Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:141281409-141571420

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104 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr40043 4 141282785 to 141282826 41 + TSS region transcription start site region 40043
Tssr40044 4 141282917 to 141282936 19 + TSS region transcription start site region 40044
Tssr44305 4 141284155 to 141284176 21 - TSS region transcription start site region 44305
Tssr40045 4 141284798 to 141284824 26 + TSS region transcription start site region 40045
Cpgi15217 4 141287312 to 141287641 329 CpG island CpG island 15217
Cpgi15218 4 141291175 to 141292278 1103 CpG island CpG island 15218
Tssr40046 4 141296263 to 141296267 4 + TSS region transcription start site region 40046
Cpgi15219 4 141301130 to 141302327 1197 CpG island CpG island 15219
Tssr40047 4 141301228 to 141301250 22 + TSS region transcription start site region 40047
Epha2 4 141301240 to 141329384 28144 + protein coding gene Eph receptor A2
Tssr40048 4 141301259 to 141301276 17 + TSS region transcription start site region 40048
Cpgi15220 4 141308553 to 141309091 538 CpG island CpG island 15220
Gm25690 4 141346164 to 141346240 76 + miRNA gene predicted gene, 25690
Gm13074 4 141347814 to 141350853 3039 + lincRNA gene predicted gene 13074
Gm13076 4 141356888 to 141357091 203 - pseudogene predicted gene 13076
Cpgi15221 4 141367898 to 141368798 900 CpG island CpG island 15221
Tssr40049 4 141368116 to 141368179 63 + TSS region transcription start site region 40049
Fam131c 4 141368220 to 141384175 15955 + protein coding gene family with sequence similarity 131, member C
Cpgi15222 4 141382157 to 141382884 727 CpG island CpG island 15222
Tssr40050 4 141382397 to 141382426 29 + TSS region transcription start site region 40050
Clcnka 4 141384611 to 141398706 14095 - protein coding gene chloride channel, voltage-sensitive Ka
Tssr44306 4 141394609 to 141394638 29 - TSS region transcription start site region 44306
Cpgi15223 4 141394920 to 141395197 277 CpG island CpG island 15223
Tssr44307 4 141398231 to 141398241 10 - TSS region transcription start site region 44307
Tssr44308 4 141398682 to 141398726 44 - TSS region transcription start site region 44308
Tssr44309 4 141398734 to 141398746 12 - TSS region transcription start site region 44309
Tssr40051 4 141398826 to 141398842 16 + TSS region transcription start site region 40051
Gm13075 4 141398829 to 141411191 12362 + antisense lncRNA gene predicted gene 13075
Gm34693 4 141399759 to 141400636 877 - lncRNA gene predicted gene, 34693
Clcnkb 4 141404357 to 141416013 11656 - protein coding gene chloride channel, voltage-sensitive Kb
Cpgi15224 4 141404662 to 141404957 295 CpG island CpG island 15224
Cpgi15225 4 141411579 to 141411886 307 CpG island CpG island 15225
Tssr44310 4 141415970 to 141415997 27 - TSS region transcription start site region 44310
Tssr44311 4 141416002 to 141416016 14 - TSS region transcription start site region 44311
Tssr44312 4 141416019 to 141416025 6 - TSS region transcription start site region 44312
Tssr44313 4 141416028 to 141416037 9 - TSS region transcription start site region 44313
Cpgi15226 4 141419478 to 141419678 200 CpG island CpG island 15226
Tssr40052 4 141420227 to 141420237 10 + TSS region transcription start site region 40052
Tssr40053 4 141420757 to 141420798 41 + TSS region transcription start site region 40053
Hspb7 4 141420779 to 141425310 4531 + protein coding gene heat shock protein family, member 7 (cardiovascular)
Cpgi15227 4 141421634 to 141421840 206 CpG island CpG island 15227
Tssr40054 4 141421659 to 141421676 17 + TSS region transcription start site region 40054
Tssr40055 4 141421687 to 141421689 2 + TSS region transcription start site region 40055
Tssr40056 4 141421694 to 141421710 16 + TSS region transcription start site region 40056
Tssr40057 4 141421750 to 141421771 21 + TSS region transcription start site region 40057
Tssr40058 4 141421785 to 141421798 13 + TSS region transcription start site region 40058
Tssr40059 4 141421808 to 141421822 14 + TSS region transcription start site region 40059
Tssr40060 4 141421841 to 141421882 41 + TSS region transcription start site region 40060
Tssr40061 4 141421884 to 141421892 8 + TSS region transcription start site region 40061
Tssr40062 4 141422508 to 141422523 15 + TSS region transcription start site region 40062
Tssr44314 4 141422623 to 141422639 16 - TSS region transcription start site region 44314
Tssr40063 4 141423996 to 141424009 13 + TSS region transcription start site region 40063
Tssr44315 4 141424034 to 141424074 40 - TSS region transcription start site region 44315
Tssr40064 4 141424056 to 141424070 14 + TSS region transcription start site region 40064
Tssr40065 4 141424071 to 141424097 26 + TSS region transcription start site region 40065
Tssr44316 4 141424117 to 141424172 55 - TSS region transcription start site region 44316
Tssr44317 4 141424175 to 141424200 25 - TSS region transcription start site region 44317
Tssr40066 4 141424200 to 141424201 1 + TSS region transcription start site region 40066
Tssr40067 4 141424248 to 141424255 7 + TSS region transcription start site region 40067
Tssr40068 4 141424300 to 141424310 10 + TSS region transcription start site region 40068
Tssr40069 4 141424432 to 141424437 5 + TSS region transcription start site region 40069
Tssr40070 4 141424517 to 141424531 14 + TSS region transcription start site region 40070
Tssr40071 4 141424541 to 141424548 7 + TSS region transcription start site region 40071
Tssr44318 4 141424558 to 141424600 42 - TSS region transcription start site region 44318
Tssr40072 4 141424586 to 141424593 7 + TSS region transcription start site region 40072
Tssr40073 4 141424609 to 141424618 9 + TSS region transcription start site region 40073
Tssr40074 4 141424634 to 141424645 11 + TSS region transcription start site region 40074
Tssr40075 4 141424647 to 141424669 22 + TSS region transcription start site region 40075
Tssr40076 4 141424674 to 141424685 11 + TSS region transcription start site region 40076
Tssr40077 4 141424693 to 141424705 12 + TSS region transcription start site region 40077
Tssr44319 4 141425568 to 141425603 35 - TSS region transcription start site region 44319
Cpgi15228 4 141425836 to 141426166 330 CpG island CpG island 15228
Tssr40078 4 141426409 to 141426420 11 + TSS region transcription start site region 40078
Srarp 4 141432672 to 141436105 3433 - protein coding gene steroid receptor associated and regulated protein
Cpgi15229 4 141433169 to 141433536 367 CpG island CpG island 15229
Gm42337 4 141443986 to 141444658 672 - lncRNA gene predicted gene, 42337
Cpgi15230 4 141444481 to 141445704 1223 CpG island CpG island 15230
Zbtb17 4 141444654 to 141467930 23276 + protein coding gene zinc finger and BTB domain containing 17
Tssr40079 4 141444657 to 141444714 57 + TSS region transcription start site region 40079
Tssr44320 4 141445429 to 141445440 11 - TSS region transcription start site region 44320
Spen 4 141467890 to 141538597 70707 - protein coding gene spen family transcription repressor
Cpgi15231 4 141477458 to 141477886 428 CpG island CpG island 15231
Tssr1361 4 141477517 to 141477524 7 - TSS region transcription start site region 1361
Cpgi15232 4 141478332 to 141479141 809 CpG island CpG island 15232
Gm4123 4 141535513 to 141537422 1909 + unclassified gene predicted gene 4123
Cpgi15233 4 141536165 to 141537207 1042 CpG island CpG island 15233
Cpgi15234 4 141537419 to 141539085 1666 CpG island CpG island 15234
Tssr44321 4 141538434 to 141538525 91 - TSS region transcription start site region 44321
Tssr44322 4 141538562 to 141538626 64 - TSS region transcription start site region 44322
B830004H01Rik 4 141539208 to 141543604 4396 unclassified non-coding RNA gene RIKEN cDNA B830004H01 gene
Cpgi15235 4 141545097 to 141547224 2127 CpG island CpG island 15235
Tssr40080 4 141545213 to 141545230 17 + TSS region transcription start site region 40080
Tssr44323 4 141545864 to 141545897 33 - TSS region transcription start site region 44323
Tssr40081 4 141546141 to 141546202 61 + TSS region transcription start site region 40081
B330016D10Rik 4 141546189 to 141547892 1703 + unclassified non-coding RNA gene RIKEN cDNA B330016D10 gene
Tssr1362 4 141546765 to 141546799 34 + TSS region transcription start site region 1362
Tssr40082 4 141546800 to 141546829 29 + TSS region transcription start site region 40082
Tssr44324 4 141547039 to 141547057 18 - TSS region transcription start site region 44324
Tssr44325 4 141559419 to 141559427 8 - TSS region transcription start site region 44325
Cpgi15236 4 141559532 to 141560025 493 CpG island CpG island 15236
Tssr44326 4 141566337 to 141566344 7 - TSS region transcription start site region 44326
Tssr44327 4 141566353 to 141566381 28 - TSS region transcription start site region 44327
Tssr44328 4 141566384 to 141566393 9 - TSS region transcription start site region 44328
Tssr40083 4 141566483 to 141566500 17 + TSS region transcription start site region 40083