Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:148890283-149880303

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210 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Casz1 4 148804429 to 148954889 150460 + protein coding gene castor zinc finger 1
Cpgi15313 4 148890921 to 148891540 619 CpG island CpG island 15313
Tssr40307 4 148895907 to 148895924 17 + TSS region transcription start site region 40307
Tssr40308 4 148896312 to 148896350 38 + TSS region transcription start site region 40308
Cpgi15314 4 148899784 to 148901925 2141 CpG island CpG island 15314
Tssr40309 4 148901128 to 148901202 74 + TSS region transcription start site region 40309
Tssr40310 4 148901301 to 148901311 10 + TSS region transcription start site region 40310
Gm15969 4 148913511 to 148914324 813 - antisense lncRNA gene predicted gene 15969
D4Mit129 4 148923159 to 148923287 128 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 129
Cpgi15315 4 148940718 to 148940879 161 CpG island CpG island 15315
Tssr40311 4 148941067 to 148941081 14 + TSS region transcription start site region 40311
Tssr40312 4 148941143 to 148941155 12 + TSS region transcription start site region 40312
Tssr40313 4 148941176 to 148941188 12 + TSS region transcription start site region 40313
Gm13205 4 148947492 to 148948914 1422 - antisense lncRNA gene predicted gene 13205
Tssr40314 4 148951127 to 148951140 13 + TSS region transcription start site region 40314
Cpgi15316 4 148951247 to 148953110 1863 CpG island CpG island 15316
Tssr44618 4 148952879 to 148952917 38 - TSS region transcription start site region 44618
Tssr44619 4 148952995 to 148953019 24 - TSS region transcription start site region 44619
Gm17029 4 148960297 to 148984671 24374 + antisense lncRNA gene predicted gene 17029
Tssr40315 4 148960354 to 148960365 11 + TSS region transcription start site region 40315
Pex14 4 148960535 to 149099812 139277 - protein coding gene peroxisomal biogenesis factor 14
Gm42351 4 148997016 to 149003006 5990 - lncRNA gene predicted gene, 42351
Cpgi15317 4 149081517 to 149081810 293 CpG island CpG island 15317
Gm9506 4 149096383 to 149096702 319 + pseudogene predicted gene 9506
Gm46722 4 149098924 to 149099819 895 + lncRNA gene predicted gene, 46722
Cpgi15318 4 149099274 to 149099992 718 CpG island CpG island 15318
Tssr44620 4 149099802 to 149099843 41 - TSS region transcription start site region 44620
Cpgi15319 4 149104007 to 149104626 619 CpG island CpG island 15319
Tssr40316 4 149104130 to 149104189 59 + TSS region transcription start site region 40316
Dffa 4 149104146 to 149120647 16501 + protein coding gene DNA fragmentation factor, alpha subunit
Tssr40317 4 149104201 to 149104231 30 + TSS region transcription start site region 40317
Tssr40318 4 149104236 to 149104247 11 + TSS region transcription start site region 40318
D4Mit189 4 149108596 to 149108722 126 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 189
Cort 4 149125034 to 149126763 1729 - protein coding gene cortistatin
Tssr44621 4 149126665 to 149126681 16 - TSS region transcription start site region 44621
Tssr44622 4 149126688 to 149126698 10 - TSS region transcription start site region 44622
Cenps 4 149128349 to 149137600 9251 - protein coding gene centromere protein S
Cpgi15320 4 149136975 to 149137821 846 CpG island CpG island 15320
Tssr44623 4 149137536 to 149137595 59 - TSS region transcription start site region 44623
Tssr44624 4 149137599 to 149137625 26 - TSS region transcription start site region 44624
Rpsa-ps12 4 149142497 to 149143388 891 - pseudogene ribosomal protein SA, pseudogene 12
Tssr44625 4 149143459 to 149143467 8 - TSS region transcription start site region 44625
Pgd 4 149149985 to 149166707 16722 - protein coding gene phosphogluconate dehydrogenase
Tssr40319 4 149149992 to 149149996 4 + TSS region transcription start site region 40319
Tssr44626 4 149150571 to 149150605 34 - TSS region transcription start site region 44626
Tssr44627 4 149150623 to 149150643 20 - TSS region transcription start site region 44627
Tssr44628 4 149153946 to 149153984 38 - TSS region transcription start site region 44628
Tssr44629 4 149154213 to 149154231 18 - TSS region transcription start site region 44629
Tssr44630 4 149158063 to 149158084 21 - TSS region transcription start site region 44630
Tssr44631 4 149165144 to 149165163 19 - TSS region transcription start site region 44631
Tssr44632 4 149165168 to 149165179 11 - TSS region transcription start site region 44632
Tssr44633 4 149166084 to 149166098 14 - TSS region transcription start site region 44633
Cpgi15321 4 149166191 to 149167583 1392 CpG island CpG island 15321
Tssr44634 4 149166634 to 149166643 9 - TSS region transcription start site region 44634
Tssr44635 4 149166654 to 149166677 23 - TSS region transcription start site region 44635
Tssr44636 4 149166686 to 149166703 17 - TSS region transcription start site region 44636
Tssr40320 4 149166809 to 149166843 34 + TSS region transcription start site region 40320
Kif1b 4 149176319 to 149307693 131374 - protein coding gene kinesin family member 1B
Wld 4 149176319 to 149548252 371933 heritable phenotypic marker wallerian degeneration
Tssr44637 4 149177599 to 149177616 17 - TSS region transcription start site region 44637
Tssr44638 4 149178189 to 149178218 29 - TSS region transcription start site region 44638
D4Mit49 4 149198796 to 149198945 149 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 49
Tssr44639 4 149214158 to 149214196 38 - TSS region transcription start site region 44639
Cpgi15322 4 149220555 to 149220805 250 CpG island CpG island 15322
Tssr44640 4 149247261 to 149247272 11 - TSS region transcription start site region 44640
Tssr44641 4 149247316 to 149247327 11 - TSS region transcription start site region 44641
6720462K09Rik 4 149255153 to 149256711 1558 unclassified gene RIKEN cDNA 6720462K09 gene
Tssr40321 4 149261119 to 149261134 15 + TSS region transcription start site region 40321
Cpgi15323 4 149306717 to 149308442 1725 CpG island CpG island 15323
Tssr44642 4 149307685 to 149307703 18 - TSS region transcription start site region 44642
Tssr44643 4 149307714 to 149307738 24 - TSS region transcription start site region 44643
Tssr44644 4 149313969 to 149313993 24 - TSS region transcription start site region 44644
Tssr44645 4 149314006 to 149314022 16 - TSS region transcription start site region 44645
Tssr40322 4 149323968 to 149323977 9 + TSS region transcription start site region 40322
Tssr40323 4 149323983 to 149323992 9 + TSS region transcription start site region 40323
Ube4b 4 149328416 to 149426631 98215 - protein coding gene ubiquitination factor E4B
Ube4bos3 4 149334639 to 149335897 1258 + antisense lncRNA gene ubiquitination factor E4B, opposite strand 3
Tssr40324 4 149334650 to 149334679 29 + TSS region transcription start site region 40324
Ube4bos2 4 149338087 to 149338531 444 + antisense lncRNA gene ubiquitination factor E4B, opposite strand 2
D4Mit362 4 149342224 to 149342412 188 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 362
Tssr40325 4 149347879 to 149347889 10 + TSS region transcription start site region 40325
Ube4bos1 4 149347885 to 149365277 17392 + antisense lncRNA gene ubiquitination factor E4B, opposite strand 1
Tssr44646 4 149351708 to 149351721 13 - TSS region transcription start site region 44646
Tssr1380 4 149365782 to 149365790 8 - TSS region transcription start site region 1380
Tssr44647 4 149385283 to 149385303 20 - TSS region transcription start site region 44647
Tssr44648 4 149399380 to 149399398 18 - TSS region transcription start site region 44648
Tssr44649 4 149408470 to 149408480 10 - TSS region transcription start site region 44649
Cpgi15324 4 149425862 to 149427007 1145 CpG island CpG island 15324
Tssr44650 4 149426229 to 149426242 13 - TSS region transcription start site region 44650
Tssr44651 4 149426262 to 149426271 9 - TSS region transcription start site region 44651
Tssr44652 4 149426354 to 149426366 12 - TSS region transcription start site region 44652
Tssr44653 4 149426373 to 149426393 20 - TSS region transcription start site region 44653
Tssr44654 4 149426398 to 149426423 25 - TSS region transcription start site region 44654
Tssr44655 4 149426603 to 149426638 35 - TSS region transcription start site region 44655
Cpgi15325 4 149445107 to 149445672 565 CpG island CpG island 15325
Tssr44656 4 149445587 to 149445601 14 - TSS region transcription start site region 44656
Tssr44657 4 149446046 to 149446048 2 - TSS region transcription start site region 44657
Tssr40326 4 149446137 to 149446175 38 + TSS region transcription start site region 40326
Tssr44658 4 149446265 to 149446279 14 - TSS region transcription start site region 44658
Tssr40327 4 149446676 to 149446723 47 + TSS region transcription start site region 40327
Rbp7 4 149449687 to 149454978 5291 - protein coding gene retinol binding protein 7, cellular
Tssr44659 4 149454971 to 149454986 15 - TSS region transcription start site region 44659
Trmt112-ps2 4 149457329 to 149457706 377 + pseudogene tRNA methyltransferase 11-2, pseudogene 2
Nmnat1 4 149468597 to 149485180 16583 - protein coding gene nicotinamide nucleotide adenylyltransferase 1
Tmem274 4 149478423 to 149484265 5842 + protein coding gene transmembrame protein 274
Cpgi15326 4 149480217 to 149480546 329 CpG island CpG island 15326
Cpgi15327 4 149484909 to 149485760 851 CpG island CpG island 15327
Tssr44660 4 149485157 to 149485199 42 - TSS region transcription start site region 44660
Tssr44661 4 149485202 to 149485223 21 - TSS region transcription start site region 44661
Tssr40328 4 149485215 to 149485254 39 + TSS region transcription start site region 40328
Lzic 4 149485229 to 149496668 11439 + protein coding gene leucine zipper and CTNNBIP1 domain containing
Tssr40329 4 149485260 to 149485307 47 + TSS region transcription start site region 40329
Tssr40330 4 149485316 to 149485327 11 + TSS region transcription start site region 40330
Tssr40331 4 149496970 to 149496985 15 + TSS region transcription start site region 40331
Tssr40332 4 149497374 to 149497377 3 + TSS region transcription start site region 40332
Gm13071 4 149500633 to 149501008 375 + pseudogene predicted gene 13071
Tssr40333 4 149504637 to 149504677 40 + TSS region transcription start site region 40333
2900080M03Rik 4 149504662 to 149505240 578 unclassified gene RIKEN cDNA 2900080M03 gene
Gm24381 4 149517179 to 149517282 103 - snRNA gene predicted gene, 24381
Cpgi15328 4 149517882 to 149518970 1088 CpG island CpG island 15328
Tssr40334 4 149518127 to 149518157 30 + TSS region transcription start site region 40334
Tssr40335 4 149518195 to 149518209 14 + TSS region transcription start site region 40335
Tssr40336 4 149518216 to 149518277 61 + TSS region transcription start site region 40336
Ctnnbip1 4 149518241 to 149566437 48196 + protein coding gene catenin beta interacting protein 1
Tssr40337 4 149518288 to 149518308 20 + TSS region transcription start site region 40337
Mir5616 4 149537863 to 149537922 59 + miRNA gene microRNA 5616
Tssr40338 4 149539642 to 149539659 17 + TSS region transcription start site region 40338
Tssr40339 4 149539864 to 149539878 14 + TSS region transcription start site region 40339
Tssr40340 4 149545102 to 149545136 34 + TSS region transcription start site region 40340
D4Mit225.1 4 149547972 to 149548111 139 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 225.1
D4Mit225 4 149548103 to 149548252 149 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 225
Tssr40341 4 149553189 to 149553193 4 + TSS region transcription start site region 40341
Gm13066 4 149565620 to 149567790 2170 - antisense lncRNA gene predicted gene 13066
Tssr44662 4 149571290 to 149571324 34 - TSS region transcription start site region 44662
A930041D05Rik 4 149572732 to 149573992 1260 unclassified gene RIKEN cDNA A930041D05 gene
Cpgi15329 4 149585889 to 149588025 2136 CpG island CpG island 15329
Tssr40342 4 149586420 to 149586427 7 + TSS region transcription start site region 40342
Tssr40343 4 149586432 to 149586511 79 + TSS region transcription start site region 40343
Clstn1 4 149586468 to 149648899 62431 + protein coding gene calsyntenin 1
Tssr40344 4 149586514 to 149586548 34 + TSS region transcription start site region 40344
Tssr40345 4 149586555 to 149586566 11 + TSS region transcription start site region 40345
Tssr40346 4 149587243 to 149587274 31 + TSS region transcription start site region 40346
Tssr40347 4 149587282 to 149587296 14 + TSS region transcription start site region 40347
Tssr40348 4 149614116 to 149614133 17 + TSS region transcription start site region 40348
Tssr1381 4 149622760 to 149622788 28 + TSS region transcription start site region 1381
Tssr40349 4 149627284 to 149627296 12 + TSS region transcription start site region 40349
Tssr40350 4 149629324 to 149629351 27 + TSS region transcription start site region 40350
Tssr40351 4 149634691 to 149634711 20 + TSS region transcription start site region 40351
Tssr40352 4 149635240 to 149635252 12 + TSS region transcription start site region 40352
Tssr40353 4 149637400 to 149637404 4 + TSS region transcription start site region 40353
Tssr40354 4 149647881 to 149647913 32 + TSS region transcription start site region 40354
Tssr40355 4 149647953 to 149647956 3 + TSS region transcription start site region 40355
Pik3cd 4 149649168 to 149702566 53398 - protein coding gene phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta
Mir7023 4 149655504 to 149655567 63 - miRNA gene microRNA 7023
Tssr44663 4 149657925 to 149657945 20 - TSS region transcription start site region 44663
Tssr44664 4 149663187 to 149663202 15 - TSS region transcription start site region 44664
Tssr44665 4 149664892 to 149664893 1 - TSS region transcription start site region 44665
Cpgi15330 4 149675339 to 149676405 1066 CpG island CpG island 15330
Tssr44666 4 149676043 to 149676065 22 - TSS region transcription start site region 44666
Tssr44667 4 149676066 to 149676124 58 - TSS region transcription start site region 44667
Tssr44668 4 149682983 to 149682985 2 - TSS region transcription start site region 44668
Tssr44669 4 149683143 to 149683146 3 - TSS region transcription start site region 44669
Tssr44670 4 149685697 to 149685701 4 - TSS region transcription start site region 44670
Tssr44671 4 149689516 to 149689535 19 - TSS region transcription start site region 44671
Tssr44672 4 149697847 to 149697856 9 - TSS region transcription start site region 44672
Cpgi15331 4 149698097 to 149698780 683 CpG island CpG island 15331
Tssr44673 4 149698598 to 149698617 19 - TSS region transcription start site region 44673
Tssr44674 4 149698640 to 149698654 14 - TSS region transcription start site region 44674
Tssr44675 4 149698702 to 149698711 9 - TSS region transcription start site region 44675
Tssr44676 4 149701581 to 149701602 21 - TSS region transcription start site region 44676
Tssr44677 4 149701614 to 149701621 7 - TSS region transcription start site region 44677
Tssr40356 4 149701709 to 149701750 41 + TSS region transcription start site region 40356
Tssr44678 4 149702838 to 149702858 20 - TSS region transcription start site region 44678
Tssr1382 4 149702897 to 149702931 34 + TSS region transcription start site region 1382
Tmem201 4 149715375 to 149738044 22669 - protein coding gene transmembrane protein 201
Tssr44679 4 149715774 to 149715778 4 - TSS region transcription start site region 44679
Cpgi15332 4 149722560 to 149722724 164 CpG island CpG island 15332
Cpgi15333 4 149727155 to 149727307 152 CpG island CpG island 15333
Cpgi15334 4 149737103 to 149738462 1359 CpG island CpG island 15334
Tssr44680 4 149737957 to 149738054 97 - TSS region transcription start site region 44680
Tssr44681 4 149738055 to 149738077 22 - TSS region transcription start site region 44681
Tssr44682 4 149742222 to 149742223 1 - TSS region transcription start site region 44682
Slc25a33 4 149744036 to 149774267 30231 - protein coding gene solute carrier family 25, member 33
Gm13068 4 149748518 to 149749607 1089 + antisense lncRNA gene predicted gene 13068
Tssr44683 4 149749431 to 149749440 9 - TSS region transcription start site region 44683
Tssr44684 4 149749452 to 149749465 13 - TSS region transcription start site region 44684
Cpgi15335 4 149773470 to 149774675 1205 CpG island CpG island 15335
Tssr44685 4 149774049 to 149774060 11 - TSS region transcription start site region 44685
Tssr44686 4 149774082 to 149774113 31 - TSS region transcription start site region 44686
Tssr44687 4 149774211 to 149774234 23 - TSS region transcription start site region 44687
Tssr44688 4 149774238 to 149774279 41 - TSS region transcription start site region 44688
Tssr1383 4 149774288 to 149774298 10 - TSS region transcription start site region 1383
Gm16188 4 149776252 to 149783332 7080 + lincRNA gene predicted gene 16188
Gm13073 4 149780024 to 149780714 690 - lincRNA gene predicted gene 13073
Gm42354 4 149790691 to 149802529 11838 + lncRNA gene predicted gene, 42354
Gm13065 4 149793279 to 149793419 140 - pseudogene predicted gene 13065
Gm13064 4 149814666 to 149815222 556 - pseudogene predicted gene 13064
Cpgi15336 4 149815276 to 149815720 444 CpG island CpG island 15336
n-R5s193 4 149817732 to 149817840 108 + rRNA gene nuclear encoded rRNA 5S 193
Gm47301 4 149817764 to 149817823 59 + miRNA gene predicted gene, 47301