription start site region 40429
Tssr40430 4 150614574 to 150614597 23 + TSS region transcription start site region 40430
Tssr40431 4 150615077 to 150615118 41 + TSS region transcription start site region 40431
Tssr40432 4 150615170 to 150615194 24 + TSS region transcription start site region 40432
Tssr40433 4 150615214 to 150615275 61 + TSS region transcription start site region 40433
Tssr40434 4 150615955 to 150615970 15 + TSS region transcription start site region 40434
Slc45a1 4 150629396 to 150652174 22778 - protein coding gene solute carrier family 45, member 1
Cpgi15353 4 150651860 to 150652283 423 CpG island CpG island 15353
Tssr44750 4 150652125 to 150652181 56 - TSS region transcription start site region 44750
Cpgi15354 4 150656015 to 150656254 239 CpG island CpG island 15354
Tssr40435 4 150661933 to 150661937 4 + TSS region transcription start site region 40435
Gm16079 4 150668248 to 150678792 10544 - lincRNA gene predicted gene 16079
D4Mit161.2 4 150670613 to 150670775 162 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 161.2
D4Mit161 4 150670789 to 150670932 143 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 161
Tssr40436 4 150678137 to 150678141 4 + TSS region transcription start site region 40436
Tssr44751 4 150678756 to 150678766 10 - TSS region transcription start site region 44751
Cpgi15355 4 150678825 to 150679173 348 CpG island CpG island 15355
Tssr44752 4 150686510 to 150686515 5 - TSS region transcription start site region 44752
Tssr44753 4 150687129 to 150687134 5 - TSS region transcription start site region 44753
Gm36600 4 150704548 to 150739130 34582 + lncRNA gene predicted gene, 36600
D4Mit190 4 150704851 to 150704994 143 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 190
Del(4D4Mit190-D4Mit51)2Aam 4 150704851 to 155046016 4341165 chromosomal deletion deletion, Chr 4, Alea A Mills 2
Dp(4D4Mit190-D4Mit51)1Aam 4 150704851 to 155046016 4341165 chromosomal duplication duplication, Chr 4, Alea A Mills 1
Tssr40437 4 150705205 to 150705216 11 + TSS region transcription start site region 40437
Tssr40438 4 150710872 to 150710876 4 + TSS region transcription start site region 40438
Tssr44754 4 150717918 to 150717961 43 - TSS region transcription start site region 44754
Cpgi15356 4 150722218 to 150722401 183 CpG island CpG island 15356
Tssr40439 4 150748347 to 150748353 6 + TSS region transcription start site region 40439
Gm36806 4 150776226 to 150818152 41926 - lncRNA gene predicted gene, 36806
Tssr44755 4 150781418 to 150781422 4 - TSS region transcription start site region 44755
Tssr1385 4 150797955 to 150797957 2 - TSS region transcription start site region 1385
Tssr1386 4 150799591 to 150799611 20 - TSS region transcription start site region 1386
Gm42356 4 150807722 to 150809721 1999 + lncRNA gene predicted gene, 42356
Tssr40440 4 150807775 to 150807784 9 + TSS region transcription start site region 40440
Tssr40441 4 150807789 to 150807805 16 + TSS region transcription start site region 40441