Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:145235759-145813956

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85 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tnfrsf1b 4 145213463 to 145246870 33407 - protein coding gene tumor necrosis factor receptor superfamily, member 1b
Tssr44520 4 145235830 to 145235866 36 - TSS region transcription start site region 44520
Tssr40200 4 145236324 to 145236333 9 + TSS region transcription start site region 40200
Tssr40201 4 145236415 to 145236454 39 + TSS region transcription start site region 40201
Tssr44521 4 145236768 to 145236796 28 - TSS region transcription start site region 44521
Tssr44522 4 145237082 to 145237091 9 - TSS region transcription start site region 44522
Tssr44523 4 145238659 to 145238675 16 - TSS region transcription start site region 44523
Tssr44524 4 145240761 to 145240773 12 - TSS region transcription start site region 44524
Tssr44525 4 145240778 to 145240790 12 - TSS region transcription start site region 44525
Tssr40202 4 145241954 to 145241967 13 + TSS region transcription start site region 40202
Tssr44526 4 145244050 to 145244056 6 - TSS region transcription start site region 44526
Tssr44527 4 145245067 to 145245090 23 - TSS region transcription start site region 44527
Tssr44528 4 145245591 to 145245602 11 - TSS region transcription start site region 44528
Tssr44529 4 145245622 to 145245642 20 - TSS region transcription start site region 44529
Tssr44530 4 145245656 to 145245673 17 - TSS region transcription start site region 44530
Tssr40203 4 145245711 to 145245722 11 + TSS region transcription start site region 40203
Tssr44531 4 145245716 to 145245730 14 - TSS region transcription start site region 44531
Tssr40204 4 145245738 to 145245768 30 + TSS region transcription start site region 40204
Tssr40205 4 145245782 to 145245827 45 + TSS region transcription start site region 40205
Tssr40206 4 145245840 to 145245856 16 + TSS region transcription start site region 40206
Tssr44532 4 145246150 to 145246177 27 - TSS region transcription start site region 44532
Tssr44533 4 145246217 to 145246228 11 - TSS region transcription start site region 44533
Cpgi15268 4 145246378 to 145247063 685 CpG island CpG island 15268
Tssr1369 4 145246842 to 145246843 1 - TSS region transcription start site region 1369
Tssr44534 4 145246855 to 145246879 24 - TSS region transcription start site region 44534
Gm36233 4 145248555 to 145264971 16416 - lncRNA gene predicted gene, 36233
Tssr44535 4 145254436 to 145254460 24 - TSS region transcription start site region 44535
Tssr40207 4 145254730 to 145254779 49 + TSS region transcription start site region 40207
Tssr40208 4 145258443 to 145258451 8 + TSS region transcription start site region 40208
Tssr44536 4 145261405 to 145261419 14 - TSS region transcription start site region 44536
Tssr44537 4 145267594 to 145267618 24 - TSS region transcription start site region 44537
Tssr40209 4 145268037 to 145268059 22 + TSS region transcription start site region 40209
Tnfrsf8 4 145268976 to 145315147 46171 - protein coding gene tumor necrosis factor receptor superfamily, member 8
Tssr44538 4 145270156 to 145270167 11 - TSS region transcription start site region 44538
Tssr44539 4 145270171 to 145270185 14 - TSS region transcription start site region 44539
Tssr44540 4 145270246 to 145270265 19 - TSS region transcription start site region 44540
Tssr44541 4 145272809 to 145272836 27 - TSS region transcription start site region 44541
Tssr40210 4 145274082 to 145274091 9 + TSS region transcription start site region 40210
Tssr40211 4 145274120 to 145274140 20 + TSS region transcription start site region 40211
Tssr40212 4 145274147 to 145274162 15 + TSS region transcription start site region 40212
Tssr40213 4 145274168 to 145274179 11 + TSS region transcription start site region 40213
Tssr40214 4 145274186 to 145274202 16 + TSS region transcription start site region 40214
Tssr40215 4 145274215 to 145274230 15 + TSS region transcription start site region 40215
Tssr40216 4 145274639 to 145274643 4 + TSS region transcription start site region 40216
Tssr44542 4 145276672 to 145276688 16 - TSS region transcription start site region 44542
Tssr40217 4 145281521 to 145281558 37 + TSS region transcription start site region 40217
Tssr40218 4 145283714 to 145283759 45 + TSS region transcription start site region 40218
Tssr44543 4 145300774 to 145300777 3 - TSS region transcription start site region 44543
Cpgi15269 4 145314957 to 145315368 411 CpG island CpG island 15269
Tssr44544 4 145315143 to 145315169 26 - TSS region transcription start site region 44544
Gm13024 4 145391027 to 145391651 624 + pseudogene predicted gene 13024
Gm13224 4 145404306 to 145404399 93 + pseudogene predicted gene 13224
Platr16 4 145410245 to 145449756 39511 + unclassified non-coding RNA gene pluripotency associated transcript 16
Tssr40219 4 145410280 to 145410317 37 + TSS region transcription start site region 40219
Tssr40220 4 145432421 to 145432444 23 + TSS region transcription start site region 40220
Gm42346 4 145433410 to 145450774 17364 + pseudogene predicted gene, 42346
Tssr40221 4 145434683 to 145434729 46 + TSS region transcription start site region 40221
Gm13230 4 145446740 to 145450888 4148 + pseudogene predicted gene 13230
Gm13223 4 145455633 to 145456227 594 + pseudogene predicted gene 13223
Cpgi15270 4 145463623 to 145464283 660 CpG island CpG island 15270
Smarca5-ps 4 145464204 to 145467420 3216 + pseudogene SWI/SNF related, matrix associated, actin depenent ragulator of chromatin, subfamily a, member 5, pseudogene
Gm13229 4 145469711 to 145470050 339 - pseudogene predicted gene 13229
Zfp990 4 145510759 to 145538956 28197 + protein coding gene zinc finger protein 990
Gm21978 4 145560629 to 145560791 162 + pseudogene predicted gene 21978
Tssr40222 4 145564614 to 145564646 32 + TSS region transcription start site region 40222
Gm13228 4 145574528 to 145575161 633 + pseudogene predicted gene 13228
Gm13226 4 145576889 to 145577292 403 - pseudogene predicted gene 13226
Tssr44545 4 145577334 to 145577336 2 - TSS region transcription start site region 44545
Gm13222 4 145579036 to 145579173 137 + pseudogene predicted gene 13222
Tssr40223 4 145585140 to 145585158 18 + TSS region transcription start site region 40223
Gm13212 4 145585172 to 145625345 40173 + protein coding gene predicted gene 13212
Tssr40224 4 145585189 to 145585211 22 + TSS region transcription start site region 40224
Gm13234 4 145632504 to 145633250 746 + pseudogene predicted gene 13234
Cpgi15271 4 145640417 to 145640668 251 CpG island CpG island 15271
Gm13231 4 145641357 to 145644399 3042 + pseudogene predicted gene 13231
Gm13249 4 145646771 to 145647115 344 - pseudogene predicted gene 13249
Tssr40225 4 145670664 to 145670677 13 + TSS region transcription start site region 40225
Zfp980 4 145670697 to 145704437 33740 + protein coding gene zinc finger protein 980
Gm13239 4 145689855 to 145690442 587 + pseudogene predicted gene 13239
Gm26763 4 145700506 to 145712426 11920 - lincRNA gene predicted gene, 26763
Gm13232 4 145729581 to 145730212 631 - pseudogene predicted gene 13232
Gm13244 4 145745746 to 145747401 1655 + pseudogene predicted gene 13244
Gm13236 4 145762929 to 145764958 2029 + lincRNA gene predicted gene 13236
Gm13243 4 145774719 to 145775283 564 + pseudogene predicted gene 13243
Vmn2r-ps15 4 145775612 to 145775988 376 + pseudogene vomeronasal 2, receptor, pseudogene 15