Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:141735707-142017033

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113 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Shali2 4 124161300 to 141845481 17684181 QTL survival time to hyperoxic acute lung injury 2
Gm34863 4 141729503 to 141743817 14314 + lncRNA gene predicted gene, 34863
Agmat 4 141746675 to 141759263 12588 + protein coding gene agmatine ureohydrolase (agmatinase)
Tssr40094 4 141746730 to 141746759 29 + TSS region transcription start site region 40094
Tssr40095 4 141746769 to 141746787 18 + TSS region transcription start site region 40095
Tssr40096 4 141746792 to 141746814 22 + TSS region transcription start site region 40096
Cpgi15243 4 141746870 to 141747160 290 CpG island CpG island 15243
Tssr40097 4 141750293 to 141750294 1 + TSS region transcription start site region 40097
Tssr40098 4 141757347 to 141757395 48 + TSS region transcription start site region 40098
Dnajc16 4 141761998 to 141790644 28646 - protein coding gene DnaJ heat shock protein family (Hsp40) member C16
Cpgi15244 4 141790063 to 141791116 1053 CpG island CpG island 15244
Tssr44363 4 141790629 to 141790698 69 - TSS region transcription start site region 44363
Tssr44364 4 141790899 to 141790941 42 - TSS region transcription start site region 44364
Cpgi15245 4 141793076 to 141794180 1104 CpG island CpG island 15245
Tssr44365 4 141793183 to 141793188 5 - TSS region transcription start site region 44365
Casp9 4 141793612 to 141815976 22364 + protein coding gene caspase 9
Tssr40099 4 141793705 to 141793735 30 + TSS region transcription start site region 40099
Tssr40100 4 141793789 to 141793809 20 + TSS region transcription start site region 40100
Tssr40101 4 141793818 to 141793848 30 + TSS region transcription start site region 40101
Tssr40102 4 141814957 to 141814971 14 + TSS region transcription start site region 40102
Cela2a 4 141814963 to 141826003 11040 - protein coding gene chymotrypsin-like elastase family, member 2A
Tssr40103 4 141814982 to 141814987 5 + TSS region transcription start site region 40103
Tssr44366 4 141814993 to 141815063 70 - TSS region transcription start site region 44366
Tssr40104 4 141814995 to 141815033 38 + TSS region transcription start site region 40104
Tssr44367 4 141815789 to 141815791 2 - TSS region transcription start site region 44367
Tssr44368 4 141816734 to 141816738 4 - TSS region transcription start site region 44368
Tssr40105 4 141817860 to 141817899 39 + TSS region transcription start site region 40105
Tssr44369 4 141817885 to 141817897 12 - TSS region transcription start site region 44369
Tssr44370 4 141817899 to 141817937 38 - TSS region transcription start site region 44370
Tssr40106 4 141817903 to 141817930 27 + TSS region transcription start site region 40106
Tssr44371 4 141817947 to 141817968 21 - TSS region transcription start site region 44371
Tssr40107 4 141817974 to 141817982 8 + TSS region transcription start site region 40107
Tssr44372 4 141817975 to 141817999 24 - TSS region transcription start site region 44372
Tssr44373 4 141818280 to 141818286 6 - TSS region transcription start site region 44373
Cpgi15246 4 141818902 to 141819077 175 CpG island CpG island 15246
Tssr44374 4 141819019 to 141819132 113 - TSS region transcription start site region 44374
Tssr40108 4 141819024 to 141819044 20 + TSS region transcription start site region 40108
Tssr40109 4 141819050 to 141819079 29 + TSS region transcription start site region 40109
Tssr40110 4 141819085 to 141819102 17 + TSS region transcription start site region 40110
Tssr44375 4 141819327 to 141819365 38 - TSS region transcription start site region 44375
Tssr44376 4 141819366 to 141819383 17 - TSS region transcription start site region 44376
D4Mit32 4 141819851 to 141819999 148 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 32
Tssr44377 4 141819984 to 141819992 8 - TSS region transcription start site region 44377
Tssr44378 4 141820103 to 141820113 10 - TSS region transcription start site region 44378
Tssr40111 4 141821325 to 141821350 25 + TSS region transcription start site region 40111
Tssr44379 4 141821352 to 141821362 10 - TSS region transcription start site region 44379
Tssr40112 4 141821353 to 141821366 13 + TSS region transcription start site region 40112
Tssr44380 4 141821364 to 141821466 102 - TSS region transcription start site region 44380
Tssr40113 4 141821382 to 141821420 38 + TSS region transcription start site region 40113
Tssr40114 4 141821704 to 141821723 19 + TSS region transcription start site region 40114
Tssr44381 4 141821720 to 141821730 10 - TSS region transcription start site region 44381
Tssr40115 4 141821738 to 141821751 13 + TSS region transcription start site region 40115
Tssr44382 4 141821739 to 141821786 47 - TSS region transcription start site region 44382
Tssr40116 4 141821778 to 141821804 26 + TSS region transcription start site region 40116
Tssr44383 4 141821790 to 141821840 50 - TSS region transcription start site region 44383
Tssr44384 4 141822257 to 141822262 5 - TSS region transcription start site region 44384
Tssr44385 4 141822263 to 141822266 3 - TSS region transcription start site region 44385
Tssr44386 4 141822273 to 141822334 61 - TSS region transcription start site region 44386
Tssr44387 4 141825549 to 141825576 27 - TSS region transcription start site region 44387
Tssr44388 4 141825582 to 141825601 19 - TSS region transcription start site region 44388
Tssr44389 4 141825605 to 141825634 29 - TSS region transcription start site region 44389
Tssr44390 4 141825997 to 141826012 15 - TSS region transcription start site region 44390
Lymph3 4 141826172 to 141826172 0 QTL lymphocyte differential 3
Ctrc 4 141838239 to 141846359 8120 - protein coding gene chymotrypsin C (caldecrin)
Tssr40117 4 141844300 to 141844310 10 + TSS region transcription start site region 40117
Ctrcos 4 141844321 to 141846990 2669 + antisense lncRNA gene chymotrypsin C (caldecrin), opposite strand
Tssr44391 4 141844657 to 141844685 28 - TSS region transcription start site region 44391
D4Mit65 4 141845361 to 141845481 120 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 65
Tssr44392 4 141846277 to 141846293 16 - TSS region transcription start site region 44392
Tssr44393 4 141846361 to 141846374 13 - TSS region transcription start site region 44393
Gm35034 4 141848343 to 141858453 10110 + lncRNA gene predicted gene, 35034
Cpgi15247 4 141856532 to 141856767 235 CpG island CpG island 15247
Efhd2 4 141858142 to 141874920 16778 - protein coding gene EF hand domain containing 2
Tssr44394 4 141859234 to 141859246 12 - TSS region transcription start site region 44394
Tssr40118 4 141859348 to 141859376 28 + TSS region transcription start site region 40118
Tssr44395 4 141859541 to 141859583 42 - TSS region transcription start site region 44395
Tssr44396 4 141859617 to 141859705 88 - TSS region transcription start site region 44396
Tssr44397 4 141859716 to 141859742 26 - TSS region transcription start site region 44397
Tssr44398 4 141860574 to 141860586 12 - TSS region transcription start site region 44398
Tssr44399 4 141860624 to 141860653 29 - TSS region transcription start site region 44399
Tssr44400 4 141860675 to 141860689 14 - TSS region transcription start site region 44400
Tssr44401 4 141861992 to 141862031 39 - TSS region transcription start site region 44401
Tssr44402 4 141864428 to 141864434 6 - TSS region transcription start site region 44402
Tssr44403 4 141871082 to 141871118 36 - TSS region transcription start site region 44403
Tssr40119 4 141873209 to 141873237 28 + TSS region transcription start site region 40119
Cpgi15248 4 141874264 to 141875444 1180 CpG island CpG island 15248
Tssr44404 4 141874879 to 141874953 74 - TSS region transcription start site region 44404
Tssr44405 4 141875251 to 141875300 49 - TSS region transcription start site region 44405
Tssr44406 4 141875311 to 141875322 11 - TSS region transcription start site region 44406
Gm29367 4 141875707 to 141877033 1326 + lincRNA gene predicted gene 29367
Gm46874 4 141879684 to 141885620 5936 - lncRNA gene predicted gene, 46874
Fhad1os2 4 141885654 to 141897282 11628 + antisense lncRNA gene forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 2
Fhad1 4 141890438 to 142015082 124644 - protein coding gene forkhead-associated (FHA) phosphopeptide binding domain 1
Pltiq1 4 141893970 to 141894076 106 QTL phospholipid transfer protein inducibility QTL 1
D4Mit312 4 141893970 to 141894076 106 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 312
Adip12 4 141893970 to 141894076 106 QTL adiposity 12
Tafat 4 141893970 to 141894076 106 QTL TallyHo associated mesenteric fat pad weight
Tssr40120 4 141901990 to 141901993 3 + TSS region transcription start site region 40120
Gm42338 4 141909876 to 141915922 6046 + lncRNA gene predicted gene, 42338
Gm35295 4 141920920 to 141932783 11863 + lncRNA gene predicted gene, 35295
Tssr44407 4 141932906 to 141932932 26 - TSS region transcription start site region 44407
Tssr44408 4 141933053 to 141933065 12 - TSS region transcription start site region 44408
Tssr44409 4 141933080 to 141933095 15 - TSS region transcription start site region 44409
Tssr44410 4 141952111 to 141952143 32 - TSS region transcription start site region 44410
Tssr44411 4 141952238 to 141952262 24 - TSS region transcription start site region 44411
Tssr44412 4 141952932 to 141952946 14 - TSS region transcription start site region 44412
Cpgi15249 4 141963228 to 141963447 219 CpG island CpG island 15249
Gm13059 4 141976779 to 141977343 564 + pseudogene predicted gene 13059
Fhad1os1 4 141982992 to 141986797 3805 + antisense lncRNA gene forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1
D4Mit252 4 142005828 to 142005934 106 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 252
Cpgi15250 4 142014751 to 142015379 628 CpG island CpG island 15250
Tssr44413 4 142015056 to 142015069 13 - TSS region transcription start site region 44413
Tssr44414 4 142015076 to 142015114 38 - TSS region transcription start site region 44414