Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:148619395-149159444

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80 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lfibq20 4 144973265 to 148822969 3849704 QTL liver fibrosis QTL 20
Tardbp 4 148612382 to 148626996 14614 - protein coding gene TAR DNA binding protein
Cpgi15308 4 148625747 to 148627212 1465 CpG island CpG island 15308
Tssr44612 4 148626731 to 148626746 15 - TSS region transcription start site region 44612
Tssr44613 4 148626756 to 148626775 19 - TSS region transcription start site region 44613
Tssr44614 4 148627009 to 148627033 24 - TSS region transcription start site region 44614
Gm572 4 148643317 to 148671572 28255 + protein coding gene predicted gene 572
Tssr40296 4 148664321 to 148664341 20 + TSS region transcription start site region 40296
Tssr40297 4 148664349 to 148664356 7 + TSS region transcription start site region 40297
Tssr40298 4 148667176 to 148667199 23 + TSS region transcription start site region 40298
Tssr40299 4 148667205 to 148667221 16 + TSS region transcription start site region 40299
Tssr40300 4 148667230 to 148667256 26 + TSS region transcription start site region 40300
D4Mit310 4 148696657 to 148696773 116 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 310
Gm13203 4 148713703 to 148716581 2878 + lincRNA gene predicted gene 13203
Tssr44615 4 148723352 to 148723363 11 - TSS region transcription start site region 44615
Cpgi15309 4 148723889 to 148724904 1015 CpG island CpG island 15309
Cpgi15310 4 148742474 to 148743579 1105 CpG island CpG island 15310
Tssr44616 4 148744228 to 148744242 14 - TSS region transcription start site region 44616
Gm32897 4 148744903 to 148747395 2492 - lncRNA gene predicted gene, 32897
Tssr44617 4 148751819 to 148751836 17 - TSS region transcription start site region 44617
Gm42350 4 148779750 to 148784880 5130 - lncRNA gene predicted gene, 42350
Cpgi15311 4 148803843 to 148807300 3457 CpG island CpG island 15311
Tssr1379 4 148804330 to 148804341 11 + TSS region transcription start site region 1379
Tssr40301 4 148804350 to 148804373 23 + TSS region transcription start site region 40301
Tssr40302 4 148804420 to 148804439 19 + TSS region transcription start site region 40302
Casz1 4 148804429 to 148954889 150460 + protein coding gene castor zinc finger 1
Tssr40303 4 148804450 to 148804494 44 + TSS region transcription start site region 40303
Tssr40304 4 148853536 to 148853538 2 + TSS region transcription start site region 40304
Gm42352 4 148865117 to 148867483 2366 - lncRNA gene predicted gene, 42352
Cpgi15312 4 148874012 to 148874408 396 CpG island CpG island 15312
Tssr40305 4 148889345 to 148889363 18 + TSS region transcription start site region 40305
Tssr40306 4 148889395 to 148889444 49 + TSS region transcription start site region 40306
Cpgi15313 4 148890921 to 148891540 619 CpG island CpG island 15313
Tssr40307 4 148895907 to 148895924 17 + TSS region transcription start site region 40307
Tssr40308 4 148896312 to 148896350 38 + TSS region transcription start site region 40308
Cpgi15314 4 148899784 to 148901925 2141 CpG island CpG island 15314
Tssr40309 4 148901128 to 148901202 74 + TSS region transcription start site region 40309
Tssr40310 4 148901301 to 148901311 10 + TSS region transcription start site region 40310
Gm15969 4 148913511 to 148914324 813 - antisense lncRNA gene predicted gene 15969
D4Mit129 4 148923159 to 148923287 128 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 129
Cpgi15315 4 148940718 to 148940879 161 CpG island CpG island 15315
Tssr40311 4 148941067 to 148941081 14 + TSS region transcription start site region 40311
Tssr40312 4 148941143 to 148941155 12 + TSS region transcription start site region 40312
Tssr40313 4 148941176 to 148941188 12 + TSS region transcription start site region 40313
Gm13205 4 148947492 to 148948914 1422 - antisense lncRNA gene predicted gene 13205
Tssr40314 4 148951127 to 148951140 13 + TSS region transcription start site region 40314
Cpgi15316 4 148951247 to 148953110 1863 CpG island CpG island 15316
Tssr44618 4 148952879 to 148952917 38 - TSS region transcription start site region 44618
Tssr44619 4 148952995 to 148953019 24 - TSS region transcription start site region 44619
Gm17029 4 148960297 to 148984671 24374 + antisense lncRNA gene predicted gene 17029
Tssr40315 4 148960354 to 148960365 11 + TSS region transcription start site region 40315
Pex14 4 148960535 to 149099812 139277 - protein coding gene peroxisomal biogenesis factor 14
Gm42351 4 148997016 to 149003006 5990 - lncRNA gene predicted gene, 42351
Cpgi15317 4 149081517 to 149081810 293 CpG island CpG island 15317
Gm9506 4 149096383 to 149096702 319 + pseudogene predicted gene 9506
Gm46722 4 149098924 to 149099819 895 + lncRNA gene predicted gene, 46722
Cpgi15318 4 149099274 to 149099992 718 CpG island CpG island 15318
Tssr44620 4 149099802 to 149099843 41 - TSS region transcription start site region 44620
Cpgi15319 4 149104007 to 149104626 619 CpG island CpG island 15319
Tssr40316 4 149104130 to 149104189 59 + TSS region transcription start site region 40316
Dffa 4 149104146 to 149120647 16501 + protein coding gene DNA fragmentation factor, alpha subunit
Tssr40317 4 149104201 to 149104231 30 + TSS region transcription start site region 40317
Tssr40318 4 149104236 to 149104247 11 + TSS region transcription start site region 40318
D4Mit189 4 149108596 to 149108722 126 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 189
Cort 4 149125034 to 149126763 1729 - protein coding gene cortistatin
Tssr44621 4 149126665 to 149126681 16 - TSS region transcription start site region 44621
Tssr44622 4 149126688 to 149126698 10 - TSS region transcription start site region 44622
Cenps 4 149128349 to 149137600 9251 - protein coding gene centromere protein S
Cpgi15320 4 149136975 to 149137821 846 CpG island CpG island 15320
Tssr44623 4 149137536 to 149137595 59 - TSS region transcription start site region 44623
Tssr44624 4 149137599 to 149137625 26 - TSS region transcription start site region 44624
Rpsa-ps12 4 149142497 to 149143388 891 - pseudogene ribosomal protein SA, pseudogene 12
Tssr44625 4 149143459 to 149143467 8 - TSS region transcription start site region 44625
Pgd 4 149149985 to 149166707 16722 - protein coding gene phosphogluconate dehydrogenase
Tssr40319 4 149149992 to 149149996 4 + TSS region transcription start site region 40319
Tssr44626 4 149150571 to 149150605 34 - TSS region transcription start site region 44626
Tssr44627 4 149150623 to 149150643 20 - TSS region transcription start site region 44627
Tssr44628 4 149153946 to 149153984 38 - TSS region transcription start site region 44628
Tssr44629 4 149154213 to 149154231 18 - TSS region transcription start site region 44629
Tssr44630 4 149158063 to 149158084 21 - TSS region transcription start site region 44630