Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:141840998-142501038

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92 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Shali2 4 124161300 to 141845481 17684181 QTL survival time to hyperoxic acute lung injury 2
Ctrc 4 141838239 to 141846359 8120 - protein coding gene chymotrypsin C (caldecrin)
Tssr40117 4 141844300 to 141844310 10 + TSS region transcription start site region 40117
Ctrcos 4 141844321 to 141846990 2669 + antisense lncRNA gene chymotrypsin C (caldecrin), opposite strand
Tssr44391 4 141844657 to 141844685 28 - TSS region transcription start site region 44391
D4Mit65 4 141845361 to 141845481 120 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 65
Tssr44392 4 141846277 to 141846293 16 - TSS region transcription start site region 44392
Tssr44393 4 141846361 to 141846374 13 - TSS region transcription start site region 44393
Gm35034 4 141848343 to 141858453 10110 + lncRNA gene predicted gene, 35034
Cpgi15247 4 141856532 to 141856767 235 CpG island CpG island 15247
Efhd2 4 141858142 to 141874920 16778 - protein coding gene EF hand domain containing 2
Tssr44394 4 141859234 to 141859246 12 - TSS region transcription start site region 44394
Tssr40118 4 141859348 to 141859376 28 + TSS region transcription start site region 40118
Tssr44395 4 141859541 to 141859583 42 - TSS region transcription start site region 44395
Tssr44396 4 141859617 to 141859705 88 - TSS region transcription start site region 44396
Tssr44397 4 141859716 to 141859742 26 - TSS region transcription start site region 44397
Tssr44398 4 141860574 to 141860586 12 - TSS region transcription start site region 44398
Tssr44399 4 141860624 to 141860653 29 - TSS region transcription start site region 44399
Tssr44400 4 141860675 to 141860689 14 - TSS region transcription start site region 44400
Tssr44401 4 141861992 to 141862031 39 - TSS region transcription start site region 44401
Tssr44402 4 141864428 to 141864434 6 - TSS region transcription start site region 44402
Tssr44403 4 141871082 to 141871118 36 - TSS region transcription start site region 44403
Tssr40119 4 141873209 to 141873237 28 + TSS region transcription start site region 40119
Cpgi15248 4 141874264 to 141875444 1180 CpG island CpG island 15248
Tssr44404 4 141874879 to 141874953 74 - TSS region transcription start site region 44404
Tssr44405 4 141875251 to 141875300 49 - TSS region transcription start site region 44405
Tssr44406 4 141875311 to 141875322 11 - TSS region transcription start site region 44406
Gm29367 4 141875707 to 141877033 1326 + lincRNA gene predicted gene 29367
Gm46874 4 141879684 to 141885620 5936 - lncRNA gene predicted gene, 46874
Fhad1os2 4 141885654 to 141897282 11628 + antisense lncRNA gene forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 2
Fhad1 4 141890438 to 142015082 124644 - protein coding gene forkhead-associated (FHA) phosphopeptide binding domain 1
Adip12 4 141893970 to 141894076 106 QTL adiposity 12
D4Mit312 4 141893970 to 141894076 106 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 312
Pltiq1 4 141893970 to 141894076 106 QTL phospholipid transfer protein inducibility QTL 1
Tafat 4 141893970 to 141894076 106 QTL TallyHo associated mesenteric fat pad weight
Tssr40120 4 141901990 to 141901993 3 + TSS region transcription start site region 40120
Gm42338 4 141909876 to 141915922 6046 + lncRNA gene predicted gene, 42338
Gm35295 4 141920920 to 141932783 11863 + lncRNA gene predicted gene, 35295
Tssr44407 4 141932906 to 141932932 26 - TSS region transcription start site region 44407
Tssr44408 4 141933053 to 141933065 12 - TSS region transcription start site region 44408
Tssr44409 4 141933080 to 141933095 15 - TSS region transcription start site region 44409
Tssr44410 4 141952111 to 141952143 32 - TSS region transcription start site region 44410
Tssr44411 4 141952238 to 141952262 24 - TSS region transcription start site region 44411
Tssr44412 4 141952932 to 141952946 14 - TSS region transcription start site region 44412
Cpgi15249 4 141963228 to 141963447 219 CpG island CpG island 15249
Gm13059 4 141976779 to 141977343 564 + pseudogene predicted gene 13059
Fhad1os1 4 141982992 to 141986797 3805 + antisense lncRNA gene forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1
D4Mit252 4 142005828 to 142005934 106 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 252
Cpgi15250 4 142014751 to 142015379 628 CpG island CpG island 15250
Tssr44413 4 142015056 to 142015069 13 - TSS region transcription start site region 44413
Tssr44414 4 142015076 to 142015114 38 - TSS region transcription start site region 44414
4930455G09Rik 4 142017898 to 142028995 11097 + antisense lncRNA gene RIKEN cDNA 4930455G09 gene
Tssr40121 4 142017979 to 142017990 11 + TSS region transcription start site region 40121
Tssr40122 4 142018007 to 142018034 27 + TSS region transcription start site region 40122
Tmem51 4 142030992 to 142084304 53312 - protein coding gene transmembrane protein 51
Cpgi15251 4 142031361 to 142032121 760 CpG island CpG island 15251
Gm13053 4 142042912 to 142048578 5666 - sense intronic lncRNA gene predicted gene 13053
Tssr44415 4 142048458 to 142048468 10 - TSS region transcription start site region 44415
Tssr44416 4 142048531 to 142048540 9 - TSS region transcription start site region 44416
Tssr44417 4 142048569 to 142048584 15 - TSS region transcription start site region 44417
Tssr44418 4 142049005 to 142049012 7 - TSS region transcription start site region 44418
D4Mit128 4 142058983 to 142059132 149 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 128
D4Mit311 4 142062391 to 142062494 103 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 311
Tssr40123 4 142078278 to 142078290 12 + TSS region transcription start site region 40123
Cpgi15252 4 142083758 to 142084810 1052 CpG island CpG island 15252
Tssr44419 4 142084197 to 142084219 22 - TSS region transcription start site region 44419
Tssr44420 4 142084221 to 142084262 41 - TSS region transcription start site region 44420
Tmem51os1 4 142084298 to 142088101 3803 + antisense lncRNA gene Tmem51 opposite strand 1
Tssr44421 4 142084527 to 142084563 36 - TSS region transcription start site region 44421
Tssr44422 4 142084665 to 142084683 18 - TSS region transcription start site region 44422
Tssr40124 4 142089141 to 142089153 12 + TSS region transcription start site region 40124
Kazn 4 142102390 to 142239401 137011 - protein coding gene kazrin, periplakin interacting protein
Gm35581 4 142126678 to 142128190 1512 + lncRNA gene predicted gene, 35581
Tssr40125 4 142164616 to 142164656 40 + TSS region transcription start site region 40125
Tssr44423 4 142170998 to 142171038 40 - TSS region transcription start site region 44423
Gm13062 4 142180602 to 142184139 3537 + antisense lncRNA gene predicted gene 13062
Tssr44424 4 142192952 to 142192956 4 - TSS region transcription start site region 44424
Tssr40126 4 142238230 to 142238241 11 + TSS region transcription start site region 40126
Cpgi15253 4 142238336 to 142239736 1400 CpG island CpG island 15253
Gm35531 4 142239350 to 142242570 3220 + lncRNA gene predicted gene, 35531
Tssr44425 4 142239356 to 142239418 62 - TSS region transcription start site region 44425
Tssr44426 4 142239440 to 142239451 11 - TSS region transcription start site region 44426
1700085G17Rik 4 142255660 to 142256075 415 unclassified gene RIKEN cDNA 1700085G17 gene
Tssr40127 4 142307708 to 142307742 34 + TSS region transcription start site region 40127
Gm13052 4 142307765 to 142346475 38710 - lincRNA gene predicted gene 13052
Gm46875 4 142348717 to 142361007 12290 + lncRNA gene predicted gene, 46875
Gm42339 4 142407124 to 142414307 7183 - lncRNA gene predicted gene, 42339
C030029H13Rik 4 142421677 to 142422952 1275 unclassified gene Riken cDNA C030029H13 gene
Tssr44427 4 142422175 to 142422177 2 - TSS region transcription start site region 44427
Tssr44428 4 142453532 to 142453536 4 - TSS region transcription start site region 44428
Tssr44429 4 142460398 to 142460412 14 - TSS region transcription start site region 44429
Gm35752 4 142495588 to 142499568 3980 + lncRNA gene predicted gene, 35752