Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:149561252-149998332

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104 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ctnnbip1 4 149518241 to 149566437 48196 + protein coding gene catenin beta interacting protein 1
Gm13066 4 149565620 to 149567790 2170 - antisense lncRNA gene predicted gene 13066
Tssr44662 4 149571290 to 149571324 34 - TSS region transcription start site region 44662
A930041D05Rik 4 149572732 to 149573992 1260 unclassified gene RIKEN cDNA A930041D05 gene
Cpgi15329 4 149585889 to 149588025 2136 CpG island CpG island 15329
Tssr40342 4 149586420 to 149586427 7 + TSS region transcription start site region 40342
Tssr40343 4 149586432 to 149586511 79 + TSS region transcription start site region 40343
Clstn1 4 149586468 to 149648899 62431 + protein coding gene calsyntenin 1
Tssr40344 4 149586514 to 149586548 34 + TSS region transcription start site region 40344
Tssr40345 4 149586555 to 149586566 11 + TSS region transcription start site region 40345
Tssr40346 4 149587243 to 149587274 31 + TSS region transcription start site region 40346
Tssr40347 4 149587282 to 149587296 14 + TSS region transcription start site region 40347
Tssr40348 4 149614116 to 149614133 17 + TSS region transcription start site region 40348
Tssr1381 4 149622760 to 149622788 28 + TSS region transcription start site region 1381
Tssr40349 4 149627284 to 149627296 12 + TSS region transcription start site region 40349
Tssr40350 4 149629324 to 149629351 27 + TSS region transcription start site region 40350
Tssr40351 4 149634691 to 149634711 20 + TSS region transcription start site region 40351
Tssr40352 4 149635240 to 149635252 12 + TSS region transcription start site region 40352
Tssr40353 4 149637400 to 149637404 4 + TSS region transcription start site region 40353
Tssr40354 4 149647881 to 149647913 32 + TSS region transcription start site region 40354
Tssr40355 4 149647953 to 149647956 3 + TSS region transcription start site region 40355
Pik3cd 4 149649168 to 149702566 53398 - protein coding gene phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta
Mir7023 4 149655504 to 149655567 63 - miRNA gene microRNA 7023
Tssr44663 4 149657925 to 149657945 20 - TSS region transcription start site region 44663
Tssr44664 4 149663187 to 149663202 15 - TSS region transcription start site region 44664
Tssr44665 4 149664892 to 149664893 1 - TSS region transcription start site region 44665
Cpgi15330 4 149675339 to 149676405 1066 CpG island CpG island 15330
Tssr44666 4 149676043 to 149676065 22 - TSS region transcription start site region 44666
Tssr44667 4 149676066 to 149676124 58 - TSS region transcription start site region 44667
Tssr44668 4 149682983 to 149682985 2 - TSS region transcription start site region 44668
Tssr44669 4 149683143 to 149683146 3 - TSS region transcription start site region 44669
Tssr44670 4 149685697 to 149685701 4 - TSS region transcription start site region 44670
Tssr44671 4 149689516 to 149689535 19 - TSS region transcription start site region 44671
Tssr44672 4 149697847 to 149697856 9 - TSS region transcription start site region 44672
Cpgi15331 4 149698097 to 149698780 683 CpG island CpG island 15331
Tssr44673 4 149698598 to 149698617 19 - TSS region transcription start site region 44673
Tssr44674 4 149698640 to 149698654 14 - TSS region transcription start site region 44674
Tssr44675 4 149698702 to 149698711 9 - TSS region transcription start site region 44675
Tssr44676 4 149701581 to 149701602 21 - TSS region transcription start site region 44676
Tssr44677 4 149701614 to 149701621 7 - TSS region transcription start site region 44677
Tssr40356 4 149701709 to 149701750 41 + TSS region transcription start site region 40356
Tssr44678 4 149702838 to 149702858 20 - TSS region transcription start site region 44678
Tssr1382 4 149702897 to 149702931 34 + TSS region transcription start site region 1382
Tmem201 4 149715375 to 149738044 22669 - protein coding gene transmembrane protein 201
Tssr44679 4 149715774 to 149715778 4 - TSS region transcription start site region 44679
Cpgi15332 4 149722560 to 149722724 164 CpG island CpG island 15332
Cpgi15333 4 149727155 to 149727307 152 CpG island CpG island 15333
Cpgi15334 4 149737103 to 149738462 1359 CpG island CpG island 15334
Tssr44680 4 149737957 to 149738054 97 - TSS region transcription start site region 44680
Tssr44681 4 149738055 to 149738077 22 - TSS region transcription start site region 44681
Tssr44682 4 149742222 to 149742223 1 - TSS region transcription start site region 44682
Slc25a33 4 149744036 to 149774267 30231 - protein coding gene solute carrier family 25, member 33
Gm13068 4 149748518 to 149749607 1089 + antisense lncRNA gene predicted gene 13068
Tssr44683 4 149749431 to 149749440 9 - TSS region transcription start site region 44683
Tssr44684 4 149749452 to 149749465 13 - TSS region transcription start site region 44684
Cpgi15335 4 149773470 to 149774675 1205 CpG island CpG island 15335
Tssr44685 4 149774049 to 149774060 11 - TSS region transcription start site region 44685
Tssr44686 4 149774082 to 149774113 31 - TSS region transcription start site region 44686
Tssr44687 4 149774211 to 149774234 23 - TSS region transcription start site region 44687
Tssr44688 4 149774238 to 149774279 41 - TSS region transcription start site region 44688
Tssr1383 4 149774288 to 149774298 10 - TSS region transcription start site region 1383
Gm16188 4 149776252 to 149783332 7080 + lincRNA gene predicted gene 16188
Gm13073 4 149780024 to 149780714 690 - lincRNA gene predicted gene 13073
Gm42354 4 149790691 to 149802529 11838 + lncRNA gene predicted gene, 42354
Gm13065 4 149793279 to 149793419 140 - pseudogene predicted gene 13065
Gm13064 4 149814666 to 149815222 556 - pseudogene predicted gene 13064
Cpgi15336 4 149815276 to 149815720 444 CpG island CpG island 15336
n-R5s193 4 149817732 to 149817840 108 + rRNA gene nuclear encoded rRNA 5S 193
Gm47301 4 149817764 to 149817823 59 + miRNA gene predicted gene, 47301
Tssr44689 4 149850214 to 149850217 3 - TSS region transcription start site region 44689
Tssr44690 4 149854075 to 149854083 8 - TSS region transcription start site region 44690
Cpgi15337 4 149854369 to 149854830 461 CpG island CpG island 15337
Tssr44691 4 149854466 to 149854472 6 - TSS region transcription start site region 44691
Tssr40357 4 149854528 to 149854566 38 + TSS region transcription start site region 40357
Tssr40358 4 149854567 to 149854578 11 + TSS region transcription start site region 40358
Tssr40359 4 149854582 to 149854596 14 + TSS region transcription start site region 40359
Tssr40360 4 149854633 to 149854638 5 + TSS region transcription start site region 40360
Tssr44692 4 149856285 to 149856289 4 - TSS region transcription start site region 44692
Tssr44693 4 149856466 to 149856480 14 - TSS region transcription start site region 44693
Cpgi15338 4 149889297 to 149889451 154 CpG island CpG island 15338
D4Mit342 4 149892345 to 149892568 223 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 342
Spsb1 4 149896283 to 149955006 58723 - protein coding gene splA/ryanodine receptor domain and SOCS box containing 1
Gm13070 4 149902058 to 149904474 2416 + antisense lncRNA gene predicted gene 13070
Tssr44694 4 149909570 to 149909575 5 - TSS region transcription start site region 44694
Tssr44695 4 149909583 to 149909612 29 - TSS region transcription start site region 44695
Tssr44696 4 149909680 to 149909694 14 - TSS region transcription start site region 44696
Tssr44697 4 149909719 to 149909744 25 - TSS region transcription start site region 44697
D4Mit127 4 149926037 to 149926199 162 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 127
Gasa2 4 149926037 to 149926199 162 QTL gastritis type A susceptibility locus 2
D4Nds5 4 149926042 to 149926195 153 DNA segment DNA segment, Chr 4, Nuffield Department of Surgery 5
Cpgi15339 4 149954011 to 149955545 1534 CpG island CpG island 15339
Tssr44698 4 149954991 to 149955027 36 - TSS region transcription start site region 44698
Tssr44699 4 149955028 to 149955048 20 - TSS region transcription start site region 44699
Tssr44700 4 149955052 to 149955063 11 - TSS region transcription start site region 44700
Tssr44701 4 149974985 to 149974989 4 - TSS region transcription start site region 44701
Tssr44702 4 149976493 to 149976498 5 - TSS region transcription start site region 44702
Tssr44703 4 149976757 to 149976774 17 - TSS region transcription start site region 44703
H6pd 4 149979475 to 150009023 29548 - protein coding gene hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)
Tssr44704 4 149980939 to 149980956 17 - TSS region transcription start site region 44704
Cpgi15340 4 149988910 to 149989211 301 CpG island CpG island 15340
Tssr44705 4 149995805 to 149995811 6 - TSS region transcription start site region 44705
Tssr44706 4 149996360 to 149996383 23 - TSS region transcription start site region 44706
Tssr44707 4 149996397 to 149996415 18 - TSS region transcription start site region 44707
Tssr44708 4 149996430 to 149996445 15 - TSS region transcription start site region 44708