Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:140556873-141437330

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272 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nba1 4 131923413 to 141151964 9228551 QTL New Zealand Black autoimmunity 1
Arhgef10l 4 140514485 to 140665905 151420 - protein coding gene Rho guanine nucleotide exchange factor (GEF) 10-like
Cpgi15192 4 140581429 to 140581759 330 CpG island CpG island 15192
Tssr44249 4 140581500 to 140581529 29 - TSS region transcription start site region 44249
Tssr44250 4 140581532 to 140581558 26 - TSS region transcription start site region 44250
Tssr44251 4 140581747 to 140581773 26 - TSS region transcription start site region 44251
Tssr44252 4 140581774 to 140581795 21 - TSS region transcription start site region 44252
Tssr44253 4 140581809 to 140581820 11 - TSS region transcription start site region 44253
Tssr44254 4 140581917 to 140581957 40 - TSS region transcription start site region 44254
Tssr44255 4 140587841 to 140587858 17 - TSS region transcription start site region 44255
Tssr44256 4 140587933 to 140587949 16 - TSS region transcription start site region 44256
Gm42335 4 140605107 to 140606567 1460 + lncRNA gene predicted gene, 42335
Tssr44257 4 140610571 to 140610602 31 - TSS region transcription start site region 44257
Tssr44258 4 140617062 to 140617084 22 - TSS region transcription start site region 44258
Tssr44259 4 140620626 to 140620650 24 - TSS region transcription start site region 44259
Tssr44260 4 140620654 to 140620684 30 - TSS region transcription start site region 44260
Cpgi15193 4 140648187 to 140649296 1109 CpG island CpG island 15193
Tssr44261 4 140648716 to 140648729 13 - TSS region transcription start site region 44261
Tssr44262 4 140648736 to 140648781 45 - TSS region transcription start site region 44262
Tssr44263 4 140648823 to 140648836 13 - TSS region transcription start site region 44263
Tssr44264 4 140653952 to 140653998 46 - TSS region transcription start site region 44264
Tssr44265 4 140659533 to 140659544 11 - TSS region transcription start site region 44265
Tssr44266 4 140661296 to 140661306 10 - TSS region transcription start site region 44266
Tssr44267 4 140665854 to 140665867 13 - TSS region transcription start site region 44267
Tssr44268 4 140665874 to 140665886 12 - TSS region transcription start site region 44268
Tssr44269 4 140665891 to 140665913 22 - TSS region transcription start site region 44269
Gm13025 4 140679753 to 140684617 4864 + lincRNA gene predicted gene 13025
Tssr39969 4 140691301 to 140691305 4 + TSS region transcription start site region 39969
Gm23045 4 140692697 to 140692792 95 + miRNA gene predicted gene, 23045
Cpgi15194 4 140699513 to 140699979 466 CpG island CpG island 15194
Tssr44270 4 140699643 to 140699650 7 - TSS region transcription start site region 44270
Tssr44271 4 140699665 to 140699683 18 - TSS region transcription start site region 44271
Tssr44272 4 140699799 to 140699823 24 - TSS region transcription start site region 44272
Tssr39970 4 140699866 to 140699882 16 + TSS region transcription start site region 39970
Tssr39971 4 140699935 to 140699955 20 + TSS region transcription start site region 39971
Tssr39972 4 140699964 to 140699975 11 + TSS region transcription start site region 39972
Tssr39973 4 140699986 to 140699998 12 + TSS region transcription start site region 39973
Tssr39974 4 140700335 to 140700346 11 + TSS region transcription start site region 39974
Tssr39975 4 140700471 to 140700485 14 + TSS region transcription start site region 39975
Tssr39976 4 140700487 to 140700529 42 + TSS region transcription start site region 39976
Tssr39977 4 140700602 to 140700613 11 + TSS region transcription start site region 39977
Cpgi15195 4 140701065 to 140703374 2309 CpG island CpG island 15195
Tssr44273 4 140701069 to 140701089 20 - TSS region transcription start site region 44273
Tssr39978 4 140701426 to 140701437 11 + TSS region transcription start site region 39978
Tssr39979 4 140701447 to 140701463 16 + TSS region transcription start site region 39979
Tssr39980 4 140701466 to 140701509 43 + TSS region transcription start site region 39980
Rcc2 4 140701473 to 140723220 21747 + protein coding gene regulator of chromosome condensation 2
Tssr39981 4 140701510 to 140701521 11 + TSS region transcription start site region 39981
Tssr39982 4 140701522 to 140701548 26 + TSS region transcription start site region 39982
Tssr39983 4 140701608 to 140701619 11 + TSS region transcription start site region 39983
Tssr39984 4 140701833 to 140701839 6 + TSS region transcription start site region 39984
Tssr39985 4 140701895 to 140701922 27 + TSS region transcription start site region 39985
Tssr39986 4 140701936 to 140701962 26 + TSS region transcription start site region 39986
Tssr39987 4 140702081 to 140702150 69 + TSS region transcription start site region 39987
Tssr39988 4 140702177 to 140702198 21 + TSS region transcription start site region 39988
Tssr39989 4 140702216 to 140702238 22 + TSS region transcription start site region 39989
Tssr44274 4 140702398 to 140702448 50 - TSS region transcription start site region 44274
Tssr44275 4 140703666 to 140703675 9 - TSS region transcription start site region 44275
Tssr39990 4 140712780 to 140712782 2 + TSS region transcription start site region 39990
Tssr39991 4 140714294 to 140714305 11 + TSS region transcription start site region 39991
Tssr39992 4 140714318 to 140714357 39 + TSS region transcription start site region 39992
Gm25951 4 140717043 to 140717106 63 + miRNA gene predicted gene, 25951
Tssr39993 4 140720540 to 140720567 27 + TSS region transcription start site region 39993
Tssr39994 4 140721168 to 140721193 25 + TSS region transcription start site region 39994
Padi6 4 140727355 to 140742643 15288 - protein coding gene peptidyl arginine deiminase, type VI
D4Mit64 4 140740705 to 140740892 187 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 64
W3q17 4 140740892 to 89063832 -51677060 QTL weight 3 weeks QTL 17
W10q10 4 140740892 to 89063832 -51677060 QTL weight 10 weeks QTL 10
Lvrq8 4 140740892 to 89063832 -51677060 QTL liver weight QTL 8
W6q13 4 140740892 to 89063832 -51677060 QTL weight 6 weeks QTL 13
Tssr44276 4 140742639 to 140742644 5 - TSS region transcription start site region 44276
Padi4 4 140745865 to 140774236 28371 - protein coding gene peptidyl arginine deiminase, type IV
Cpgi15196 4 140750370 to 140750733 363 CpG island CpG island 15196
Tssr1360 4 140750514 to 140750521 7 - TSS region transcription start site region 1360
Tssr44277 4 140750546 to 140750563 17 - TSS region transcription start site region 44277
Tssr44278 4 140750569 to 140750587 18 - TSS region transcription start site region 44278
Tssr44279 4 140750602 to 140750618 16 - TSS region transcription start site region 44279
Tssr44280 4 140774196 to 140774212 16 - TSS region transcription start site region 44280
Padi3 4 140785369 to 140810648 25279 - protein coding gene peptidyl arginine deiminase, type III
Tssr44281 4 140810646 to 140810649 3 - TSS region transcription start site region 44281
Gm13032 4 140810993 to 140817511 6518 + lncRNA gene predicted gene 13032
Padi1 4 140812983 to 140845778 32795 - protein coding gene peptidyl arginine deiminase, type I
Tssr44282 4 140814138 to 140814168 30 - TSS region transcription start site region 44282
Cpgi15197 4 140814600 to 140814933 333 CpG island CpG island 15197
Tssr44283 4 140826544 to 140826590 46 - TSS region transcription start site region 44283
Tssr44284 4 140835735 to 140835749 14 - TSS region transcription start site region 44284
Tssr44285 4 140845770 to 140845785 15 - TSS region transcription start site region 44285
Cpgi15198 4 140869066 to 140869541 475 CpG island CpG island 15198
4930515B02Rik 4 140872693 to 140878055 5362 + lincRNA gene RIKEN cDNA 4930515B02 gene
D4Mit179 4 140879468 to 140879592 124 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 179
Cpgi15199 4 140906210 to 140906638 428 CpG island CpG island 15199
Tssr39995 4 140906335 to 140906353 18 + TSS region transcription start site region 39995
Padi2 4 140906344 to 140952586 46242 + protein coding gene peptidyl arginine deiminase, type II
Tssr39996 4 140906364 to 140906382 18 + TSS region transcription start site region 39996
Tssr44286 4 140906778 to 140906785 7 - TSS region transcription start site region 44286
Gm46719 4 140908974 to 140910338 1364 - lncRNA gene predicted gene, 46719
Cpgi15200 4 140910910 to 140911158 248 CpG island CpG island 15200
Gm26226 4 140918684 to 140918799 115 + snRNA gene predicted gene, 26226
Tssr39997 4 140924238 to 140924258 20 + TSS region transcription start site region 39997
Tssr39998 4 140924259 to 140924280 21 + TSS region transcription start site region 39998
Tssr39999 4 140924288 to 140924311 23 + TSS region transcription start site region 39999
Gm34375 4 140927227 to 140932057 4830 - lncRNA gene predicted gene, 34375
Tssr40000 4 140945380 to 140945432 52 + TSS region transcription start site region 40000
Tssr40001 4 140946274 to 140946283 9 + TSS region transcription start site region 40001
Gm13031 4 140947666 to 140957902 10236 - antisense lncRNA gene predicted gene 13031
Tssr40002 4 140950062 to 140950079 17 + TSS region transcription start site region 40002
Tssr44287 4 140957846 to 140957858 12 - TSS region transcription start site region 44287
Gm34431 4 140960427 to 140961283 856 - lncRNA gene predicted gene, 34431
Cpgi15201 4 140961109 to 140962084 975 CpG island CpG island 15201
Sdhb 4 140961271 to 140979197 17926 + protein coding gene succinate dehydrogenase complex, subunit B, iron sulfur (Ip)
Tssr40003 4 140961282 to 140961293 11 + TSS region transcription start site region 40003
Tssr40004 4 140961301 to 140961312 11 + TSS region transcription start site region 40004
Tssr40005 4 140961372 to 140961402 30 + TSS region transcription start site region 40005
Tssr40006 4 140961404 to 140961415 11 + TSS region transcription start site region 40006
Tssr40007 4 140963194 to 140963214 20 + TSS region transcription start site region 40007
Tssr40008 4 140966510 to 140966515 5 + TSS region transcription start site region 40008
Tssr40009 4 140971837 to 140971856 19 + TSS region transcription start site region 40009
Tssr40010 4 140971871 to 140971888 17 + TSS region transcription start site region 40010
Tssr40011 4 140971889 to 140971904 15 + TSS region transcription start site region 40011
Tssr40012 4 140971980 to 140971996 16 + TSS region transcription start site region 40012
Tssr40013 4 140977386 to 140977419 33 + TSS region transcription start site region 40013
Tssr44288 4 140979184 to 140979196 12 - TSS region transcription start site region 44288
Tssr40014 4 140983550 to 140983565 15 + TSS region transcription start site region 40014
Cpgi15202 4 140986604 to 140987381 777 CpG island CpG island 15202
Atp13a2 4 140986873 to 141007330 20457 + protein coding gene ATPase type 13A2
Tssr40015 4 140986881 to 140986936 55 + TSS region transcription start site region 40015
Tssr40016 4 140992365 to 140992378 13 + TSS region transcription start site region 40016
Tssr40017 4 140992416 to 140992427 11 + TSS region transcription start site region 40017
Tssr40018 4 140995556 to 140995583 27 + TSS region transcription start site region 40018
Tssr40019 4 141005085 to 141005102 17 + TSS region transcription start site region 40019
Mfap2 4 141010424 to 141015984 5560 + protein coding gene microfibrillar-associated protein 2
Cpgi15203 4 141010452 to 141010997 545 CpG island CpG island 15203
Tssr40020 4 141010673 to 141010696 23 + TSS region transcription start site region 40020
Tssr40021 4 141012835 to 141012852 17 + TSS region transcription start site region 40021
Tssr40022 4 141013799 to 141013820 21 + TSS region transcription start site region 40022
Crocc 4 141016637 to 141060550 43913 - protein coding gene ciliary rootlet coiled-coil, rootletin
Cpgi15204 4 141021618 to 141021773 155 CpG island CpG island 15204
Cpgi15205 4 141040972 to 141041320 348 CpG island CpG island 15205
Cpgi15206 4 141041583 to 141041803 220 CpG island CpG island 15206
Tssr44289 4 141053247 to 141053258 11 - TSS region transcription start site region 44289
Tssr44290 4 141053660 to 141053697 37 - TSS region transcription start site region 44290
Tssr44291 4 141053704 to 141053724 20 - TSS region transcription start site region 44291
Cpgi15207 4 141060017 to 141061236 1219 CpG island CpG island 15207
Tssr44292 4 141060536 to 141060567 31 - TSS region transcription start site region 44292
Necap2 4 141066512 to 141078357 11845 - protein coding gene NECAP endocytosis associated 2
Tssr44293 4 141067261 to 141067268 7 - TSS region transcription start site region 44293
Cpgi15208 4 141077574 to 141078607 1033 CpG island CpG island 15208
Tssr40023 4 141077944 to 141077984 40 + TSS region transcription start site region 40023
Tssr44294 4 141078302 to 141078338 36 - TSS region transcription start site region 44294
Tssr40024 4 141078443 to 141078444 1 + TSS region transcription start site region 40024
Gm13047 4 141084864 to 141085678 814 + pseudogene predicted gene 13047
Tssr44295 4 141088216 to 141088223 7 - TSS region transcription start site region 44295
Spata21 4 141088333 to 141112760 24427 + protein coding gene spermatogenesis associated 21
Tssr40025 4 141088338 to 141088350 12 + TSS region transcription start site region 40025
Tssr40026 4 141096938 to 141096950 12 + TSS region transcription start site region 40026
Tssr40027 4 141097081 to 141097092 11 + TSS region transcription start site region 40027
Tssr40028 4 141099789 to 141099792 3 + TSS region transcription start site region 40028
Tssr40029 4 141107098 to 141107107 9 + TSS region transcription start site region 40029
Szrd1 4 141113001 to 141139775 26774 - protein coding gene SUZ RNA binding domain containing 1
Tssr44296 4 141113669 to 141113686 17 - TSS region transcription start site region 44296
Tssr44297 4 141115273 to 141115291 18 - TSS region transcription start site region 44297
Tssr44298 4 141115340 to 141115393 53 - TSS region transcription start site region 44298
Tssr44299 4 141115649 to 141115669 20 - TSS region transcription start site region 44299
4921514A10Rik 4 141115660 to 141118087 2427 + antisense lncRNA gene RIKEN cDNA 4921514A10 gene
Tssr44300 4 141135223 to 141135263 40 - TSS region transcription start site region 44300
Tssr44301 4 141137382 to 141137387 5 - TSS region transcription start site region 44301
Cpgi15209 4 141138971 to 141140007 1036 CpG island CpG island 15209
Tssr44302 4 141139747 to 141139772 25 - TSS region transcription start site region 44302
Tssr44303 4 141139799 to 141139808 9 - TSS region transcription start site region 44303
Cpgi15210 4 141147369 to 141148805 1436 CpG island CpG island 15210
Tssr40030 4 141147911 to 141147971 60 + TSS region transcription start site region 40030
Fbxo42 4 141147913 to 141204062 56149 + protein coding gene F-box protein 42
Tssr40031 4 141150476 to 141150483 7 + TSS region transcription start site region 40031
Tssr40032 4 141151011 to 141151050 39 + TSS region transcription start site region 40032
D4Mit48 4 141151816 to 141151964 148 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 48
Tssr40033 4 141180202 to 141180207 5 + TSS region transcription start site region 40033
Tssr44304 4 141184028 to 141184041 13 - TSS region transcription start site region 44304
Tssr40034 4 141193662 to 141193683 21 + TSS region transcription start site region 40034
Tssr40035 4 141210612 to 141210635 23 + TSS region transcription start site region 40035
Cplane2 4 141213667 to 141220114 6447 + protein coding gene ciliogenesis and planar polarity effector 2
Cpgi15211 4 141213840 to 141214579 739 CpG island CpG island 15211
Tssr40036 4 141213948 to 141213998 50 + TSS region transcription start site region 40036
Tssr40037 4 141222719 to 141222724 5 + TSS region transcription start site region 40037
C630004L07Rik 4 141238179 to 141239453 1274 - unclassified gene RIKEN cDNA C630004L07 gene
Cpgi15212 4 141239325 to 141239905 580 CpG island CpG island 15212
Arhgef19 4 141239499 to 141257564 18065 + protein coding gene Rho guanine nucleotide exchange factor (GEF) 19
Tssr40038 4 141239569 to 141239633 64 + TSS region transcription start site region 40038
Tssr40039 4 141239634 to 141239657 23 + TSS region transcription start site region 40039
Tssr40040 4 141242850 to 141242909 59 + TSS region transcription start site region 40040
Tssr40041 4 141245080 to 141245102 22 + TSS region transcription start site region 40041
Cpgi15213 4 141246969 to 141248829 1860 CpG island CpG island 15213
Cpgi15214 4 141249063 to 141249466 403 CpG island CpG island 15214
Cpgi15215 4 141250702 to 141251060 358 CpG island CpG island 15215
Gm13055 4 141261762 to 141266016 4254 - antisense lncRNA gene predicted gene 13055
Cpgi15216 4 141273158 to 141273397 239 CpG island CpG island 15216
Tssr40042 4 141278433 to 141278462 29 + TSS region transcription start site region 40042
Gm13056 4 141278439 to 141279794 1355 + lincRNA gene predicted gene 13056
Tssr40043 4 141282785 to 141282826 41 + TSS region transcription start site region 40043
Tssr40044 4 141282917 to 141282936 19 + TSS region transcription start site region 40044
Tssr44305 4 141284155 to 141284176 21 - TSS region transcription start site region 44305