Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:141416483-141716500

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127 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pwbwq4 4 105978113 to 141706527 35728414 QTL pre-weaning body weight QTL 4
Pwgrq4 4 105978113 to 141706527 35728414 QTL pre-weaning growth rate QTL 4
Pwbwq9 4 105978113 to 141706527 35728414 QTL post-weaning body weight QTL 9
Pwbwq8 4 105978113 to 141706527 35728414 QTL post-weaning body weight QTL 8
Cpgi15226 4 141419478 to 141419678 200 CpG island CpG island 15226
Tssr40052 4 141420227 to 141420237 10 + TSS region transcription start site region 40052
Tssr40053 4 141420757 to 141420798 41 + TSS region transcription start site region 40053
Hspb7 4 141420779 to 141425310 4531 + protein coding gene heat shock protein family, member 7 (cardiovascular)
Cpgi15227 4 141421634 to 141421840 206 CpG island CpG island 15227
Tssr40054 4 141421659 to 141421676 17 + TSS region transcription start site region 40054
Tssr40055 4 141421687 to 141421689 2 + TSS region transcription start site region 40055
Tssr40056 4 141421694 to 141421710 16 + TSS region transcription start site region 40056
Tssr40057 4 141421750 to 141421771 21 + TSS region transcription start site region 40057
Tssr40058 4 141421785 to 141421798 13 + TSS region transcription start site region 40058
Tssr40059 4 141421808 to 141421822 14 + TSS region transcription start site region 40059
Tssr40060 4 141421841 to 141421882 41 + TSS region transcription start site region 40060
Tssr40061 4 141421884 to 141421892 8 + TSS region transcription start site region 40061
Tssr40062 4 141422508 to 141422523 15 + TSS region transcription start site region 40062
Tssr44314 4 141422623 to 141422639 16 - TSS region transcription start site region 44314
Tssr40063 4 141423996 to 141424009 13 + TSS region transcription start site region 40063
Tssr44315 4 141424034 to 141424074 40 - TSS region transcription start site region 44315
Tssr40064 4 141424056 to 141424070 14 + TSS region transcription start site region 40064
Tssr40065 4 141424071 to 141424097 26 + TSS region transcription start site region 40065
Tssr44316 4 141424117 to 141424172 55 - TSS region transcription start site region 44316
Tssr44317 4 141424175 to 141424200 25 - TSS region transcription start site region 44317
Tssr40066 4 141424200 to 141424201 1 + TSS region transcription start site region 40066
Tssr40067 4 141424248 to 141424255 7 + TSS region transcription start site region 40067
Tssr40068 4 141424300 to 141424310 10 + TSS region transcription start site region 40068
Tssr40069 4 141424432 to 141424437 5 + TSS region transcription start site region 40069
Tssr40070 4 141424517 to 141424531 14 + TSS region transcription start site region 40070
Tssr40071 4 141424541 to 141424548 7 + TSS region transcription start site region 40071
Tssr44318 4 141424558 to 141424600 42 - TSS region transcription start site region 44318
Tssr40072 4 141424586 to 141424593 7 + TSS region transcription start site region 40072
Tssr40073 4 141424609 to 141424618 9 + TSS region transcription start site region 40073
Tssr40074 4 141424634 to 141424645 11 + TSS region transcription start site region 40074
Tssr40075 4 141424647 to 141424669 22 + TSS region transcription start site region 40075
Tssr40076 4 141424674 to 141424685 11 + TSS region transcription start site region 40076
Tssr40077 4 141424693 to 141424705 12 + TSS region transcription start site region 40077
Tssr44319 4 141425568 to 141425603 35 - TSS region transcription start site region 44319
Cpgi15228 4 141425836 to 141426166 330 CpG island CpG island 15228
Tssr40078 4 141426409 to 141426420 11 + TSS region transcription start site region 40078
Srarp 4 141432672 to 141436105 3433 - protein coding gene steroid receptor associated and regulated protein
Cpgi15229 4 141433169 to 141433536 367 CpG island CpG island 15229
Gm42337 4 141443986 to 141444658 672 - lncRNA gene predicted gene, 42337
Cpgi15230 4 141444481 to 141445704 1223 CpG island CpG island 15230
Zbtb17 4 141444654 to 141467930 23276 + protein coding gene zinc finger and BTB domain containing 17
Tssr40079 4 141444657 to 141444714 57 + TSS region transcription start site region 40079
Tssr44320 4 141445429 to 141445440 11 - TSS region transcription start site region 44320
Spen 4 141467890 to 141538597 70707 - protein coding gene spen family transcription repressor
Cpgi15231 4 141477458 to 141477886 428 CpG island CpG island 15231
Tssr1361 4 141477517 to 141477524 7 - TSS region transcription start site region 1361
Cpgi15232 4 141478332 to 141479141 809 CpG island CpG island 15232
Gm4123 4 141535513 to 141537422 1909 + unclassified gene predicted gene 4123
Cpgi15233 4 141536165 to 141537207 1042 CpG island CpG island 15233
Cpgi15234 4 141537419 to 141539085 1666 CpG island CpG island 15234
Tssr44321 4 141538434 to 141538525 91 - TSS region transcription start site region 44321
Tssr44322 4 141538562 to 141538626 64 - TSS region transcription start site region 44322
B830004H01Rik 4 141539208 to 141543604 4396 unclassified non-coding RNA gene RIKEN cDNA B830004H01 gene
Cpgi15235 4 141545097 to 141547224 2127 CpG island CpG island 15235
Tssr40080 4 141545213 to 141545230 17 + TSS region transcription start site region 40080
Tssr44323 4 141545864 to 141545897 33 - TSS region transcription start site region 44323
Tssr40081 4 141546141 to 141546202 61 + TSS region transcription start site region 40081
B330016D10Rik 4 141546189 to 141547892 1703 + unclassified non-coding RNA gene RIKEN cDNA B330016D10 gene
Tssr1362 4 141546765 to 141546799 34 + TSS region transcription start site region 1362
Tssr40082 4 141546800 to 141546829 29 + TSS region transcription start site region 40082
Tssr44324 4 141547039 to 141547057 18 - TSS region transcription start site region 44324
Tssr44325 4 141559419 to 141559427 8 - TSS region transcription start site region 44325
Cpgi15236 4 141559532 to 141560025 493 CpG island CpG island 15236
Tssr44326 4 141566337 to 141566344 7 - TSS region transcription start site region 44326
Tssr44327 4 141566353 to 141566381 28 - TSS region transcription start site region 44327
Tssr44328 4 141566384 to 141566393 9 - TSS region transcription start site region 44328
Tssr40083 4 141566483 to 141566500 17 + TSS region transcription start site region 40083
Tssr44329 4 141571482 to 141571489 7 - TSS region transcription start site region 44329
Tssr44330 4 141571517 to 141571544 27 - TSS region transcription start site region 44330
Tssr44331 4 141571611 to 141571634 23 - TSS region transcription start site region 44331
Tssr40084 4 141572261 to 141572272 11 + TSS region transcription start site region 40084
Tssr40085 4 141573265 to 141573288 23 + TSS region transcription start site region 40085
Tssr40086 4 141573481 to 141573526 45 + TSS region transcription start site region 40086
Fblim1 4 141576062 to 141606052 29990 - protein coding gene filamin binding LIM protein 1
Tssr44332 4 141576805 to 141576834 29 - TSS region transcription start site region 44332
Tssr44333 4 141581389 to 141581395 6 - TSS region transcription start site region 44333
Tssr44334 4 141586803 to 141586806 3 - TSS region transcription start site region 44334
Tssr44335 4 141595935 to 141595961 26 - TSS region transcription start site region 44335
D4Mit284 4 141596121 to 141596243 122 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 284
Tssr44336 4 141598209 to 141598229 20 - TSS region transcription start site region 44336
Tssr44337 4 141598230 to 141598245 15 - TSS region transcription start site region 44337
Cpgi15237 4 141599322 to 141600201 879 CpG island CpG island 15237
Tssr44338 4 141599868 to 141599906 38 - TSS region transcription start site region 44338
Tssr44339 4 141599942 to 141599953 11 - TSS region transcription start site region 44339
Tssr44340 4 141600872 to 141600887 15 - TSS region transcription start site region 44340
Tssr44341 4 141601612 to 141601663 51 - TSS region transcription start site region 44341
Tssr44342 4 141601668 to 141601675 7 - TSS region transcription start site region 44342
Tssr44343 4 141601676 to 141601738 62 - TSS region transcription start site region 44343
Tssr44344 4 141605976 to 141606008 32 - TSS region transcription start site region 44344
Tssr44345 4 141606011 to 141606058 47 - TSS region transcription start site region 44345
Tssr44346 4 141606103 to 141606112 9 - TSS region transcription start site region 44346
Tmem82 4 141614229 to 141618633 4404 - protein coding gene transmembrane protein 82
Tssr40087 4 141614313 to 141614315 2 + TSS region transcription start site region 40087
Tssr40088 4 141614340 to 141614389 49 + TSS region transcription start site region 40088
AI507597 4 141614370 to 141615604 1234 + antisense lncRNA gene expressed sequence AI507597
Tssr40089 4 141614584 to 141614593 9 + TSS region transcription start site region 40089
Cpgi15238 4 141617310 to 141618032 722 CpG island CpG island 15238
Tssr44347 4 141617996 to 141618056 60 - TSS region transcription start site region 44347
Slc25a34 4 141618824 to 141623821 4997 - protein coding gene solute carrier family 25, member 34
Tssr1363 4 141623138 to 141623143 5 - TSS region transcription start site region 1363
Tssr40090 4 141623276 to 141623285 9 + TSS region transcription start site region 40090
Tssr44348 4 141623799 to 141623840 41 - TSS region transcription start site region 44348
Plekhm2 4 141625732 to 141664115 38383 - protein coding gene pleckstrin homology domain containing, family M (with RUN domain) member 2
Cpgi15239 4 141628239 to 141628585 346 CpG island CpG island 15239
Tssr44349 4 141642130 to 141642147 17 - TSS region transcription start site region 44349
Tssr44350 4 141642168 to 141642201 33 - TSS region transcription start site region 44350
Tssr44351 4 141642823 to 141642834 11 - TSS region transcription start site region 44351
Tssr44352 4 141644964 to 141644969 5 - TSS region transcription start site region 44352
4930451G21Rik 4 141652123 to 141654919 2796 unclassified gene RIKEN cDNA 4930451G21 gene
Tssr44353 4 141652372 to 141652413 41 - TSS region transcription start site region 44353
Tssr44354 4 141652455 to 141652479 24 - TSS region transcription start site region 44354
Cpgi15240 4 141663184 to 141664580 1396 CpG island CpG island 15240
Tssr44355 4 141663999 to 141664021 22 - TSS region transcription start site region 44355
Tssr44356 4 141664063 to 141664170 107 - TSS region transcription start site region 44356
Tssr40091 4 141664187 to 141664231 44 + TSS region transcription start site region 40091
Tssr40092 4 141664241 to 141664249 8 + TSS region transcription start site region 40092
Tssr44357 4 141679549 to 141679551 2 - TSS region transcription start site region 44357
Ddi2 4 141683563 to 141723419 39856 - protein coding gene DNA-damage inducible protein 2
Rsc1a1 4 141683851 to 141685599 1748 - protein coding gene regulatory solute carrier protein, family 1, member 1
Tssr44358 4 141696043 to 141696047 4 - TSS region transcription start site region 44358
Tssr44359 4 141708402 to 141708414 12 - TSS region transcription start site region 44359
Tssr40093 4 141714044 to 141714049 5 + TSS region transcription start site region 40093