Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:143983766-144893807

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92 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pramef17 4 143991127 to 143994369 3242 - protein coding gene PRAME family member 17
Gm13108 4 144033713 to 144035583 1870 + pseudogene predicted gene 13108
Gm13104 4 144041033 to 144042478 1445 - pseudogene predicted gene 13104
Pramel4 4 144059126 to 144069324 10198 + protein coding gene preferentially expressed antigen in melanoma like 4
Gm42367 4 144087362 to 144090870 3508 + protein coding gene predicted gene, 42367
Gm13102 4 144106474 to 144110101 3627 + protein coding gene predicted gene 13102
Oog3 4 144157556 to 144162651 5095 - protein coding gene oogenesin 3
Tssr44453 4 144162646 to 144162651 5 - TSS region transcription start site region 44453
Oog2 4 144190719 to 144196934 6215 + protein coding gene oogenesin 2
C87977 4 144206762 to 144213017 6255 - protein coding gene expressed sequence C87977
Gm13123 4 144247777 to 144248268 491 + pseudogene predicted gene 13123
Gm21012 4 144255727 to 144257581 1854 - pseudogene predicted gene, 21012
Pramel5 4 144270633 to 144280466 9833 - protein coding gene preferentially expressed antigen in melanoma like 5
Gm13120 4 144296692 to 144298137 1445 + pseudogene predicted gene 13120
Gm13130 4 144302992 to 144304859 1867 - pseudogene predicted gene 13130
Gm13128 4 144330249 to 144333465 3216 + protein coding gene predicted gene 13128
Gm13122 4 144345597 to 144346049 452 - pseudogene predicted gene 13122
Gm13119 4 144357964 to 144364419 6455 + protein coding gene predicted gene 13119
Pramef20 4 144372760 to 144377933 5173 - protein coding gene PRAME family member 20
Pramef12 4 144391674 to 144408464 16790 - protein coding gene PRAME family member 12
Tssr44454 4 144403621 to 144403640 19 - TSS region transcription start site region 44454
Tssr40137 4 144403745 to 144403750 5 + TSS region transcription start site region 40137
Pramef12os 4 144404868 to 144406301 1433 + antisense lncRNA gene PRAME family member 12, opposite strand
Tssr44455 4 144408397 to 144408440 43 - TSS region transcription start site region 44455
1700012P22Rik 4 144418189 to 144438772 20583 - protein coding gene RIKEN cDNA 1700012P22 gene
D4Mit259 4 144435695 to 144435838 143 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 259
Tssr44456 4 144438714 to 144438717 3 - TSS region transcription start site region 44456
Tssr44457 4 144438762 to 144438763 1 - TSS region transcription start site region 44457
Tssr44458 4 144438766 to 144438807 41 - TSS region transcription start site region 44458
D4Mit160 4 144450107 to 144450302 195 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 160
Gm9944 4 144453009 to 144453317 308 - protein coding gene predicted gene 9944
Aadacl3 4 144453771 to 144463756 9985 - protein coding gene arylacetamide deacetylase like 3
Tssr44459 4 144463776 to 144463788 12 - TSS region transcription start site region 44459
Gm13118 4 144498403 to 144498948 545 - pseudogene predicted gene 13118
Tssr40138 4 144519814 to 144519835 21 + TSS region transcription start site region 40138
9430007A20Rik 4 144519822 to 144529353 9531 + protein coding gene RIKEN cDNA 9430007A20 gene
Tssr40139 4 144520223 to 144520233 10 + TSS region transcription start site region 40139
Tssr40140 4 144522229 to 144522247 18 + TSS region transcription start site region 40140
Tssr40141 4 144523630 to 144523654 24 + TSS region transcription start site region 40141
Gm13121 4 144526414 to 144527042 628 - pseudogene predicted gene 13121
Tssr40142 4 144529225 to 144529232 7 + TSS region transcription start site region 40142
Tssr40143 4 144529261 to 144529268 7 + TSS region transcription start site region 40143
Tssr40144 4 144529408 to 144529423 15 + TSS region transcription start site region 40144
Tssr40145 4 144529515 to 144529521 6 + TSS region transcription start site region 40145
Tssr40146 4 144529537 to 144529563 26 + TSS region transcription start site region 40146
Gm13126 4 144545506 to 144548568 3062 - pseudogene predicted gene 13126
Gm13124 4 144555000 to 144565134 10134 - protein coding gene predicted gene 13124
Tssr44460 4 144565193 to 144565201 8 - TSS region transcription start site region 44460
Tssr44461 4 144565267 to 144565274 7 - TSS region transcription start site region 44461
Gm13127 4 144587244 to 144588632 1388 + pseudogene predicted gene 13127
Cpgi15263 4 144588126 to 144588557 431 CpG island CpG island 15263
Tssr40147 4 144613640 to 144613653 13 + TSS region transcription start site region 40147
Tssr40148 4 144613667 to 144613683 16 + TSS region transcription start site region 40148
Tssr40149 4 144613697 to 144613704 7 + TSS region transcription start site region 40149
Aadacl4 4 144613707 to 144623398 9691 + protein coding gene arylacetamide deacetylase like 4
Gm436 4 144669937 to 144686368 16431 - protein coding gene predicted gene 436
Tssr44462 4 144686409 to 144686422 13 - TSS region transcription start site region 44462
Gm13178 4 144703191 to 144721404 18213 - protein coding gene predicted gene 13178
Tssr44463 4 144721431 to 144721439 8 - TSS region transcription start site region 44463
Tssr44464 4 144721453 to 144721467 14 - TSS region transcription start site region 44464
Tssr44465 4 144721471 to 144721497 26 - TSS region transcription start site region 44465
Gm25938 4 144765627 to 144765792 165 - snRNA gene predicted gene, 25938
Gm438 4 144777204 to 144786583 9379 - protein coding gene predicted gene 438
Tssr44466 4 144786551 to 144786566 15 - TSS region transcription start site region 44466
Prdx2-ps2 4 144791837 to 144792660 823 + pseudogene peroxiredoxin 2, pseudogene 2
Gm46890 4 144811271 to 144812028 757 - pseudogene predicted gene, 46890
Gm46876 4 144855381 to 144898676 43295 - lncRNA gene predicted gene, 46876
Tssr40150 4 144891420 to 144891433 13 + TSS region transcription start site region 40150
Tssr40151 4 144891436 to 144891447 11 + TSS region transcription start site region 40151
Cpgi15264 4 144892071 to 144892881 810 CpG island CpG island 15264
Tssr44467 4 144892296 to 144892363 67 - TSS region transcription start site region 44467
Tssr44468 4 144892477 to 144892485 8 - TSS region transcription start site region 44468
Tssr40152 4 144892541 to 144892591 50 + TSS region transcription start site region 40152
Dhrs3 4 144892608 to 144927645 35037 + protein coding gene dehydrogenase/reductase (SDR family) member 3
Tssr40153 4 144892674 to 144892683 9 + TSS region transcription start site region 40153
Tssr40154 4 144892708 to 144892711 3 + TSS region transcription start site region 40154
Tssr40155 4 144892750 to 144892782 32 + TSS region transcription start site region 40155
Tssr40156 4 144892783 to 144892803 20 + TSS region transcription start site region 40156
Tssr40157 4 144892813 to 144892835 22 + TSS region transcription start site region 40157
Tssr40158 4 144892843 to 144892870 27 + TSS region transcription start site region 40158
Tssr40159 4 144892891 to 144892907 16 + TSS region transcription start site region 40159
Tssr40160 4 144893012 to 144893042 30 + TSS region transcription start site region 40160
Tssr40161 4 144893089 to 144893103 14 + TSS region transcription start site region 40161
Tssr40162 4 144893127 to 144893151 24 + TSS region transcription start site region 40162
Tssr40163 4 144893182 to 144893193 11 + TSS region transcription start site region 40163
Tssr40164 4 144893211 to 144893224 13 + TSS region transcription start site region 40164
Tssr40165 4 144893305 to 144893320 15 + TSS region transcription start site region 40165
Tssr40166 4 144893416 to 144893426 10 + TSS region transcription start site region 40166
Cpgi15265 4 144893465 to 144894147 682 CpG island CpG island 15265
Tssr40167 4 144893482 to 144893512 30 + TSS region transcription start site region 40167
Tssr40168 4 144893619 to 144893646 27 + TSS region transcription start site region 40168
Tssr40169 4 144893655 to 144893666 11 + TSS region transcription start site region 40169