Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:141089499-141407564

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76 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nba1 4 131923413 to 141151964 9228551 QTL New Zealand Black autoimmunity 1
Spata21 4 141088333 to 141112760 24427 + protein coding gene spermatogenesis associated 21
Tssr40026 4 141096938 to 141096950 12 + TSS region transcription start site region 40026
Tssr40027 4 141097081 to 141097092 11 + TSS region transcription start site region 40027
Tssr40028 4 141099789 to 141099792 3 + TSS region transcription start site region 40028
Tssr40029 4 141107098 to 141107107 9 + TSS region transcription start site region 40029
Szrd1 4 141113001 to 141139775 26774 - protein coding gene SUZ RNA binding domain containing 1
Tssr44296 4 141113669 to 141113686 17 - TSS region transcription start site region 44296
Tssr44297 4 141115273 to 141115291 18 - TSS region transcription start site region 44297
Tssr44298 4 141115340 to 141115393 53 - TSS region transcription start site region 44298
Tssr44299 4 141115649 to 141115669 20 - TSS region transcription start site region 44299
4921514A10Rik 4 141115660 to 141118087 2427 + antisense lncRNA gene RIKEN cDNA 4921514A10 gene
Tssr44300 4 141135223 to 141135263 40 - TSS region transcription start site region 44300
Tssr44301 4 141137382 to 141137387 5 - TSS region transcription start site region 44301
Cpgi15209 4 141138971 to 141140007 1036 CpG island CpG island 15209
Tssr44302 4 141139747 to 141139772 25 - TSS region transcription start site region 44302
Tssr44303 4 141139799 to 141139808 9 - TSS region transcription start site region 44303
Cpgi15210 4 141147369 to 141148805 1436 CpG island CpG island 15210
Tssr40030 4 141147911 to 141147971 60 + TSS region transcription start site region 40030
Fbxo42 4 141147913 to 141204062 56149 + protein coding gene F-box protein 42
Tssr40031 4 141150476 to 141150483 7 + TSS region transcription start site region 40031
Tssr40032 4 141151011 to 141151050 39 + TSS region transcription start site region 40032
D4Mit48 4 141151816 to 141151964 148 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 48
Tssr40033 4 141180202 to 141180207 5 + TSS region transcription start site region 40033
Tssr44304 4 141184028 to 141184041 13 - TSS region transcription start site region 44304
Tssr40034 4 141193662 to 141193683 21 + TSS region transcription start site region 40034
Tssr40035 4 141210612 to 141210635 23 + TSS region transcription start site region 40035
Cplane2 4 141213667 to 141220114 6447 + protein coding gene ciliogenesis and planar polarity effector 2
Cpgi15211 4 141213840 to 141214579 739 CpG island CpG island 15211
Tssr40036 4 141213948 to 141213998 50 + TSS region transcription start site region 40036
Tssr40037 4 141222719 to 141222724 5 + TSS region transcription start site region 40037
C630004L07Rik 4 141238179 to 141239453 1274 - unclassified gene RIKEN cDNA C630004L07 gene
Cpgi15212 4 141239325 to 141239905 580 CpG island CpG island 15212
Arhgef19 4 141239499 to 141257564 18065 + protein coding gene Rho guanine nucleotide exchange factor (GEF) 19
Tssr40038 4 141239569 to 141239633 64 + TSS region transcription start site region 40038
Tssr40039 4 141239634 to 141239657 23 + TSS region transcription start site region 40039
Tssr40040 4 141242850 to 141242909 59 + TSS region transcription start site region 40040
Tssr40041 4 141245080 to 141245102 22 + TSS region transcription start site region 40041
Cpgi15213 4 141246969 to 141248829 1860 CpG island CpG island 15213
Cpgi15214 4 141249063 to 141249466 403 CpG island CpG island 15214
Cpgi15215 4 141250702 to 141251060 358 CpG island CpG island 15215
Gm13055 4 141261762 to 141266016 4254 - antisense lncRNA gene predicted gene 13055
Cpgi15216 4 141273158 to 141273397 239 CpG island CpG island 15216
Tssr40042 4 141278433 to 141278462 29 + TSS region transcription start site region 40042
Gm13056 4 141278439 to 141279794 1355 + lincRNA gene predicted gene 13056
Tssr40043 4 141282785 to 141282826 41 + TSS region transcription start site region 40043
Tssr40044 4 141282917 to 141282936 19 + TSS region transcription start site region 40044
Tssr44305 4 141284155 to 141284176 21 - TSS region transcription start site region 44305
Tssr40045 4 141284798 to 141284824 26 + TSS region transcription start site region 40045
Cpgi15217 4 141287312 to 141287641 329 CpG island CpG island 15217
Cpgi15218 4 141291175 to 141292278 1103 CpG island CpG island 15218
Tssr40046 4 141296263 to 141296267 4 + TSS region transcription start site region 40046
Cpgi15219 4 141301130 to 141302327 1197 CpG island CpG island 15219
Tssr40047 4 141301228 to 141301250 22 + TSS region transcription start site region 40047
Epha2 4 141301240 to 141329384 28144 + protein coding gene Eph receptor A2
Tssr40048 4 141301259 to 141301276 17 + TSS region transcription start site region 40048
Cpgi15220 4 141308553 to 141309091 538 CpG island CpG island 15220
Gm25690 4 141346164 to 141346240 76 + miRNA gene predicted gene, 25690
Gm13074 4 141347814 to 141350853 3039 + lincRNA gene predicted gene 13074
Gm13076 4 141356888 to 141357091 203 - pseudogene predicted gene 13076
Cpgi15221 4 141367898 to 141368798 900 CpG island CpG island 15221
Tssr40049 4 141368116 to 141368179 63 + TSS region transcription start site region 40049
Fam131c 4 141368220 to 141384175 15955 + protein coding gene family with sequence similarity 131, member C
Cpgi15222 4 141382157 to 141382884 727 CpG island CpG island 15222
Tssr40050 4 141382397 to 141382426 29 + TSS region transcription start site region 40050
Clcnka 4 141384611 to 141398706 14095 - protein coding gene chloride channel, voltage-sensitive Ka
Tssr44306 4 141394609 to 141394638 29 - TSS region transcription start site region 44306
Cpgi15223 4 141394920 to 141395197 277 CpG island CpG island 15223
Tssr44307 4 141398231 to 141398241 10 - TSS region transcription start site region 44307
Tssr44308 4 141398682 to 141398726 44 - TSS region transcription start site region 44308
Tssr44309 4 141398734 to 141398746 12 - TSS region transcription start site region 44309
Tssr40051 4 141398826 to 141398842 16 + TSS region transcription start site region 40051
Gm13075 4 141398829 to 141411191 12362 + antisense lncRNA gene predicted gene 13075
Gm34693 4 141399759 to 141400636 877 - lncRNA gene predicted gene, 34693
Clcnkb 4 141404357 to 141416013 11656 - protein coding gene chloride channel, voltage-sensitive Kb
Cpgi15224 4 141404662 to 141404957 295 CpG island CpG island 15224