Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:14883313-17033325

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91 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pip4p2 4 14864219 to 14915260 51041 + protein coding gene phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2
Tssr36543 4 14899409 to 14899411 2 + TSS region transcription start site region 36543
Tssr36544 4 14914450 to 14914457 7 + TSS region transcription start site region 36544
Cpgi14053 4 14929837 to 14931045 1208 CpG island CpG island 14053
Tssr36545 4 14929860 to 14929871 11 + TSS region transcription start site region 36545
Gm11837 4 14929908 to 14953030 23122 + antisense lncRNA gene predicted gene 11837
Tssr36546 4 14930619 to 14930701 82 + TSS region transcription start site region 36546
Tssr36547 4 14930709 to 14930720 11 + TSS region transcription start site region 36547
Necab1 4 14952245 to 15149794 197549 - protein coding gene N-terminal EF-hand calcium binding protein 1
Tssr36548 4 15022530 to 15022556 26 + TSS region transcription start site region 36548
Gm11844 4 15022582 to 15031987 9405 + antisense lncRNA gene predicted gene 11844
Gm36801 4 15090169 to 15126648 36479 + lncRNA gene predicted gene, 36801
Cpgi14054 4 15148776 to 15149269 493 CpG island CpG island 14054
Tssr40968 4 15148941 to 15148952 11 - TSS region transcription start site region 40968
Tssr40969 4 15148961 to 15148972 11 - TSS region transcription start site region 40969
Tssr40970 4 15148977 to 15149009 32 - TSS region transcription start site region 40970
Tssr40971 4 15149011 to 15149045 34 - TSS region transcription start site region 40971
Tssr40972 4 15149051 to 15149070 19 - TSS region transcription start site region 40972
Tssr40973 4 15149755 to 15149773 18 - TSS region transcription start site region 40973
Gm11845 4 15154392 to 15154718 326 + pseudogene predicted gene 11845
Tssr1123 4 15185398 to 15185399 1 + TSS region transcription start site region 1123
Cpgi14055 4 15265373 to 15266822 1449 CpG island CpG island 14055
Tssr36549 4 15265767 to 15265782 15 + TSS region transcription start site region 36549
Tssr36550 4 15265798 to 15265809 11 + TSS region transcription start site region 36550
Tmem64 4 15265831 to 15286753 20922 + protein coding gene transmembrane protein 64
Tssr36551 4 15266102 to 15266173 71 + TSS region transcription start site region 36551
Tssr36552 4 15266187 to 15266198 11 + TSS region transcription start site region 36552
Tssr36553 4 15269608 to 15269633 25 + TSS region transcription start site region 36553
Tssr36554 4 15284374 to 15284419 45 + TSS region transcription start site region 36554
Gm29883 4 15289097 to 15327768 38671 + lncRNA gene predicted gene, 29883
Tssr40974 4 15300080 to 15300092 12 - TSS region transcription start site region 40974
Gm29829 4 15309147 to 15317491 8344 - lncRNA gene predicted gene, 29829
Gm24317 4 15383148 to 15383254 106 + snRNA gene predicted gene, 24317
Gm11856 4 15486366 to 15486790 424 + pseudogene predicted gene 11856
Gm11859 4 15531657 to 15532111 454 - pseudogene predicted gene 11859
Gm11857 4 15636169 to 15636485 316 + pseudogene predicted gene 11857
Gm11858 4 15740930 to 15741767 837 - pseudogene predicted gene 11858
Gm11855 4 15819074 to 15821370 2296 - pseudogene predicted gene 11855
Gm24567 4 15819909 to 15820029 120 + miRNA gene predicted gene, 24567
Cpgi14056 4 15881135 to 15881822 687 CpG island CpG island 14056
Tssr36555 4 15881255 to 15881272 17 + TSS region transcription start site region 36555
Calb1 4 15881264 to 15906709 25445 + protein coding gene calbindin 1
Gm26148 4 15911567 to 15911634 67 - snoRNA gene predicted gene, 26148
Decr1 4 15917240 to 15945507 28267 - protein coding gene 2,4-dienoyl CoA reductase 1, mitochondrial
Mir6400 4 15942900 to 15942991 91 - miRNA gene microRNA 6400
Cpgi14057 4 15945067 to 15945671 604 CpG island CpG island 14057
Tssr40975 4 15945359 to 15945388 29 - TSS region transcription start site region 40975
G830015F12Rik 4 15956979 to 15958207 1228 unclassified gene RIKEN cDNA G830015F12 gene
Cpgi14058 4 15957784 to 15958493 709 CpG island CpG island 14058
Tssr36556 4 15957923 to 15958016 93 + TSS region transcription start site region 36556
Nbn 4 15957925 to 15992589 34664 + protein coding gene nibrin
Tssr40976 4 15958164 to 15958208 44 - TSS region transcription start site region 40976
Tssr40977 4 15958313 to 15958325 12 - TSS region transcription start site region 40977
Tssr40978 4 15958346 to 15958357 11 - TSS region transcription start site region 40978
Tssr40979 4 15958415 to 15958447 32 - TSS region transcription start site region 40979
Tssr36557 4 15958559 to 15958607 48 + TSS region transcription start site region 36557
Gm11869 4 15969572 to 15969928 356 - pseudogene predicted gene 11869
Tssr36558 4 15976402 to 15976422 20 + TSS region transcription start site region 36558
Tssr36559 4 15988985 to 15989009 24 + TSS region transcription start site region 36559
Tssr36560 4 15989016 to 15989042 26 + TSS region transcription start site region 36560
Tssr36561 4 15989043 to 15989059 16 + TSS region transcription start site region 36561
Osgin2 4 15997121 to 16013888 16767 - protein coding gene oxidative stress induced growth inhibitor family member 2
Tssr40980 4 16001472 to 16001475 3 - TSS region transcription start site region 40980
Gm11870 4 16011005 to 16012326 1321 - pseudogene predicted gene 11870
Cpgi14059 4 16013394 to 16014402 1008 CpG island CpG island 14059
Tssr40981 4 16013766 to 16013775 9 - TSS region transcription start site region 40981
Tssr40982 4 16013783 to 16013802 19 - TSS region transcription start site region 40982
Tssr40983 4 16013804 to 16013808 4 - TSS region transcription start site region 40983
Tssr40984 4 16013811 to 16013830 19 - TSS region transcription start site region 40984
Tssr40985 4 16013835 to 16013856 21 - TSS region transcription start site region 40985
Tssr40986 4 16013868 to 16013884 16 - TSS region transcription start site region 40986
Tssr40987 4 16013887 to 16013890 3 - TSS region transcription start site region 40987
Gm11874 4 16120759 to 16120888 129 - pseudogene predicted gene 11874
Ripk2 4 16122733 to 16163647 40914 - protein coding gene receptor (TNFRSF)-interacting serine-threonine kinase 2
Gm22690 4 16129566 to 16129675 109 - miRNA gene predicted gene, 22690
Tssr40988 4 16145741 to 16145753 12 - TSS region transcription start site region 40988
Tssr40989 4 16147152 to 16147167 15 - TSS region transcription start site region 40989
Cpgi14060 4 16162894 to 16164116 1222 CpG island CpG island 14060
Tssr40990 4 16163492 to 16163505 13 - TSS region transcription start site region 40990
Tssr40991 4 16163512 to 16163533 21 - TSS region transcription start site region 40991
Tssr40992 4 16163611 to 16163625 14 - TSS region transcription start site region 40992
Tssr36562 4 16164086 to 16164118 32 + TSS region transcription start site region 36562
A530072M11Rik 4 16164110 to 16266225 102115 + lncRNA gene RIKEN cDNA gene A530072M11
Gm11865 4 16246269 to 16249514 3245 + pseudogene predicted gene 11865
Gm37355 4 16384052 to 16384657 605 + unclassified gene predicted gene, 37355
Gm11864 4 16390462 to 16391664 1202 - pseudogene predicted gene 11864
Gm11861 4 16464876 to 16509323 44447 + lincRNA gene predicted gene 11861
Gm24978 4 16675923 to 16676029 106 + snRNA gene predicted gene, 24978
Gm11862 4 16714944 to 16715602 658 + pseudogene predicted gene 11862
Gm23975 4 16861689 to 16861794 105 - snRNA gene predicted gene, 23975
Gm11848 4 17032691 to 17033656 965 - pseudogene predicted gene 11848