Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:148334228-149154242

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130 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lfibq20 4 144973265 to 148822969 3849704 QTL liver fibrosis QTL 20
Gm13200 4 148356379 to 148359460 3081 - lincRNA gene predicted gene 13200
Tssr44604 4 148358862 to 148358871 9 - TSS region transcription start site region 44604
Tssr40271 4 148375010 to 148375012 2 + TSS region transcription start site region 40271
Cpgi15302 4 148392014 to 148392170 156 CpG island CpG island 15302
Tssr40272 4 148418440 to 148418446 6 + TSS region transcription start site region 40272
Ubiad1 4 148434497 to 148444751 10254 - protein coding gene UbiA prenyltransferase domain containing 1
Gm23303 4 148443334 to 148443485 151 - snRNA gene predicted gene, 23303
Cpgi15303 4 148444178 to 148445006 828 CpG island CpG island 15303
Tssr44605 4 148444455 to 148444499 44 - TSS region transcription start site region 44605
Tssr44606 4 148444733 to 148444739 6 - TSS region transcription start site region 44606
Tssr44607 4 148444744 to 148444783 39 - TSS region transcription start site region 44607
Cpgi15304 4 148448121 to 148449252 1131 CpG island CpG island 15304
Tssr40273 4 148448552 to 148448563 11 + TSS region transcription start site region 40273
Tssr40274 4 148448564 to 148448598 34 + TSS region transcription start site region 40274
Tssr40275 4 148448605 to 148448637 32 + TSS region transcription start site region 40275
Mtor 4 148448611 to 148557683 109072 + protein coding gene mechanistic target of rapamycin kinase
Tssr44608 4 148458872 to 148458883 11 - TSS region transcription start site region 44608
Tssr40276 4 148473114 to 148473119 5 + TSS region transcription start site region 40276
Angptl7 4 148495183 to 148500460 5277 - protein coding gene angiopoietin-like 7
Tssr40277 4 148496490 to 148496494 4 + TSS region transcription start site region 40277
Tssr44609 4 148500306 to 148500338 32 - TSS region transcription start site region 44609
Tssr44610 4 148500449 to 148500466 17 - TSS region transcription start site region 44610
Tssr40278 4 148511474 to 148511500 26 + TSS region transcription start site region 40278
Tssr40279 4 148536330 to 148536371 41 + TSS region transcription start site region 40279
Gm24002 4 148539127 to 148539230 103 + snRNA gene predicted gene, 24002
Gm23318 4 148555697 to 148555804 107 + snRNA gene predicted gene, 23318
Cpgi15305 4 148558175 to 148558943 768 CpG island CpG island 15305
Tssr40280 4 148558422 to 148558469 47 + TSS region transcription start site region 40280
Exosc10 4 148558429 to 148582401 23972 + protein coding gene exosome component 10
Tssr40281 4 148558489 to 148558500 11 + TSS region transcription start site region 40281
Tssr40282 4 148558735 to 148558746 11 + TSS region transcription start site region 40282
Gm13204 4 148569056 to 148569876 820 - pseudogene predicted gene 13204
Gm13209 4 148584721 to 148586007 1286 - antisense lncRNA gene predicted gene 13209
Tssr40283 4 148589919 to 148589939 20 + TSS region transcription start site region 40283
Cpgi15306 4 148591129 to 148592446 1317 CpG island CpG island 15306
Tssr40284 4 148591482 to 148591546 64 + TSS region transcription start site region 40284
Srm 4 148591513 to 148594619 3106 + protein coding gene spermidine synthase
Tssr40285 4 148591555 to 148591587 32 + TSS region transcription start site region 40285
Tssr40286 4 148591923 to 148591975 52 + TSS region transcription start site region 40286
Tssr40287 4 148591981 to 148591992 11 + TSS region transcription start site region 40287
Tssr40288 4 148592092 to 148592105 13 + TSS region transcription start site region 40288
Tssr40289 4 148593885 to 148593911 26 + TSS region transcription start site region 40289
Tssr40290 4 148593914 to 148593934 20 + TSS region transcription start site region 40290
Cpgi15307 4 148594080 to 148594283 203 CpG island CpG island 15307
Tssr40291 4 148594523 to 148594528 5 + TSS region transcription start site region 40291
Tssr44611 4 148599107 to 148599116 9 - TSS region transcription start site region 44611
Tssr40292 4 148601980 to 148601997 17 + TSS region transcription start site region 40292
Tssr40293 4 148602527 to 148602583 56 + TSS region transcription start site region 40293
Masp2 4 148602554 to 148615499 12945 + protein coding gene mannan-binding lectin serine peptidase 2
Tssr40294 4 148602658 to 148602660 2 + TSS region transcription start site region 40294
Tssr40295 4 148603755 to 148603762 7 + TSS region transcription start site region 40295
Tardbp 4 148612382 to 148626996 14614 - protein coding gene TAR DNA binding protein
Cpgi15308 4 148625747 to 148627212 1465 CpG island CpG island 15308
Tssr44612 4 148626731 to 148626746 15 - TSS region transcription start site region 44612
Tssr44613 4 148626756 to 148626775 19 - TSS region transcription start site region 44613
Tssr44614 4 148627009 to 148627033 24 - TSS region transcription start site region 44614
Gm572 4 148643317 to 148671572 28255 + protein coding gene predicted gene 572
Tssr40296 4 148664321 to 148664341 20 + TSS region transcription start site region 40296
Tssr40297 4 148664349 to 148664356 7 + TSS region transcription start site region 40297
Tssr40298 4 148667176 to 148667199 23 + TSS region transcription start site region 40298
Tssr40299 4 148667205 to 148667221 16 + TSS region transcription start site region 40299
Tssr40300 4 148667230 to 148667256 26 + TSS region transcription start site region 40300
D4Mit310 4 148696657 to 148696773 116 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 310
Gm13203 4 148713703 to 148716581 2878 + lincRNA gene predicted gene 13203
Tssr44615 4 148723352 to 148723363 11 - TSS region transcription start site region 44615
Cpgi15309 4 148723889 to 148724904 1015 CpG island CpG island 15309
Cpgi15310 4 148742474 to 148743579 1105 CpG island CpG island 15310
Tssr44616 4 148744228 to 148744242 14 - TSS region transcription start site region 44616
Gm32897 4 148744903 to 148747395 2492 - lncRNA gene predicted gene, 32897
Tssr44617 4 148751819 to 148751836 17 - TSS region transcription start site region 44617
Gm42350 4 148779750 to 148784880 5130 - lncRNA gene predicted gene, 42350
Cpgi15311 4 148803843 to 148807300 3457 CpG island CpG island 15311
Tssr1379 4 148804330 to 148804341 11 + TSS region transcription start site region 1379
Tssr40301 4 148804350 to 148804373 23 + TSS region transcription start site region 40301
Tssr40302 4 148804420 to 148804439 19 + TSS region transcription start site region 40302
Casz1 4 148804429 to 148954889 150460 + protein coding gene castor zinc finger 1
Tssr40303 4 148804450 to 148804494 44 + TSS region transcription start site region 40303
Tssr40304 4 148853536 to 148853538 2 + TSS region transcription start site region 40304
Gm42352 4 148865117 to 148867483 2366 - lncRNA gene predicted gene, 42352
Cpgi15312 4 148874012 to 148874408 396 CpG island CpG island 15312
Tssr40305 4 148889345 to 148889363 18 + TSS region transcription start site region 40305
Tssr40306 4 148889395 to 148889444 49 + TSS region transcription start site region 40306
Cpgi15313 4 148890921 to 148891540 619 CpG island CpG island 15313
Tssr40307 4 148895907 to 148895924 17 + TSS region transcription start site region 40307
Tssr40308 4 148896312 to 148896350 38 + TSS region transcription start site region 40308
Cpgi15314 4 148899784 to 148901925 2141 CpG island CpG island 15314
Tssr40309 4 148901128 to 148901202 74 + TSS region transcription start site region 40309
Tssr40310 4 148901301 to 148901311 10 + TSS region transcription start site region 40310
Gm15969 4 148913511 to 148914324 813 - antisense lncRNA gene predicted gene 15969
D4Mit129 4 148923159 to 148923287 128 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 129
Cpgi15315 4 148940718 to 148940879 161 CpG island CpG island 15315
Tssr40311 4 148941067 to 148941081 14 + TSS region transcription start site region 40311
Tssr40312 4 148941143 to 148941155 12 + TSS region transcription start site region 40312
Tssr40313 4 148941176 to 148941188 12 + TSS region transcription start site region 40313
Gm13205 4 148947492 to 148948914 1422 - antisense lncRNA gene predicted gene 13205
Tssr40314 4 148951127 to 148951140 13 + TSS region transcription start site region 40314
Cpgi15316 4 148951247 to 148953110 1863 CpG island CpG island 15316
Tssr44618 4 148952879 to 148952917 38 - TSS region transcription start site region 44618
Tssr44619 4 148952995 to 148953019 24 - TSS region transcription start site region 44619
Gm17029 4 148960297 to 148984671 24374 + antisense lncRNA gene predicted gene 17029
Tssr40315 4 148960354 to 148960365 11 + TSS region transcription start site region 40315
Pex14 4 148960535 to 149099812 139277 - protein coding gene peroxisomal biogenesis factor 14
Gm42351 4 148997016 to 149003006 5990 - lncRNA gene predicted gene, 42351
Cpgi15317 4 149081517 to 149081810 293 CpG island CpG island 15317
Gm9506 4 149096383 to 149096702 319 + pseudogene predicted gene 9506
Gm46722 4 149098924 to 149099819 895 + lncRNA gene predicted gene, 46722
Cpgi15318 4 149099274 to 149099992 718 CpG island CpG island 15318
Tssr44620 4 149099802 to 149099843 41 - TSS region transcription start site region 44620
Cpgi15319 4 149104007 to 149104626 619 CpG island CpG island 15319
Tssr40316 4 149104130 to 149104189 59 + TSS region transcription start site region 40316
Dffa 4 149104146 to 149120647 16501 + protein coding gene DNA fragmentation factor, alpha subunit
Tssr40317 4 149104201 to 149104231 30 + TSS region transcription start site region 40317
Tssr40318 4 149104236 to 149104247 11 + TSS region transcription start site region 40318
D4Mit189 4 149108596 to 149108722 126 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 189
Cort 4 149125034 to 149126763 1729 - protein coding gene cortistatin
Tssr44621 4 149126665 to 149126681 16 - TSS region transcription start site region 44621
Tssr44622 4 149126688 to 149126698 10 - TSS region transcription start site region 44622
Cenps 4 149128349 to 149137600 9251 - protein coding gene centromere protein S
Cpgi15320 4 149136975 to 149137821 846 CpG island CpG island 15320
Tssr44623 4 149137536 to 149137595 59 - TSS region transcription start site region 44623
Tssr44624 4 149137599 to 149137625 26 - TSS region transcription start site region 44624
Rpsa-ps12 4 149142497 to 149143388 891 - pseudogene ribosomal protein SA, pseudogene 12
Tssr44625 4 149143459 to 149143467 8 - TSS region transcription start site region 44625
Pgd 4 149149985 to 149166707 16722 - protein coding gene phosphogluconate dehydrogenase
Tssr40319 4 149149992 to 149149996 4 + TSS region transcription start site region 40319
Tssr44626 4 149150571 to 149150605 34 - TSS region transcription start site region 44626
Tssr44627 4 149150623 to 149150643 20 - TSS region transcription start site region 44627
Tssr44628 4 149153946 to 149153984 38 - TSS region transcription start site region 44628
Tssr44629 4 149154213 to 149154231 18 - TSS region transcription start site region 44629