Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:141434584-141794593

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113 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pwbwq9 4 105978113 to 141706527 35728414 QTL post-weaning body weight QTL 9
Pwbwq4 4 105978113 to 141706527 35728414 QTL pre-weaning body weight QTL 4
Pwgrq4 4 105978113 to 141706527 35728414 QTL pre-weaning growth rate QTL 4
Pwbwq8 4 105978113 to 141706527 35728414 QTL post-weaning body weight QTL 8
Srarp 4 141432672 to 141436105 3433 - protein coding gene steroid receptor associated and regulated protein
Gm42337 4 141443986 to 141444658 672 - lncRNA gene predicted gene, 42337
Cpgi15230 4 141444481 to 141445704 1223 CpG island CpG island 15230
Zbtb17 4 141444654 to 141467930 23276 + protein coding gene zinc finger and BTB domain containing 17
Tssr40079 4 141444657 to 141444714 57 + TSS region transcription start site region 40079
Tssr44320 4 141445429 to 141445440 11 - TSS region transcription start site region 44320
Spen 4 141467890 to 141538597 70707 - protein coding gene spen family transcription repressor
Cpgi15231 4 141477458 to 141477886 428 CpG island CpG island 15231
Tssr1361 4 141477517 to 141477524 7 - TSS region transcription start site region 1361
Cpgi15232 4 141478332 to 141479141 809 CpG island CpG island 15232
Gm4123 4 141535513 to 141537422 1909 + unclassified gene predicted gene 4123
Cpgi15233 4 141536165 to 141537207 1042 CpG island CpG island 15233
Cpgi15234 4 141537419 to 141539085 1666 CpG island CpG island 15234
Tssr44321 4 141538434 to 141538525 91 - TSS region transcription start site region 44321
Tssr44322 4 141538562 to 141538626 64 - TSS region transcription start site region 44322
B830004H01Rik 4 141539208 to 141543604 4396 unclassified non-coding RNA gene RIKEN cDNA B830004H01 gene
Cpgi15235 4 141545097 to 141547224 2127 CpG island CpG island 15235
Tssr40080 4 141545213 to 141545230 17 + TSS region transcription start site region 40080
Tssr44323 4 141545864 to 141545897 33 - TSS region transcription start site region 44323
Tssr40081 4 141546141 to 141546202 61 + TSS region transcription start site region 40081
B330016D10Rik 4 141546189 to 141547892 1703 + unclassified non-coding RNA gene RIKEN cDNA B330016D10 gene
Tssr1362 4 141546765 to 141546799 34 + TSS region transcription start site region 1362
Tssr40082 4 141546800 to 141546829 29 + TSS region transcription start site region 40082
Tssr44324 4 141547039 to 141547057 18 - TSS region transcription start site region 44324
Tssr44325 4 141559419 to 141559427 8 - TSS region transcription start site region 44325
Cpgi15236 4 141559532 to 141560025 493 CpG island CpG island 15236
Tssr44326 4 141566337 to 141566344 7 - TSS region transcription start site region 44326
Tssr44327 4 141566353 to 141566381 28 - TSS region transcription start site region 44327
Tssr44328 4 141566384 to 141566393 9 - TSS region transcription start site region 44328
Tssr40083 4 141566483 to 141566500 17 + TSS region transcription start site region 40083
Tssr44329 4 141571482 to 141571489 7 - TSS region transcription start site region 44329
Tssr44330 4 141571517 to 141571544 27 - TSS region transcription start site region 44330
Tssr44331 4 141571611 to 141571634 23 - TSS region transcription start site region 44331
Tssr40084 4 141572261 to 141572272 11 + TSS region transcription start site region 40084
Tssr40085 4 141573265 to 141573288 23 + TSS region transcription start site region 40085
Tssr40086 4 141573481 to 141573526 45 + TSS region transcription start site region 40086
Fblim1 4 141576062 to 141606052 29990 - protein coding gene filamin binding LIM protein 1
Tssr44332 4 141576805 to 141576834 29 - TSS region transcription start site region 44332
Tssr44333 4 141581389 to 141581395 6 - TSS region transcription start site region 44333
Tssr44334 4 141586803 to 141586806 3 - TSS region transcription start site region 44334
Tssr44335 4 141595935 to 141595961 26 - TSS region transcription start site region 44335
D4Mit284 4 141596121 to 141596243 122 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 284
Tssr44336 4 141598209 to 141598229 20 - TSS region transcription start site region 44336
Tssr44337 4 141598230 to 141598245 15 - TSS region transcription start site region 44337
Cpgi15237 4 141599322 to 141600201 879 CpG island CpG island 15237
Tssr44338 4 141599868 to 141599906 38 - TSS region transcription start site region 44338
Tssr44339 4 141599942 to 141599953 11 - TSS region transcription start site region 44339
Tssr44340 4 141600872 to 141600887 15 - TSS region transcription start site region 44340
Tssr44341 4 141601612 to 141601663 51 - TSS region transcription start site region 44341
Tssr44342 4 141601668 to 141601675 7 - TSS region transcription start site region 44342
Tssr44343 4 141601676 to 141601738 62 - TSS region transcription start site region 44343
Tssr44344 4 141605976 to 141606008 32 - TSS region transcription start site region 44344
Tssr44345 4 141606011 to 141606058 47 - TSS region transcription start site region 44345
Tssr44346 4 141606103 to 141606112 9 - TSS region transcription start site region 44346
Tmem82 4 141614229 to 141618633 4404 - protein coding gene transmembrane protein 82
Tssr40087 4 141614313 to 141614315 2 + TSS region transcription start site region 40087
Tssr40088 4 141614340 to 141614389 49 + TSS region transcription start site region 40088
AI507597 4 141614370 to 141615604 1234 + antisense lncRNA gene expressed sequence AI507597
Tssr40089 4 141614584 to 141614593 9 + TSS region transcription start site region 40089
Cpgi15238 4 141617310 to 141618032 722 CpG island CpG island 15238
Tssr44347 4 141617996 to 141618056 60 - TSS region transcription start site region 44347
Slc25a34 4 141618824 to 141623821 4997 - protein coding gene solute carrier family 25, member 34
Tssr1363 4 141623138 to 141623143 5 - TSS region transcription start site region 1363
Tssr40090 4 141623276 to 141623285 9 + TSS region transcription start site region 40090
Tssr44348 4 141623799 to 141623840 41 - TSS region transcription start site region 44348
Plekhm2 4 141625732 to 141664115 38383 - protein coding gene pleckstrin homology domain containing, family M (with RUN domain) member 2
Cpgi15239 4 141628239 to 141628585 346 CpG island CpG island 15239
Tssr44349 4 141642130 to 141642147 17 - TSS region transcription start site region 44349
Tssr44350 4 141642168 to 141642201 33 - TSS region transcription start site region 44350
Tssr44351 4 141642823 to 141642834 11 - TSS region transcription start site region 44351
Tssr44352 4 141644964 to 141644969 5 - TSS region transcription start site region 44352
4930451G21Rik 4 141652123 to 141654919 2796 unclassified gene RIKEN cDNA 4930451G21 gene
Tssr44353 4 141652372 to 141652413 41 - TSS region transcription start site region 44353
Tssr44354 4 141652455 to 141652479 24 - TSS region transcription start site region 44354
Cpgi15240 4 141663184 to 141664580 1396 CpG island CpG island 15240
Tssr44355 4 141663999 to 141664021 22 - TSS region transcription start site region 44355
Tssr44356 4 141664063 to 141664170 107 - TSS region transcription start site region 44356
Tssr40091 4 141664187 to 141664231 44 + TSS region transcription start site region 40091
Tssr40092 4 141664241 to 141664249 8 + TSS region transcription start site region 40092
Tssr44357 4 141679549 to 141679551 2 - TSS region transcription start site region 44357
Ddi2 4 141683563 to 141723419 39856 - protein coding gene DNA-damage inducible protein 2
Rsc1a1 4 141683851 to 141685599 1748 - protein coding gene regulatory solute carrier protein, family 1, member 1
Tssr44358 4 141696043 to 141696047 4 - TSS region transcription start site region 44358
Tssr44359 4 141708402 to 141708414 12 - TSS region transcription start site region 44359
Tssr40093 4 141714044 to 141714049 5 + TSS region transcription start site region 40093
Cpgi15241 4 141722732 to 141723927 1195 CpG island CpG island 15241
Tssr44360 4 141723297 to 141723308 11 - TSS region transcription start site region 44360
Tssr44361 4 141723401 to 141723436 35 - TSS region transcription start site region 44361
Tssr1364 4 141723439 to 141723454 15 - TSS region transcription start site region 1364
Tssr44362 4 141723458 to 141723466 8 - TSS region transcription start site region 44362
Gm34863 4 141729503 to 141743817 14314 + lncRNA gene predicted gene, 34863
Cpgi15242 4 141734916 to 141735267 351 CpG island CpG island 15242
Agmat 4 141746675 to 141759263 12588 + protein coding gene agmatine ureohydrolase (agmatinase)
Tssr40094 4 141746730 to 141746759 29 + TSS region transcription start site region 40094
Tssr40095 4 141746769 to 141746787 18 + TSS region transcription start site region 40095
Tssr40096 4 141746792 to 141746814 22 + TSS region transcription start site region 40096
Cpgi15243 4 141746870 to 141747160 290 CpG island CpG island 15243
Tssr40097 4 141750293 to 141750294 1 + TSS region transcription start site region 40097
Tssr40098 4 141757347 to 141757395 48 + TSS region transcription start site region 40098
Dnajc16 4 141761998 to 141790644 28646 - protein coding gene DnaJ heat shock protein family (Hsp40) member C16
Cpgi15244 4 141790063 to 141791116 1053 CpG island CpG island 15244
Tssr44363 4 141790629 to 141790698 69 - TSS region transcription start site region 44363
Tssr44364 4 141790899 to 141790941 42 - TSS region transcription start site region 44364
Cpgi15245 4 141793076 to 141794180 1104 CpG island CpG island 15245
Tssr44365 4 141793183 to 141793188 5 - TSS region transcription start site region 44365
Casp9 4 141793612 to 141815976 22364 + protein coding gene caspase 9
Tssr40099 4 141793705 to 141793735 30 + TSS region transcription start site region 40099
Tssr40100 4 141793789 to 141793809 20 + TSS region transcription start site region 40100
Tssr40101 4 141793818 to 141793848 30 + TSS region transcription start site region 40101