Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:147323518-148015854

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86 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
C230088H06Rik 4 147018235 to 147492201 473966 - lincRNA gene RIKEN cDNA C230088H06 gene
Gm26624 4 147136278 to 147457019 320741 + lincRNA gene predicted gene, 26624
Zfp988 4 147305674 to 147333734 28060 + protein coding gene zinc finger protein 988
Tssr40229 4 147361280 to 147361302 22 + TSS region transcription start site region 40229
Zfp978 4 147361303 to 147391004 29701 + protein coding gene zinc finger protein 978
Gm8178 4 147378929 to 147379574 645 + pseudogene predicted gene 8178
4930546J17Rik 4 147397167 to 147399678 2511 unclassified gene RIKEN cDNA 4930546J17 gene
Gm46897 4 147399771 to 147407631 7860 + lncRNA gene predicted gene, 46897
Cpgi15279 4 147406795 to 147407635 840 CpG island CpG island 15279
Gm46898 4 147411722 to 147413457 1735 + lncRNA gene predicted gene, 46898
Cpgi15280 4 147443020 to 147443365 345 CpG island CpG island 15280
Gm13161 4 147443471 to 147444029 558 + pseudogene predicted gene 13161
Vmn2r-ps19 4 147444330 to 147444584 254 + pseudogene vomeronasal 2, receptor, pseudogene 19
Zfp982 4 147500686 to 147513420 12734 + protein coding gene zinc finger protein 982
Gm15951 4 147520468 to 147520867 399 - pseudogene predicted gene 15951
Vmn2r-ps20 4 147521521 to 147521814 293 + pseudogene vomeronasal 2, receptor, pseudogene 20
Gm13141 4 147527719 to 147528174 455 - pseudogene predicted gene 13141
Gm16503 4 147540218 to 147543500 3282 + protein coding gene predicted gene 16503
Tssr40230 4 147553257 to 147553276 19 + TSS region transcription start site region 40230
Zfp985 4 147553277 to 147585198 31921 + protein coding gene zinc finger protein 985
Zfp979 4 147611936 to 147642508 30572 - protein coding gene zinc finger protein 979
Gm13155 4 147624240 to 147624885 645 - pseudogene predicted gene 13155
Gm16211 4 147668518 to 147670854 2336 - lincRNA gene predicted gene 16211
Zfp534 4 147674225 to 147702631 28406 - protein coding gene zinc finger protein 534
Tssr44546 4 147698488 to 147698503 15 - TSS region transcription start site region 44546
Gm13137 4 147732788 to 147733132 344 + pseudogene predicted gene 13137
Gm13136 4 147735477 to 147738426 2949 - pseudogene predicted gene 13136
Cpgi15281 4 147738705 to 147739254 549 CpG island CpG island 15281
Gm13148 4 147745817 to 147746561 744 - pseudogene predicted gene 13148
Zfp984 4 147753974 to 147809788 55814 - protein coding gene zinc finger protein 984
Tssr44547 4 147778327 to 147778338 11 - TSS region transcription start site region 44547
Gm20707 4 147782319 to 147809840 27521 - lincRNA gene predicted gene 20707
Tssr44548 4 147809802 to 147809821 19 - TSS region transcription start site region 44548
Tssr44549 4 147814671 to 147814675 4 - TSS region transcription start site region 44549
Rps19-ps3 4 147821777 to 147822202 425 - pseudogene ribosomal protein S19, pseudogene 3
Zfp933 4 147822986 to 147848366 25380 - protein coding gene zinc finger protein 933
Tssr40231 4 147847919 to 147847936 17 + TSS region transcription start site region 40231
Tssr44550 4 147848358 to 147848425 67 - TSS region transcription start site region 44550
Miip 4 147860778 to 147868719 7941 - protein coding gene migration and invasion inhibitory protein
Cpgi15282 4 147868329 to 147869161 832 CpG island CpG island 15282
Tssr44551 4 147868469 to 147868551 82 - TSS region transcription start site region 44551
Tssr44552 4 147868608 to 147868622 14 - TSS region transcription start site region 44552
Tssr44553 4 147868631 to 147868695 64 - TSS region transcription start site region 44553
Tssr40232 4 147868787 to 147868825 38 + TSS region transcription start site region 40232
Tssr40233 4 147868830 to 147868896 66 + TSS region transcription start site region 40233
Fv1 4 147868979 to 147870358 1379 + protein coding gene Friend virus susceptibility 1
Mfn2 4 147873599 to 147904704 31105 - protein coding gene mitofusin 2
D4Mit206 4 147877342 to 147877489 147 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 206
Gm13156 4 147893673 to 147893993 320 + pseudogene predicted gene 13156
D4Nimr1 4 147895316 to 147895539 223 DNA segment DNA segment, Chr 4, National Institute of Medical Research 1
Tssr44554 4 147902986 to 147903005 19 - TSS region transcription start site region 44554
Tssr44555 4 147903007 to 147903027 20 - TSS region transcription start site region 44555
Tssr44556 4 147903721 to 147903726 5 - TSS region transcription start site region 44556
Tssr44557 4 147903761 to 147903776 15 - TSS region transcription start site region 44557
Cpgi15283 4 147904361 to 147905112 751 CpG island CpG island 15283
Tssr44558 4 147904627 to 147904638 11 - TSS region transcription start site region 44558
Tssr44559 4 147904643 to 147904658 15 - TSS region transcription start site region 44559
Tssr44560 4 147904680 to 147904710 30 - TSS region transcription start site region 44560
Tssr44561 4 147904785 to 147904799 14 - TSS region transcription start site region 44561
Tssr44562 4 147904808 to 147904864 56 - TSS region transcription start site region 44562
Tssr44563 4 147904867 to 147904923 56 - TSS region transcription start site region 44563
Plod1 4 147909753 to 147936767 27014 - protein coding gene procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1
Tssr44564 4 147910766 to 147910779 13 - TSS region transcription start site region 44564
Tssr44565 4 147932769 to 147932788 19 - TSS region transcription start site region 44565
Cpgi15284 4 147936248 to 147936969 721 CpG island CpG island 15284
Tssr44566 4 147936713 to 147936733 20 - TSS region transcription start site region 44566
Tssr44567 4 147936761 to 147936768 7 - TSS region transcription start site region 44567
Tssr40234 4 147936813 to 147936852 39 + TSS region transcription start site region 40234
Cpgi15285 4 147940647 to 147942180 1533 CpG island CpG island 15285
Tssr40235 4 147940859 to 147940920 61 + TSS region transcription start site region 40235
2510039O18Rik 4 147940895 to 147947314 6419 + protein coding gene RIKEN cDNA 2510039O18 gene
Tssr40236 4 147940926 to 147940931 5 + TSS region transcription start site region 40236
Nppb 4 147985788 to 147987205 1417 + protein coding gene natriuretic peptide type B
Tssr40237 4 147985892 to 147985903 11 + TSS region transcription start site region 40237
Tssr40238 4 147986043 to 147986049 6 + TSS region transcription start site region 40238
Wght7 4 148000000 to 91000000 -57000000 QTL weight 7
Tssr40239 4 148000633 to 148000641 8 + TSS region transcription start site region 40239
Nppa 4 148000722 to 148002074 1352 + protein coding gene natriuretic peptide type A
Tssr40240 4 148000735 to 148000754 19 + TSS region transcription start site region 40240
Tssr40241 4 148001091 to 148001111 20 + TSS region transcription start site region 40241
Gm13054 4 148001091 to 148004014 2923 - antisense lncRNA gene predicted gene 13054
Tssr40242 4 148001325 to 148001338 13 + TSS region transcription start site region 40242
Tssr40243 4 148001792 to 148001804 12 + TSS region transcription start site region 40243
Tssr40244 4 148001965 to 148002007 42 + TSS region transcription start site region 40244
Tssr44568 4 148002063 to 148002075 12 - TSS region transcription start site region 44568
Clcn6 4 148004259 to 148038821 34562 - protein coding gene chloride channel, voltage-sensitive 6