Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:147343761-148463776

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194 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
C230088H06Rik 4 147018235 to 147492201 473966 - lincRNA gene RIKEN cDNA C230088H06 gene
Gm26624 4 147136278 to 147457019 320741 + lincRNA gene predicted gene, 26624
Tssr40229 4 147361280 to 147361302 22 + TSS region transcription start site region 40229
Zfp978 4 147361303 to 147391004 29701 + protein coding gene zinc finger protein 978
Gm8178 4 147378929 to 147379574 645 + pseudogene predicted gene 8178
4930546J17Rik 4 147397167 to 147399678 2511 unclassified gene RIKEN cDNA 4930546J17 gene
Gm46897 4 147399771 to 147407631 7860 + lncRNA gene predicted gene, 46897
Cpgi15279 4 147406795 to 147407635 840 CpG island CpG island 15279
Gm46898 4 147411722 to 147413457 1735 + lncRNA gene predicted gene, 46898
Cpgi15280 4 147443020 to 147443365 345 CpG island CpG island 15280
Gm13161 4 147443471 to 147444029 558 + pseudogene predicted gene 13161
Vmn2r-ps19 4 147444330 to 147444584 254 + pseudogene vomeronasal 2, receptor, pseudogene 19
Zfp982 4 147500686 to 147513420 12734 + protein coding gene zinc finger protein 982
Gm15951 4 147520468 to 147520867 399 - pseudogene predicted gene 15951
Vmn2r-ps20 4 147521521 to 147521814 293 + pseudogene vomeronasal 2, receptor, pseudogene 20
Gm13141 4 147527719 to 147528174 455 - pseudogene predicted gene 13141
Gm16503 4 147540218 to 147543500 3282 + protein coding gene predicted gene 16503
Tssr40230 4 147553257 to 147553276 19 + TSS region transcription start site region 40230
Zfp985 4 147553277 to 147585198 31921 + protein coding gene zinc finger protein 985
Zfp979 4 147611936 to 147642508 30572 - protein coding gene zinc finger protein 979
Gm13155 4 147624240 to 147624885 645 - pseudogene predicted gene 13155
Gm16211 4 147668518 to 147670854 2336 - lincRNA gene predicted gene 16211
Zfp534 4 147674225 to 147702631 28406 - protein coding gene zinc finger protein 534
Tssr44546 4 147698488 to 147698503 15 - TSS region transcription start site region 44546
Gm13137 4 147732788 to 147733132 344 + pseudogene predicted gene 13137
Gm13136 4 147735477 to 147738426 2949 - pseudogene predicted gene 13136
Cpgi15281 4 147738705 to 147739254 549 CpG island CpG island 15281
Gm13148 4 147745817 to 147746561 744 - pseudogene predicted gene 13148
Zfp984 4 147753974 to 147809788 55814 - protein coding gene zinc finger protein 984
Tssr44547 4 147778327 to 147778338 11 - TSS region transcription start site region 44547
Gm20707 4 147782319 to 147809840 27521 - lincRNA gene predicted gene 20707
Tssr44548 4 147809802 to 147809821 19 - TSS region transcription start site region 44548
Tssr44549 4 147814671 to 147814675 4 - TSS region transcription start site region 44549
Rps19-ps3 4 147821777 to 147822202 425 - pseudogene ribosomal protein S19, pseudogene 3
Zfp933 4 147822986 to 147848366 25380 - protein coding gene zinc finger protein 933
Tssr40231 4 147847919 to 147847936 17 + TSS region transcription start site region 40231
Tssr44550 4 147848358 to 147848425 67 - TSS region transcription start site region 44550
Miip 4 147860778 to 147868719 7941 - protein coding gene migration and invasion inhibitory protein
Cpgi15282 4 147868329 to 147869161 832 CpG island CpG island 15282
Tssr44551 4 147868469 to 147868551 82 - TSS region transcription start site region 44551
Tssr44552 4 147868608 to 147868622 14 - TSS region transcription start site region 44552
Tssr44553 4 147868631 to 147868695 64 - TSS region transcription start site region 44553
Tssr40232 4 147868787 to 147868825 38 + TSS region transcription start site region 40232
Tssr40233 4 147868830 to 147868896 66 + TSS region transcription start site region 40233
Fv1 4 147868979 to 147870358 1379 + protein coding gene Friend virus susceptibility 1
Mfn2 4 147873599 to 147904704 31105 - protein coding gene mitofusin 2
D4Mit206 4 147877342 to 147877489 147 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 206
Gm13156 4 147893673 to 147893993 320 + pseudogene predicted gene 13156
D4Nimr1 4 147895316 to 147895539 223 DNA segment DNA segment, Chr 4, National Institute of Medical Research 1
Tssr44554 4 147902986 to 147903005 19 - TSS region transcription start site region 44554
Tssr44555 4 147903007 to 147903027 20 - TSS region transcription start site region 44555
Tssr44556 4 147903721 to 147903726 5 - TSS region transcription start site region 44556
Tssr44557 4 147903761 to 147903776 15 - TSS region transcription start site region 44557
Cpgi15283 4 147904361 to 147905112 751 CpG island CpG island 15283
Tssr44558 4 147904627 to 147904638 11 - TSS region transcription start site region 44558
Tssr44559 4 147904643 to 147904658 15 - TSS region transcription start site region 44559
Tssr44560 4 147904680 to 147904710 30 - TSS region transcription start site region 44560
Tssr44561 4 147904785 to 147904799 14 - TSS region transcription start site region 44561
Tssr44562 4 147904808 to 147904864 56 - TSS region transcription start site region 44562
Tssr44563 4 147904867 to 147904923 56 - TSS region transcription start site region 44563
Plod1 4 147909753 to 147936767 27014 - protein coding gene procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1
Tssr44564 4 147910766 to 147910779 13 - TSS region transcription start site region 44564
Tssr44565 4 147932769 to 147932788 19 - TSS region transcription start site region 44565
Cpgi15284 4 147936248 to 147936969 721 CpG island CpG island 15284
Tssr44566 4 147936713 to 147936733 20 - TSS region transcription start site region 44566
Tssr44567 4 147936761 to 147936768 7 - TSS region transcription start site region 44567
Tssr40234 4 147936813 to 147936852 39 + TSS region transcription start site region 40234
Cpgi15285 4 147940647 to 147942180 1533 CpG island CpG island 15285
Tssr40235 4 147940859 to 147940920 61 + TSS region transcription start site region 40235
2510039O18Rik 4 147940895 to 147947314 6419 + protein coding gene RIKEN cDNA 2510039O18 gene
Tssr40236 4 147940926 to 147940931 5 + TSS region transcription start site region 40236
Nppb 4 147985788 to 147987205 1417 + protein coding gene natriuretic peptide type B
Tssr40237 4 147985892 to 147985903 11 + TSS region transcription start site region 40237
Tssr40238 4 147986043 to 147986049 6 + TSS region transcription start site region 40238
Wght7 4 148000000 to 91000000 -57000000 QTL weight 7
Tssr40239 4 148000633 to 148000641 8 + TSS region transcription start site region 40239
Nppa 4 148000722 to 148002074 1352 + protein coding gene natriuretic peptide type A
Tssr40240 4 148000735 to 148000754 19 + TSS region transcription start site region 40240
Tssr40241 4 148001091 to 148001111 20 + TSS region transcription start site region 40241
Gm13054 4 148001091 to 148004014 2923 - antisense lncRNA gene predicted gene 13054
Tssr40242 4 148001325 to 148001338 13 + TSS region transcription start site region 40242
Tssr40243 4 148001792 to 148001804 12 + TSS region transcription start site region 40243
Tssr40244 4 148001965 to 148002007 42 + TSS region transcription start site region 40244
Tssr44568 4 148002063 to 148002075 12 - TSS region transcription start site region 44568
Clcn6 4 148004259 to 148038821 34562 - protein coding gene chloride channel, voltage-sensitive 6
Gm13207 4 148031554 to 148032323 769 + pseudogene predicted gene 13207
Cpgi15286 4 148038255 to 148039525 1270 CpG island CpG island 15286
Tssr44569 4 148038552 to 148038567 15 - TSS region transcription start site region 44569
Tssr44570 4 148038769 to 148038816 47 - TSS region transcription start site region 44570
Tssr44571 4 148038828 to 148038847 19 - TSS region transcription start site region 44571
Tssr40245 4 148039035 to 148039087 52 + TSS region transcription start site region 40245
Mthfr 4 148039077 to 148059551 20474 + protein coding gene methylenetetrahydrofolate reductase
Tssr40246 4 148039097 to 148039190 93 + TSS region transcription start site region 40246
Tssr40247 4 148041172 to 148041198 26 + TSS region transcription start site region 40247
Tssr40248 4 148044252 to 148044271 19 + TSS region transcription start site region 40248
Tssr40249 4 148044278 to 148044308 30 + TSS region transcription start site region 40249
Chchd2-ps 4 148068031 to 148068492 461 - pseudogene coiled-coil-helix-coiled-coil-helix domain containing 2, pseudogene
Tssr44572 4 148068534 to 148068537 3 - TSS region transcription start site region 44572
Gm13201 4 148071392 to 148075420 4028 - antisense lncRNA gene predicted gene 13201
Cpgi15287 4 148075161 to 148075663 502 CpG island CpG island 15287
Tssr44573 4 148075385 to 148075405 20 - TSS region transcription start site region 44573
Tssr44574 4 148075416 to 148075423 7 - TSS region transcription start site region 44574
Tssr44575 4 148075443 to 148075452 9 - TSS region transcription start site region 44575
Agtrap 4 148077061 to 148088031 10970 - protein coding gene angiotensin II, type I receptor-associated protein
Tssr44576 4 148079375 to 148079396 21 - TSS region transcription start site region 44576
Tssr44577 4 148080241 to 148080254 13 - TSS region transcription start site region 44577
Tssr44578 4 148084267 to 148084294 27 - TSS region transcription start site region 44578
Tssr40250 4 148085852 to 148085876 24 + TSS region transcription start site region 40250
Cpgi15288 4 148087677 to 148088551 874 CpG island CpG island 15288
Tssr44579 4 148087961 to 148088027 66 - TSS region transcription start site region 44579
Tssr44580 4 148088036 to 148088056 20 - TSS region transcription start site region 44580
Tssr44581 4 148088058 to 148088069 11 - TSS region transcription start site region 44581
Tssr44582 4 148089181 to 148089190 9 - TSS region transcription start site region 44582
Tssr44583 4 148089209 to 148089218 9 - TSS region transcription start site region 44583
Draxin 4 148098437 to 148130698 32261 - protein coding gene dorsal inhibitory axon guidance protein
Tssr44584 4 148100839 to 148100885 46 - TSS region transcription start site region 44584
Cpgi15289 4 148102182 to 148102607 425 CpG island CpG island 15289
Cpgi15290 4 148114837 to 148115604 767 CpG island CpG island 15290
Cpgi15291 4 148130072 to 148131792 1720 CpG island CpG island 15291
Mad2l2 4 148130384 to 148145699 15315 + protein coding gene MAD2 mitotic arrest deficient-like 2
Tssr44585 4 148130638 to 148130649 11 - TSS region transcription start site region 44585
Tssr44586 4 148130651 to 148130672 21 - TSS region transcription start site region 44586
Tssr44587 4 148130678 to 148130706 28 - TSS region transcription start site region 44587
Tssr40251 4 148130742 to 148130772 30 + TSS region transcription start site region 40251
Tssr40252 4 148130775 to 148130830 55 + TSS region transcription start site region 40252
Tssr1378 4 148130833 to 148130863 30 + TSS region transcription start site region 1378
Tssr40253 4 148130883 to 148130895 12 + TSS region transcription start site region 40253
Cpgi15292 4 148139866 to 148141063 1197 CpG island CpG island 15292
Tssr40254 4 148140480 to 148140507 27 + TSS region transcription start site region 40254
Tssr40255 4 148140511 to 148140552 41 + TSS region transcription start site region 40255
Tssr40256 4 148140682 to 148140698 16 + TSS region transcription start site region 40256
Tssr40257 4 148140699 to 148140767 68 + TSS region transcription start site region 40257
Tssr40258 4 148140771 to 148140774 3 + TSS region transcription start site region 40258
Tssr40259 4 148140783 to 148140790 7 + TSS region transcription start site region 40259
Tssr40260 4 148140795 to 148140811 16 + TSS region transcription start site region 40260
Tssr40261 4 148140978 to 148141008 30 + TSS region transcription start site region 40261
Fbxo6 4 148145716 to 148152135 6419 - protein coding gene F-box protein 6
Mir7022 4 148146936 to 148146996 60 - miRNA gene microRNA 7022
Tssr44588 4 148148896 to 148148905 9 - TSS region transcription start site region 44588
Tssr40262 4 148149218 to 148149219 1 + TSS region transcription start site region 40262
Cpgi15293 4 148149345 to 148149567 222 CpG island CpG island 15293
Tssr44589 4 148149645 to 148149650 5 - TSS region transcription start site region 44589
Tssr44590 4 148149684 to 148149696 12 - TSS region transcription start site region 44590
Cpgi15294 4 148151382 to 148152366 984 CpG island CpG island 15294
Tssr44591 4 148151714 to 148151747 33 - TSS region transcription start site region 44591
Tssr44592 4 148151878 to 148151934 56 - TSS region transcription start site region 44592
Tssr44593 4 148151975 to 148152002 27 - TSS region transcription start site region 44593
Tssr44594 4 148152107 to 148152146 39 - TSS region transcription start site region 44594
Tssr44595 4 148152155 to 148152176 21 - TSS region transcription start site region 44595
Fbxo44 4 148152799 to 148160137 7338 - protein coding gene F-box protein 44
Cpgi15295 4 148159547 to 148161044 1497 CpG island CpG island 15295
Tssr44596 4 148159571 to 148159602 31 - TSS region transcription start site region 44596
Tssr44597 4 148159808 to 148159819 11 - TSS region transcription start site region 44597
Tssr44598 4 148159820 to 148159837 17 - TSS region transcription start site region 44598
Tssr44599 4 148159838 to 148159930 92 - TSS region transcription start site region 44599
Tssr44600 4 148160031 to 148160072 41 - TSS region transcription start site region 44600
Tssr40263 4 148160147 to 148160196 49 + TSS region transcription start site region 40263
Tssr40264 4 148160613 to 148160630 17 + TSS region transcription start site region 40264
Fbxo2 4 148160621 to 148166424 5803 + protein coding gene F-box protein 2
Tssr40265 4 148160631 to 148160652 21 + TSS region transcription start site region 40265
Tssr40266 4 148160656 to 148160680 24 + TSS region transcription start site region 40266
Cpgi15296 4 148163964 to 148165084 1120 CpG island CpG island 15296
Tssr40267 4 148164217 to 148164239 22 + TSS region transcription start site region 40267
Cpgi15297 4 148165651 to 148166988 1337 CpG island CpG island 15297
Tssr44601 4 148166366 to 148166373 7 - TSS region transcription start site region 44601
Cpgi15298 4 148169676 to 148169955 279 CpG island CpG island 15298
Tssr40268 4 148193050 to 148193054 4 + TSS region transcription start site region 40268
Gm32603 4 148208113 to 148214764 6651 - lncRNA gene predicted gene, 32603
Tssr44602 4 148214738 to 148214749 11 - TSS region transcription start site region 44602
Cpgi15299 4 148229763 to 148230014 251 CpG island CpG island 15299
Disp3 4 148240264 to 148287965 47701 - protein coding gene dispatched RND transporter family member 3
Cpgi15300 4 148271175 to 148272303 1128 CpG island CpG island 15300
Cpgi15301 4 148286720 to 148288782 2062 CpG island CpG island 15301
Tssr44603 4 148287927 to 148287954 27 - TSS region transcription start site region 44603
Gm13206 4 148306853 to 148316569 9716 + lincRNA gene predicted gene 13206
Tssr40269 4 148332307 to 148332311 4 + TSS region transcription start site region 40269
Tssr40270 4 148333479 to 148333485 6 + TSS region transcription start site region 40270
Gm13200 4 148356379 to 148359460 3081 - lincRNA gene predicted gene 13200
Tssr44604 4 148358862 to 148358871 9 - TSS region transcription start site region 44604
Tssr40271 4 148375010 to 148375012 2 + TSS region transcription start site region 40271
Cpgi15302 4 148392014 to 148392170 156 CpG island CpG island 15302
Tssr40272 4 148418440 to 148418446 6 + TSS region transcription start site region 40272
Ubiad1 4 148434497 to 148444751 10254 - protein coding gene UbiA prenyltransferase domain containing 1
Gm23303 4 148443334 to 148443485 151 - snRNA gene predicted gene, 23303
Cpgi15303 4 148444178 to 148445006 828 CpG island CpG island 15303
Tssr44605 4 148444455 to 148444499 44 - TSS region transcription start site region 44605
Tssr44606 4 148444733 to 148444739 6 - TSS region transcription start site region 44606
Tssr44607 4 148444744 to 148444783 39 - TSS region transcription start site region 44607
Cpgi15304 4 148448121 to 148449252 1131 CpG island CpG island 15304
Tssr40273 4 148448552 to 148448563 11 + TSS region transcription start site region 40273
Tssr40274 4 148448564 to 148448598 34 + TSS region transcription start site region 40274
Tssr40275 4 148448605 to 148448637 32 + TSS region transcription start site region 40275
Mtor 4 148448611 to 148557683 109072 + protein coding gene mechanistic target of rapamycin kinase
Tssr44608 4 148458872 to 148458883 11 - TSS region transcription start site region 44608