Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:143570156-146970167

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345 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
BC080695 4 143567467 to 143573798 6331 + protein coding gene cDNA sequence BC080695
Gm13058 4 143595062 to 143597611 2549 - pseudogene predicted gene 13058
Gm13080 4 143611658 to 143612077 419 - pseudogene predicted gene 13080
Tssr1367 4 143612105 to 143612136 31 - TSS region transcription start site region 1367
Gm13083 4 143615003 to 143618595 3592 + protein coding gene predicted gene 13083
Gm13088 4 143653760 to 143657246 3486 - protein coding gene predicted gene 13088
Gm13085 4 143663143 to 143663787 644 - pseudogene predicted gene 13085
Gm13082 4 143671124 to 143671684 560 + pseudogene predicted gene 13082
Gm46861 4 143681880 to 143685298 3418 + pseudogene predicted gene, 46861
D4Mit353 4 143689173 to 143689290 117 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 353
Gm13089 4 143696500 to 143702711 6211 - protein coding gene predicted gene 13089
Tssr40136 4 143719449 to 143719452 3 + TSS region transcription start site region 40136
Gm13078 4 143719455 to 143729158 9703 + protein coding gene predicted gene 13078
Gm13087 4 143735298 to 143735553 255 - pseudogene predicted gene 13087
Gm13081 4 143745787 to 143751385 5598 + pseudogene predicted gene 13081
Gm13023 4 143789352 to 143795575 6223 + protein coding gene predicted gene 13023
Gm13084 4 143809245 to 143816093 6848 - protein coding gene predicted gene 13084
Gm13103 4 143846497 to 143853637 7140 + protein coding gene predicted gene 13103
Pramef6 4 143894237 to 143900380 6143 - protein coding gene PRAME family member 6
Gm13100 4 143913857 to 143916442 2585 + pseudogene predicted gene 13100
Gm13106 4 143928534 to 143930736 2202 - pseudogene predicted gene 13106
Pramef25 4 143948580 to 143951016 2436 - protein coding gene PRAME family member 25
Gm13101 4 143964518 to 143966950 2432 - protein coding gene predicted gene 13101
Pramef17 4 143991127 to 143994369 3242 - protein coding gene PRAME family member 17
Gm13108 4 144033713 to 144035583 1870 + pseudogene predicted gene 13108
Gm13104 4 144041033 to 144042478 1445 - pseudogene predicted gene 13104
Pramel4 4 144059126 to 144069324 10198 + protein coding gene preferentially expressed antigen in melanoma like 4
Gm42367 4 144087362 to 144090870 3508 + protein coding gene predicted gene, 42367
Gm13102 4 144106474 to 144110101 3627 + protein coding gene predicted gene 13102
Oog3 4 144157556 to 144162651 5095 - protein coding gene oogenesin 3
Tssr44453 4 144162646 to 144162651 5 - TSS region transcription start site region 44453
Oog2 4 144190719 to 144196934 6215 + protein coding gene oogenesin 2
C87977 4 144206762 to 144213017 6255 - protein coding gene expressed sequence C87977
Gm13123 4 144247777 to 144248268 491 + pseudogene predicted gene 13123
Gm21012 4 144255727 to 144257581 1854 - pseudogene predicted gene, 21012
Pramel5 4 144270633 to 144280466 9833 - protein coding gene preferentially expressed antigen in melanoma like 5
Gm13120 4 144296692 to 144298137 1445 + pseudogene predicted gene 13120
Gm13130 4 144302992 to 144304859 1867 - pseudogene predicted gene 13130
Gm13128 4 144330249 to 144333465 3216 + protein coding gene predicted gene 13128
Gm13122 4 144345597 to 144346049 452 - pseudogene predicted gene 13122
Gm13119 4 144357964 to 144364419 6455 + protein coding gene predicted gene 13119
Pramef20 4 144372760 to 144377933 5173 - protein coding gene PRAME family member 20
Pramef12 4 144391674 to 144408464 16790 - protein coding gene PRAME family member 12
Tssr44454 4 144403621 to 144403640 19 - TSS region transcription start site region 44454
Tssr40137 4 144403745 to 144403750 5 + TSS region transcription start site region 40137
Pramef12os 4 144404868 to 144406301 1433 + antisense lncRNA gene PRAME family member 12, opposite strand
Tssr44455 4 144408397 to 144408440 43 - TSS region transcription start site region 44455
1700012P22Rik 4 144418189 to 144438772 20583 - protein coding gene RIKEN cDNA 1700012P22 gene
D4Mit259 4 144435695 to 144435838 143 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 259
Tssr44456 4 144438714 to 144438717 3 - TSS region transcription start site region 44456
Tssr44457 4 144438762 to 144438763 1 - TSS region transcription start site region 44457
Tssr44458 4 144438766 to 144438807 41 - TSS region transcription start site region 44458
D4Mit160 4 144450107 to 144450302 195 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 160
Gm9944 4 144453009 to 144453317 308 - protein coding gene predicted gene 9944
Aadacl3 4 144453771 to 144463756 9985 - protein coding gene arylacetamide deacetylase like 3
Tssr44459 4 144463776 to 144463788 12 - TSS region transcription start site region 44459
Gm13118 4 144498403 to 144498948 545 - pseudogene predicted gene 13118
Tssr40138 4 144519814 to 144519835 21 + TSS region transcription start site region 40138
9430007A20Rik 4 144519822 to 144529353 9531 + protein coding gene RIKEN cDNA 9430007A20 gene
Tssr40139 4 144520223 to 144520233 10 + TSS region transcription start site region 40139
Tssr40140 4 144522229 to 144522247 18 + TSS region transcription start site region 40140
Tssr40141 4 144523630 to 144523654 24 + TSS region transcription start site region 40141
Gm13121 4 144526414 to 144527042 628 - pseudogene predicted gene 13121
Tssr40142 4 144529225 to 144529232 7 + TSS region transcription start site region 40142
Tssr40143 4 144529261 to 144529268 7 + TSS region transcription start site region 40143
Tssr40144 4 144529408 to 144529423 15 + TSS region transcription start site region 40144
Tssr40145 4 144529515 to 144529521 6 + TSS region transcription start site region 40145
Tssr40146 4 144529537 to 144529563 26 + TSS region transcription start site region 40146
Gm13126 4 144545506 to 144548568 3062 - pseudogene predicted gene 13126
Gm13124 4 144555000 to 144565134 10134 - protein coding gene predicted gene 13124
Tssr44460 4 144565193 to 144565201 8 - TSS region transcription start site region 44460
Tssr44461 4 144565267 to 144565274 7 - TSS region transcription start site region 44461
Gm13127 4 144587244 to 144588632 1388 + pseudogene predicted gene 13127
Cpgi15263 4 144588126 to 144588557 431 CpG island CpG island 15263
Tssr40147 4 144613640 to 144613653 13 + TSS region transcription start site region 40147
Tssr40148 4 144613667 to 144613683 16 + TSS region transcription start site region 40148
Tssr40149 4 144613697 to 144613704 7 + TSS region transcription start site region 40149
Aadacl4 4 144613707 to 144623398 9691 + protein coding gene arylacetamide deacetylase like 4
Gm436 4 144669937 to 144686368 16431 - protein coding gene predicted gene 436
Tssr44462 4 144686409 to 144686422 13 - TSS region transcription start site region 44462
Gm13178 4 144703191 to 144721404 18213 - protein coding gene predicted gene 13178
Tssr44463 4 144721431 to 144721439 8 - TSS region transcription start site region 44463
Tssr44464 4 144721453 to 144721467 14 - TSS region transcription start site region 44464
Tssr44465 4 144721471 to 144721497 26 - TSS region transcription start site region 44465
Gm25938 4 144765627 to 144765792 165 - snRNA gene predicted gene, 25938
Gm438 4 144777204 to 144786583 9379 - protein coding gene predicted gene 438
Tssr44466 4 144786551 to 144786566 15 - TSS region transcription start site region 44466
Prdx2-ps2 4 144791837 to 144792660 823 + pseudogene peroxiredoxin 2, pseudogene 2
Gm46890 4 144811271 to 144812028 757 - pseudogene predicted gene, 46890
Gm46876 4 144855381 to 144898676 43295 - lncRNA gene predicted gene, 46876
Tssr40150 4 144891420 to 144891433 13 + TSS region transcription start site region 40150
Tssr40151 4 144891436 to 144891447 11 + TSS region transcription start site region 40151
Cpgi15264 4 144892071 to 144892881 810 CpG island CpG island 15264
Tssr44467 4 144892296 to 144892363 67 - TSS region transcription start site region 44467
Tssr44468 4 144892477 to 144892485 8 - TSS region transcription start site region 44468
Tssr40152 4 144892541 to 144892591 50 + TSS region transcription start site region 40152
Dhrs3 4 144892608 to 144927645 35037 + protein coding gene dehydrogenase/reductase (SDR family) member 3
Tssr40153 4 144892674 to 144892683 9 + TSS region transcription start site region 40153
Tssr40154 4 144892708 to 144892711 3 + TSS region transcription start site region 40154
Tssr40155 4 144892750 to 144892782 32 + TSS region transcription start site region 40155
Tssr40156 4 144892783 to 144892803 20 + TSS region transcription start site region 40156
Tssr40157 4 144892813 to 144892835 22 + TSS region transcription start site region 40157
Tssr40158 4 144892843 to 144892870 27 + TSS region transcription start site region 40158
Tssr40159 4 144892891 to 144892907 16 + TSS region transcription start site region 40159
Tssr40160 4 144893012 to 144893042 30 + TSS region transcription start site region 40160
Tssr40161 4 144893089 to 144893103 14 + TSS region transcription start site region 40161
Tssr40162 4 144893127 to 144893151 24 + TSS region transcription start site region 40162
Tssr40163 4 144893182 to 144893193 11 + TSS region transcription start site region 40163
Tssr40164 4 144893211 to 144893224 13 + TSS region transcription start site region 40164
Tssr40165 4 144893305 to 144893320 15 + TSS region transcription start site region 40165
Tssr40166 4 144893416 to 144893426 10 + TSS region transcription start site region 40166
Cpgi15265 4 144893465 to 144894147 682 CpG island CpG island 15265
Tssr40167 4 144893482 to 144893512 30 + TSS region transcription start site region 40167
Tssr40168 4 144893619 to 144893646 27 + TSS region transcription start site region 40168
Tssr40169 4 144893655 to 144893666 11 + TSS region transcription start site region 40169
Tssr40170 4 144893862 to 144893875 13 + TSS region transcription start site region 40170
Tssr40171 4 144895187 to 144895224 37 + TSS region transcription start site region 40171
Tssr1368 4 144895408 to 144895421 13 + TSS region transcription start site region 1368
Cpgi15266 4 144895543 to 144896243 700 CpG island CpG island 15266
Tssr40172 4 144895564 to 144895596 32 + TSS region transcription start site region 40172
Tssr40173 4 144898702 to 144898707 5 + TSS region transcription start site region 40173
Tssr44469 4 144903970 to 144903977 7 - TSS region transcription start site region 44469
Tssr40174 4 144904311 to 144904313 2 + TSS region transcription start site region 40174
Tssr40175 4 144906985 to 144907115 130 + TSS region transcription start site region 40175
Tssr40176 4 144912685 to 144912702 17 + TSS region transcription start site region 40176
Tssr40177 4 144919991 to 144920008 17 + TSS region transcription start site region 40177
Tssr40178 4 144920787 to 144920809 22 + TSS region transcription start site region 40178
Tssr40179 4 144921460 to 144921467 7 + TSS region transcription start site region 40179
Tssr40180 4 144922183 to 144922194 11 + TSS region transcription start site region 40180
Tssr40181 4 144923978 to 144923993 15 + TSS region transcription start site region 40181
Tssr40182 4 144927172 to 144927189 17 + TSS region transcription start site region 40182
Tssr40183 4 144927394 to 144927410 16 + TSS region transcription start site region 40183
Tssr40184 4 144927413 to 144927448 35 + TSS region transcription start site region 40184
Gm42344 4 144938570 to 144954151 15581 - lncRNA gene predicted gene, 42344
Gm38074 4 144957155 to 144958848 1693 - unclassified gene predicted gene, 38074
Gm36317 4 144963353 to 144965593 2240 + lncRNA gene predicted gene, 36317
Vps13d 4 144972622 to 145195005 222383 - protein coding gene vacuolar protein sorting 13D
Lfibq20 4 144973265 to 148822969 3849704 QTL liver fibrosis QTL 20
Tssr40185 4 144977441 to 144977453 12 + TSS region transcription start site region 40185
Tssr44470 4 144980792 to 144980827 35 - TSS region transcription start site region 44470
Tssr44471 4 144981265 to 144981279 14 - TSS region transcription start site region 44471
Tssr40186 4 144981396 to 144981433 37 + TSS region transcription start site region 40186
Tssr44472 4 144983454 to 144983472 18 - TSS region transcription start site region 44472
D4Ertd151e 4 144983606 to 144983805 199 DNA segment DNA segment, Chr 4, ERATO Doi 151, expressed
Tssr44473 4 144998327 to 144998343 16 - TSS region transcription start site region 44473
Tssr40187 4 145000436 to 145000442 6 + TSS region transcription start site region 40187
Tssr40188 4 145017948 to 145017966 18 + TSS region transcription start site region 40188
Tssr44474 4 145019509 to 145019516 7 - TSS region transcription start site region 44474
Tssr40189 4 145023032 to 145023047 15 + TSS region transcription start site region 40189
Tssr44475 4 145024742 to 145024746 4 - TSS region transcription start site region 44475
Tssr40190 4 145026856 to 145026899 43 + TSS region transcription start site region 40190
Tssr40191 4 145045887 to 145045894 7 + TSS region transcription start site region 40191
Tssr44476 4 145054247 to 145054259 12 - TSS region transcription start site region 44476
D4Mit232 4 145057656 to 145057773 117 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 232
Gct5 4 145057656 to 145057773 117 QTL granulosa cell tumorigenesis 5
Gct1 4 145057656 to 145057773 117 QTL granulosa cell tumorigenesis 1
D4Mit232.1 4 145057742 to 145057863 121 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 232.1
Tssr44477 4 145067220 to 145067229 9 - TSS region transcription start site region 44477
Tssr44478 4 145096826 to 145096837 11 - TSS region transcription start site region 44478
Tssr44479 4 145103770 to 145103784 14 - TSS region transcription start site region 44479
Tssr44480 4 145122330 to 145122334 4 - TSS region transcription start site region 44480
Gm42343 4 145145046 to 145150967 5921 + lncRNA gene predicted gene, 42343
Cpgi15267 4 145194324 to 145195341 1017 CpG island CpG island 15267
Tssr44481 4 145194953 to 145194964 11 - TSS region transcription start site region 44481
Tssr44482 4 145194967 to 145194993 26 - TSS region transcription start site region 44482
Tssr44483 4 145194999 to 145195044 45 - TSS region transcription start site region 44483
Tssr40192 4 145209919 to 145209930 11 + TSS region transcription start site region 40192
Tssr40193 4 145209971 to 145209980 9 + TSS region transcription start site region 40193
Tssr44484 4 145212773 to 145212785 12 - TSS region transcription start site region 44484
Tssr44485 4 145212827 to 145212851 24 - TSS region transcription start site region 44485
Tnfrsf1b 4 145213463 to 145246870 33407 - protein coding gene tumor necrosis factor receptor superfamily, member 1b
Tssr44486 4 145213656 to 145213673 17 - TSS region transcription start site region 44486
Tssr44487 4 145213710 to 145213728 18 - TSS region transcription start site region 44487
Tssr44488 4 145213813 to 145213845 32 - TSS region transcription start site region 44488
Tssr44489 4 145213905 to 145213921 16 - TSS region transcription start site region 44489
Tssr40194 4 145213929 to 145213970 41 + TSS region transcription start site region 40194
Tssr44490 4 145214198 to 145214217 19 - TSS region transcription start site region 44490
Tssr40195 4 145214281 to 145214299 18 + TSS region transcription start site region 40195
Tssr44491 4 145214365 to 145214395 30 - TSS region transcription start site region 44491
Tssr44492 4 145214590 to 145214611 21 - TSS region transcription start site region 44492
Tssr44493 4 145214751 to 145214764 13 - TSS region transcription start site region 44493
Tssr44494 4 145214985 to 145215008 23 - TSS region transcription start site region 44494
Tssr44495 4 145215046 to 145215062 16 - TSS region transcription start site region 44495
Tssr44496 4 145215115 to 145215133 18 - TSS region transcription start site region 44496
Tssr44497 4 145215238 to 145215251 13 - TSS region transcription start site region 44497
Tssr44498 4 145215363 to 145215395 32 - TSS region transcription start site region 44498
Tssr44499 4 145215406 to 145215440 34 - TSS region transcription start site region 44499
Tssr44500 4 145215494 to 145215526 32 - TSS region transcription start site region 44500
Tssr44501 4 145215554 to 145215569 15 - TSS region transcription start site region 44501
Tssr44502 4 145215650 to 145215667 17 - TSS region transcription start site region 44502
Tssr44503 4 145215766 to 145215779 13 - TSS region transcription start site region 44503
Tssr44504 4 145215832 to 145215845 13 - TSS region transcription start site region 44504
Tssr40196 4 145220639 to 145220640 1 + TSS region transcription start site region 40196
Tssr40197 4 145224341 to 145224406 65 + TSS region transcription start site region 40197
Tssr44505 4 145224386 to 145224497 111 - TSS region transcription start site region 44505
Tssr40198 4 145224847 to 145224874 27 + TSS region transcription start site region 40198
Tssr44506 4 145224850 to 145224866 16 - TSS region transcription start site region 44506
D4Mit233 4 145224944 to 145225118 174 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 233
Tssr44507 4 145225452 to 145225492 40 - TSS region transcription start site region 44507
Tssr44508 4 145225882 to 145225888 6 - TSS region transcription start site region 44508