Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:145397373-149138108

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405 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lfibq20 4 144973265 to 148822969 3849704 QTL liver fibrosis QTL 20
Gm13224 4 145404306 to 145404399 93 + pseudogene predicted gene 13224
Platr16 4 145410245 to 145449756 39511 + unclassified non-coding RNA gene pluripotency associated transcript 16
Tssr40219 4 145410280 to 145410317 37 + TSS region transcription start site region 40219
Tssr40220 4 145432421 to 145432444 23 + TSS region transcription start site region 40220
Gm42346 4 145433410 to 145450774 17364 + pseudogene predicted gene, 42346
Tssr40221 4 145434683 to 145434729 46 + TSS region transcription start site region 40221
Gm13230 4 145446740 to 145450888 4148 + pseudogene predicted gene 13230
Gm13223 4 145455633 to 145456227 594 + pseudogene predicted gene 13223
Cpgi15270 4 145463623 to 145464283 660 CpG island CpG island 15270
Smarca5-ps 4 145464204 to 145467420 3216 + pseudogene SWI/SNF related, matrix associated, actin depenent ragulator of chromatin, subfamily a, member 5, pseudogene
Gm13229 4 145469711 to 145470050 339 - pseudogene predicted gene 13229
Zfp990 4 145510759 to 145538956 28197 + protein coding gene zinc finger protein 990
Gm21978 4 145560629 to 145560791 162 + pseudogene predicted gene 21978
Tssr40222 4 145564614 to 145564646 32 + TSS region transcription start site region 40222
Gm13228 4 145574528 to 145575161 633 + pseudogene predicted gene 13228
Gm13226 4 145576889 to 145577292 403 - pseudogene predicted gene 13226
Tssr44545 4 145577334 to 145577336 2 - TSS region transcription start site region 44545
Gm13222 4 145579036 to 145579173 137 + pseudogene predicted gene 13222
Tssr40223 4 145585140 to 145585158 18 + TSS region transcription start site region 40223
Gm13212 4 145585172 to 145625345 40173 + protein coding gene predicted gene 13212
Tssr40224 4 145585189 to 145585211 22 + TSS region transcription start site region 40224
Gm13234 4 145632504 to 145633250 746 + pseudogene predicted gene 13234
Cpgi15271 4 145640417 to 145640668 251 CpG island CpG island 15271
Gm13231 4 145641357 to 145644399 3042 + pseudogene predicted gene 13231
Gm13249 4 145646771 to 145647115 344 - pseudogene predicted gene 13249
Tssr40225 4 145670664 to 145670677 13 + TSS region transcription start site region 40225
Zfp980 4 145670697 to 145704437 33740 + protein coding gene zinc finger protein 980
Gm13239 4 145689855 to 145690442 587 + pseudogene predicted gene 13239
Gm26763 4 145700506 to 145712426 11920 - lincRNA gene predicted gene, 26763
Gm13232 4 145729581 to 145730212 631 - pseudogene predicted gene 13232
Gm13244 4 145745746 to 145747401 1655 + pseudogene predicted gene 13244
Gm13236 4 145762929 to 145764958 2029 + lincRNA gene predicted gene 13236
Gm13243 4 145774719 to 145775283 564 + pseudogene predicted gene 13243
Vmn2r-ps15 4 145775612 to 145775988 376 + pseudogene vomeronasal 2, receptor, pseudogene 15
Znf41-ps 4 145825237 to 145829942 4705 + pseudogene ZNF41, pseudogene
Cpgi15272 4 145837181 to 145837340 159 CpG island CpG island 15272
Gm13238 4 145837219 to 145837992 773 + pseudogene predicted gene 13238
Gm13246 4 145844404 to 145844718 314 - pseudogene predicted gene 13246
Tssr40226 4 145864065 to 145864098 33 + TSS region transcription start site region 40226
Zfp986 4 145868794 to 145899975 31181 + protein coding gene zinc finger protein 986
Gm13036 4 146058776 to 146059517 741 + pseudogene predicted gene 13036
Cpgi15274 4 146067008 to 146067932 924 CpG island CpG island 15274
Gm13034 4 146067524 to 146068718 1194 + pseudogene predicted gene 13034
Gm13035 4 146073257 to 146073598 341 - pseudogene predicted gene 13035
Zfp987 4 146097312 to 146126624 29312 + protein coding gene zinc finger protein 987
Tssr40227 4 146101614 to 146101638 24 + TSS region transcription start site region 40227
Gm26573 4 146153456 to 147024959 871503 - lincRNA gene predicted gene, 26573
Zfp600 4 146156827 to 146198756 41929 + protein coding gene zinc finger protein 600
Gm13165 4 146167522 to 146205732 38210 - antisense lncRNA gene predicted gene 13165
Gm13170 4 146178126 to 146178752 626 + pseudogene predicted gene 13170
Gm13167 4 146224036 to 146224613 577 - pseudogene predicted gene 13167
Gm13169 4 146239954 to 146241630 1676 + pseudogene predicted gene 13169
Gm13166 4 146251829 to 146278434 26605 + lincRNA gene predicted gene 13166
Gm13168 4 146263559 to 146264190 631 + pseudogene predicted gene 13168
Vmn2r-ps17 4 146264521 to 146264895 374 + pseudogene vomeronasal 2, receptor, pseudogene 17
Tssr1370 4 146431032 to 146431044 12 + TSS region transcription start site region 1370
Zfp992 4 146449030 to 146469440 20410 + protein coding gene zinc finger protein 992
Cpgi15273 4 146475211 to 146475454 243 CpG island CpG island 15273
Gm13241 4 146475332 to 146476111 779 + pseudogene predicted gene 13241
Gm13245 4 146480667 to 146480926 259 + pseudogene predicted gene 13245
Tssr1371 4 146501988 to 146502002 14 + TSS region transcription start site region 1371
Zfp981 4 146502027 to 146539395 37368 + protein coding gene zinc finger protein 981
Gm26880 4 146509094 to 146511764 2670 - lincRNA gene predicted gene, 26880
Tssr1372 4 146514981 to 146514989 8 + TSS region transcription start site region 1372
1700095A21Rik 4 146519039 to 146546873 27834 - antisense lncRNA gene RIKEN cDNA 1700095A21 gene
Gm13237 4 146564453 to 146565087 634 - pseudogene predicted gene 13237
Gm13233 4 146580629 to 146582312 1683 + pseudogene predicted gene 13233
Gm13240 4 146604212 to 146604776 564 + pseudogene predicted gene 13240
Vmn2r-ps16 4 146605105 to 146605481 376 + pseudogene vomeronasal 2, receptor, pseudogene 16
Zfp993 4 146610961 to 146658160 47199 + protein coding gene zinc finger protein 993
Gm30681 4 146727752 to 146729785 2033 - lncRNA gene predicted gene, 30681
Gm20875 4 146749615 to 146750519 904 - pseudogene predicted gene, 20875
Gm46896 4 146816572 to 146821704 5132 - pseudogene predicted gene, 46896
Gm21082 4 146828929 to 146838175 9246 - pseudogene predicted gene, 21082
Gm21411 4 146892406 to 146909590 17184 - unclassified gene predicted gene, 21411
Tssr1373 4 146904957 to 146904970 13 - TSS region transcription start site region 1373
Tssr1374 4 146909564 to 146909586 22 - TSS region transcription start site region 1374
Tssr1375 4 146932417 to 146932447 30 + TSS region transcription start site region 1375
Tssr1376 4 146932503 to 146932520 17 + TSS region transcription start site region 1376
Gm20760 4 146932742 to 146933389 647 + pseudogene predicted gene, 20760
Cpgi15275 4 146941739 to 146942676 937 CpG island CpG island 15275
Gm13140 4 146942476 to 146945825 3349 + pseudogene predicted gene 13140
Gm13149 4 146948160 to 146948498 338 - pseudogene predicted gene 13149
Zfp989 4 146971976 to 146990755 18779 + protein coding gene zinc finger protein 989
Gm46895 4 146997669 to 147002801 5132 + pseudogene predicted gene, 46895
C230088H06Rik 4 147018235 to 147492201 473966 - lincRNA gene RIKEN cDNA C230088H06 gene
Rex2 4 147021850 to 147060794 38944 + protein coding gene reduced expression 2
Gm13153 4 147040685 to 147041321 636 + pseudogene predicted gene 13153
4933438K21Rik 4 147063366 to 147068436 5070 - antisense lncRNA gene RIKEN cDNA 4933438K21 gene
Gm13160 4 147086358 to 147086984 626 - pseudogene predicted gene 13160
Gm13142 4 147102327 to 147103981 1654 + pseudogene predicted gene 13142
Tssr1377 4 147104009 to 147104038 29 + TSS region transcription start site region 1377
Gm13162 4 147125256 to 147125816 560 + pseudogene predicted pseudogene 13162
Vmn2r-ps18 4 147126167 to 147126435 268 + pseudogene vomeronasal 2, receptor, pseudogene 18
Zfp991 4 147132093 to 147180579 48486 + protein coding gene zinc finger protein 991
Gm26624 4 147136278 to 147457019 320741 + lincRNA gene predicted gene, 26624
Cpgi15276 4 147187508 to 147187841 333 CpG island CpG island 15276
Gm13146 4 147187708 to 147188481 773 + pseudogene predicted gene 13146
Gm13163 4 147194876 to 147195211 335 - pseudogene predicted gene 13163
Cpgi15277 4 147219496 to 147219694 198 CpG island CpG island 15277
Gm42368 4 147221860 to 147226323 4463 + protein coding gene predicted gene, 42368
Gm13147 4 147230284 to 147259338 29054 + pseudogene predicted gene 13147
Tssr40228 4 147234322 to 147234330 8 + TSS region transcription start site region 40228
Gm13158 4 147267373 to 147268108 735 + pseudogene predicted gene 13158
Cpgi15278 4 147275086 to 147276067 981 CpG island CpG island 15278
Gm13135 4 147275976 to 147279096 3120 + pseudogene predicted gene 13135
Gm13144 4 147281446 to 147281790 344 - pseudogene predicted gene 13144
Zfp988 4 147305674 to 147333734 28060 + protein coding gene zinc finger protein 988
Tssr40229 4 147361280 to 147361302 22 + TSS region transcription start site region 40229
Zfp978 4 147361303 to 147391004 29701 + protein coding gene zinc finger protein 978
Gm8178 4 147378929 to 147379574 645 + pseudogene predicted gene 8178
4930546J17Rik 4 147397167 to 147399678 2511 unclassified gene RIKEN cDNA 4930546J17 gene
Gm46897 4 147399771 to 147407631 7860 + lncRNA gene predicted gene, 46897
Cpgi15279 4 147406795 to 147407635 840 CpG island CpG island 15279
Gm46898 4 147411722 to 147413457 1735 + lncRNA gene predicted gene, 46898
Cpgi15280 4 147443020 to 147443365 345 CpG island CpG island 15280
Gm13161 4 147443471 to 147444029 558 + pseudogene predicted gene 13161
Vmn2r-ps19 4 147444330 to 147444584 254 + pseudogene vomeronasal 2, receptor, pseudogene 19
Zfp982 4 147500686 to 147513420 12734 + protein coding gene zinc finger protein 982
Gm15951 4 147520468 to 147520867 399 - pseudogene predicted gene 15951
Vmn2r-ps20 4 147521521 to 147521814 293 + pseudogene vomeronasal 2, receptor, pseudogene 20
Gm13141 4 147527719 to 147528174 455 - pseudogene predicted gene 13141
Gm16503 4 147540218 to 147543500 3282 + protein coding gene predicted gene 16503
Tssr40230 4 147553257 to 147553276 19 + TSS region transcription start site region 40230
Zfp985 4 147553277 to 147585198 31921 + protein coding gene zinc finger protein 985
Zfp979 4 147611936 to 147642508 30572 - protein coding gene zinc finger protein 979
Gm13155 4 147624240 to 147624885 645 - pseudogene predicted gene 13155
Gm16211 4 147668518 to 147670854 2336 - lincRNA gene predicted gene 16211
Zfp534 4 147674225 to 147702631 28406 - protein coding gene zinc finger protein 534
Tssr44546 4 147698488 to 147698503 15 - TSS region transcription start site region 44546
Gm13137 4 147732788 to 147733132 344 + pseudogene predicted gene 13137
Gm13136 4 147735477 to 147738426 2949 - pseudogene predicted gene 13136
Cpgi15281 4 147738705 to 147739254 549 CpG island CpG island 15281
Gm13148 4 147745817 to 147746561 744 - pseudogene predicted gene 13148
Zfp984 4 147753974 to 147809788 55814 - protein coding gene zinc finger protein 984
Tssr44547 4 147778327 to 147778338 11 - TSS region transcription start site region 44547
Gm20707 4 147782319 to 147809840 27521 - lincRNA gene predicted gene 20707
Tssr44548 4 147809802 to 147809821 19 - TSS region transcription start site region 44548
Tssr44549 4 147814671 to 147814675 4 - TSS region transcription start site region 44549
Rps19-ps3 4 147821777 to 147822202 425 - pseudogene ribosomal protein S19, pseudogene 3
Zfp933 4 147822986 to 147848366 25380 - protein coding gene zinc finger protein 933
Tssr40231 4 147847919 to 147847936 17 + TSS region transcription start site region 40231
Tssr44550 4 147848358 to 147848425 67 - TSS region transcription start site region 44550
Miip 4 147860778 to 147868719 7941 - protein coding gene migration and invasion inhibitory protein
Cpgi15282 4 147868329 to 147869161 832 CpG island CpG island 15282
Tssr44551 4 147868469 to 147868551 82 - TSS region transcription start site region 44551
Tssr44552 4 147868608 to 147868622 14 - TSS region transcription start site region 44552
Tssr44553 4 147868631 to 147868695 64 - TSS region transcription start site region 44553
Tssr40232 4 147868787 to 147868825 38 + TSS region transcription start site region 40232
Tssr40233 4 147868830 to 147868896 66 + TSS region transcription start site region 40233
Fv1 4 147868979 to 147870358 1379 + protein coding gene Friend virus susceptibility 1
Mfn2 4 147873599 to 147904704 31105 - protein coding gene mitofusin 2
D4Mit206 4 147877342 to 147877489 147 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 206
Gm13156 4 147893673 to 147893993 320 + pseudogene predicted gene 13156
D4Nimr1 4 147895316 to 147895539 223 DNA segment DNA segment, Chr 4, National Institute of Medical Research 1
Tssr44554 4 147902986 to 147903005 19 - TSS region transcription start site region 44554
Tssr44555 4 147903007 to 147903027 20 - TSS region transcription start site region 44555
Tssr44556 4 147903721 to 147903726 5 - TSS region transcription start site region 44556
Tssr44557 4 147903761 to 147903776 15 - TSS region transcription start site region 44557
Cpgi15283 4 147904361 to 147905112 751 CpG island CpG island 15283
Tssr44558 4 147904627 to 147904638 11 - TSS region transcription start site region 44558
Tssr44559 4 147904643 to 147904658 15 - TSS region transcription start site region 44559
Tssr44560 4 147904680 to 147904710 30 - TSS region transcription start site region 44560
Tssr44561 4 147904785 to 147904799 14 - TSS region transcription start site region 44561
Tssr44562 4 147904808 to 147904864 56 - TSS region transcription start site region 44562
Tssr44563 4 147904867 to 147904923 56 - TSS region transcription start site region 44563
Plod1 4 147909753 to 147936767 27014 - protein coding gene procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1
Tssr44564 4 147910766 to 147910779 13 - TSS region transcription start site region 44564
Tssr44565 4 147932769 to 147932788 19 - TSS region transcription start site region 44565
Cpgi15284 4 147936248 to 147936969 721 CpG island CpG island 15284
Tssr44566 4 147936713 to 147936733 20 - TSS region transcription start site region 44566
Tssr44567 4 147936761 to 147936768 7 - TSS region transcription start site region 44567
Tssr40234 4 147936813 to 147936852 39 + TSS region transcription start site region 40234
Cpgi15285 4 147940647 to 147942180 1533 CpG island CpG island 15285
Tssr40235 4 147940859 to 147940920 61 + TSS region transcription start site region 40235
2510039O18Rik 4 147940895 to 147947314 6419 + protein coding gene RIKEN cDNA 2510039O18 gene
Tssr40236 4 147940926 to 147940931 5 + TSS region transcription start site region 40236
Nppb 4 147985788 to 147987205 1417 + protein coding gene natriuretic peptide type B
Tssr40237 4 147985892 to 147985903 11 + TSS region transcription start site region 40237
Tssr40238 4 147986043 to 147986049 6 + TSS region transcription start site region 40238
Wght7 4 148000000 to 91000000 -57000000 QTL weight 7
Tssr40239 4 148000633 to 148000641 8 + TSS region transcription start site region 40239
Nppa 4 148000722 to 148002074 1352 + protein coding gene natriuretic peptide type A
Tssr40240 4 148000735 to 148000754 19 + TSS region transcription start site region 40240
Tssr40241 4 148001091 to 148001111 20 + TSS region transcription start site region 40241
Gm13054 4 148001091 to 148004014 2923 - antisense lncRNA gene predicted gene 13054
Tssr40242 4 148001325 to 148001338 13 + TSS region transcription start site region 40242
Tssr40243 4 148001792 to 148001804 12 + TSS region transcription start site region 40243
Tssr40244 4 148001965 to 148002007 42 + TSS region transcription start site region 40244
Tssr44568 4 148002063 to 148002075 12 - TSS region transcription start site region 44568
Clcn6 4 148004259 to 148038821 34562 - protein coding gene chloride channel, voltage-sensitive 6
Gm13207 4 148031554 to 148032323 769 + pseudogene predicted gene 13207
Cpgi15286 4 148038255 to 148039525 1270 CpG island CpG island 15286
Tssr44569 4 148038552 to 148038567 15 - TSS region transcription start site region 44569
Tssr44570 4 148038769 to 148038816 47 - TSS region transcription start site region 44570
Tssr44571 4 148038828 to 148038847 19 - TSS region transcription start site region 44571
Tssr40245 4 148039035 to 148039087 52 + TSS region transcription start site region 40245
Mthfr 4 148039077 to 148059551 20474 + protein coding gene methylenetetrahydrofolate reductase
Tssr40246 4 148039097 to 148039190 93 + TSS region transcription start site region 40246