Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:140704066-141034541

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80 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rcc2 4 140701473 to 140723220 21747 + protein coding gene regulator of chromosome condensation 2
Tssr39990 4 140712780 to 140712782 2 + TSS region transcription start site region 39990
Tssr39991 4 140714294 to 140714305 11 + TSS region transcription start site region 39991
Tssr39992 4 140714318 to 140714357 39 + TSS region transcription start site region 39992
Gm25951 4 140717043 to 140717106 63 + miRNA gene predicted gene, 25951
Tssr39993 4 140720540 to 140720567 27 + TSS region transcription start site region 39993
Tssr39994 4 140721168 to 140721193 25 + TSS region transcription start site region 39994
Padi6 4 140727355 to 140742643 15288 - protein coding gene peptidyl arginine deiminase, type VI
D4Mit64 4 140740705 to 140740892 187 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 64
W10q10 4 140740892 to 89063832 -51677060 QTL weight 10 weeks QTL 10
W6q13 4 140740892 to 89063832 -51677060 QTL weight 6 weeks QTL 13
Lvrq8 4 140740892 to 89063832 -51677060 QTL liver weight QTL 8
W3q17 4 140740892 to 89063832 -51677060 QTL weight 3 weeks QTL 17
Tssr44276 4 140742639 to 140742644 5 - TSS region transcription start site region 44276
Padi4 4 140745865 to 140774236 28371 - protein coding gene peptidyl arginine deiminase, type IV
Cpgi15196 4 140750370 to 140750733 363 CpG island CpG island 15196
Tssr1360 4 140750514 to 140750521 7 - TSS region transcription start site region 1360
Tssr44277 4 140750546 to 140750563 17 - TSS region transcription start site region 44277
Tssr44278 4 140750569 to 140750587 18 - TSS region transcription start site region 44278
Tssr44279 4 140750602 to 140750618 16 - TSS region transcription start site region 44279
Tssr44280 4 140774196 to 140774212 16 - TSS region transcription start site region 44280
Padi3 4 140785369 to 140810648 25279 - protein coding gene peptidyl arginine deiminase, type III
Tssr44281 4 140810646 to 140810649 3 - TSS region transcription start site region 44281
Gm13032 4 140810993 to 140817511 6518 + lncRNA gene predicted gene 13032
Padi1 4 140812983 to 140845778 32795 - protein coding gene peptidyl arginine deiminase, type I
Tssr44282 4 140814138 to 140814168 30 - TSS region transcription start site region 44282
Cpgi15197 4 140814600 to 140814933 333 CpG island CpG island 15197
Tssr44283 4 140826544 to 140826590 46 - TSS region transcription start site region 44283
Tssr44284 4 140835735 to 140835749 14 - TSS region transcription start site region 44284
Tssr44285 4 140845770 to 140845785 15 - TSS region transcription start site region 44285
Cpgi15198 4 140869066 to 140869541 475 CpG island CpG island 15198
4930515B02Rik 4 140872693 to 140878055 5362 + lincRNA gene RIKEN cDNA 4930515B02 gene
D4Mit179 4 140879468 to 140879592 124 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 179
Cpgi15199 4 140906210 to 140906638 428 CpG island CpG island 15199
Tssr39995 4 140906335 to 140906353 18 + TSS region transcription start site region 39995
Padi2 4 140906344 to 140952586 46242 + protein coding gene peptidyl arginine deiminase, type II
Tssr39996 4 140906364 to 140906382 18 + TSS region transcription start site region 39996
Tssr44286 4 140906778 to 140906785 7 - TSS region transcription start site region 44286
Gm46719 4 140908974 to 140910338 1364 - lncRNA gene predicted gene, 46719
Cpgi15200 4 140910910 to 140911158 248 CpG island CpG island 15200
Gm26226 4 140918684 to 140918799 115 + snRNA gene predicted gene, 26226
Tssr39997 4 140924238 to 140924258 20 + TSS region transcription start site region 39997
Tssr39998 4 140924259 to 140924280 21 + TSS region transcription start site region 39998
Tssr39999 4 140924288 to 140924311 23 + TSS region transcription start site region 39999
Gm34375 4 140927227 to 140932057 4830 - lncRNA gene predicted gene, 34375
Tssr40000 4 140945380 to 140945432 52 + TSS region transcription start site region 40000
Tssr40001 4 140946274 to 140946283 9 + TSS region transcription start site region 40001
Gm13031 4 140947666 to 140957902 10236 - antisense lncRNA gene predicted gene 13031
Tssr40002 4 140950062 to 140950079 17 + TSS region transcription start site region 40002
Tssr44287 4 140957846 to 140957858 12 - TSS region transcription start site region 44287
Gm34431 4 140960427 to 140961283 856 - lncRNA gene predicted gene, 34431
Cpgi15201 4 140961109 to 140962084 975 CpG island CpG island 15201
Sdhb 4 140961271 to 140979197 17926 + protein coding gene succinate dehydrogenase complex, subunit B, iron sulfur (Ip)
Tssr40003 4 140961282 to 140961293 11 + TSS region transcription start site region 40003
Tssr40004 4 140961301 to 140961312 11 + TSS region transcription start site region 40004
Tssr40005 4 140961372 to 140961402 30 + TSS region transcription start site region 40005
Tssr40006 4 140961404 to 140961415 11 + TSS region transcription start site region 40006
Tssr40007 4 140963194 to 140963214 20 + TSS region transcription start site region 40007
Tssr40008 4 140966510 to 140966515 5 + TSS region transcription start site region 40008
Tssr40009 4 140971837 to 140971856 19 + TSS region transcription start site region 40009
Tssr40010 4 140971871 to 140971888 17 + TSS region transcription start site region 40010
Tssr40011 4 140971889 to 140971904 15 + TSS region transcription start site region 40011
Tssr40012 4 140971980 to 140971996 16 + TSS region transcription start site region 40012
Tssr40013 4 140977386 to 140977419 33 + TSS region transcription start site region 40013
Tssr44288 4 140979184 to 140979196 12 - TSS region transcription start site region 44288
Tssr40014 4 140983550 to 140983565 15 + TSS region transcription start site region 40014
Cpgi15202 4 140986604 to 140987381 777 CpG island CpG island 15202
Atp13a2 4 140986873 to 141007330 20457 + protein coding gene ATPase type 13A2
Tssr40015 4 140986881 to 140986936 55 + TSS region transcription start site region 40015
Tssr40016 4 140992365 to 140992378 13 + TSS region transcription start site region 40016
Tssr40017 4 140992416 to 140992427 11 + TSS region transcription start site region 40017
Tssr40018 4 140995556 to 140995583 27 + TSS region transcription start site region 40018
Tssr40019 4 141005085 to 141005102 17 + TSS region transcription start site region 40019
Mfap2 4 141010424 to 141015984 5560 + protein coding gene microfibrillar-associated protein 2
Cpgi15203 4 141010452 to 141010997 545 CpG island CpG island 15203
Tssr40020 4 141010673 to 141010696 23 + TSS region transcription start site region 40020
Tssr40021 4 141012835 to 141012852 17 + TSS region transcription start site region 40021
Tssr40022 4 141013799 to 141013820 21 + TSS region transcription start site region 40022
Crocc 4 141016637 to 141060550 43913 - protein coding gene ciliary rootlet coiled-coil, rootletin
Cpgi15204 4 141021618 to 141021773 155 CpG island CpG island 15204