Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:139393686-139755985

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34 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ubr4 4 139380659 to 139489533 108874 + protein coding gene ubiquitin protein ligase E3 component n-recognin 4
Tssr39949 4 139399738 to 139399753 15 + TSS region transcription start site region 39949
Cpgi15169 4 139430009 to 139430288 279 CpG island CpG island 15169
n-TVaac1 4 139430506 to 139430577 71 - tRNA gene nuclear encoded tRNA valine 1 (anticodon AAC)
Tssr39950 4 139431068 to 139431075 7 + TSS region transcription start site region 39950
Tssr39951 4 139431086 to 139431107 21 + TSS region transcription start site region 39951
Tssr39952 4 139431118 to 139431129 11 + TSS region transcription start site region 39952
Tssr39953 4 139431130 to 139431141 11 + TSS region transcription start site region 39953
Tssr1357 4 139460261 to 139460279 18 + TSS region transcription start site region 1357
Tssr39954 4 139484911 to 139484932 21 + TSS region transcription start site region 39954
Iffo2 4 139530548 to 139620382 89834 + protein coding gene intermediate filament family orphan 2
Cpgi15170 4 139556023 to 139556265 242 CpG island CpG island 15170
Cpgi15171 4 139573686 to 139575985 2299 CpG island CpG island 15171
Tssr39955 4 139574644 to 139574690 46 + TSS region transcription start site region 39955
Tssr39956 4 139574697 to 139574725 28 + TSS region transcription start site region 39956
Gm25571 4 139588876 to 139588977 101 - miRNA gene predicted gene, 25571
Tssr39957 4 139592985 to 139592990 5 + TSS region transcription start site region 39957
Tssr44231 4 139599121 to 139599145 24 - TSS region transcription start site region 44231
Gm21969 4 139603186 to 139662691 59505 + protein coding gene predicted gene 21969
Cpgi15172 4 139614832 to 139615079 247 CpG island CpG island 15172
Cpgi15173 4 139616334 to 139616667 333 CpG island CpG island 15173
Tssr44232 4 139622625 to 139622675 50 - TSS region transcription start site region 44232
Tssr39958 4 139622842 to 139622902 60 + TSS region transcription start site region 39958
Aldh4a1 4 139622871 to 139649691 26820 + protein coding gene aldehyde dehydrogenase 4 family, member A1
Panc1 4 139622871 to 150009023 10386152 heritable phenotypic marker pancreas protein 1
Pphc2 4 139622871 to 150009023 10386152 heritable phenotypic marker polyunsaturated fat induced postprandial hypercholesterolemia
Cpgi15174 4 139622967 to 139623633 666 CpG island CpG island 15174
Tssr39959 4 139623089 to 139623134 45 + TSS region transcription start site region 39959
Tssr39960 4 139629399 to 139629407 8 + TSS region transcription start site region 39960
Mir7020 4 139644042 to 139644111 69 + miRNA gene microRNA 7020
Tas1r2 4 139653538 to 139670280 16742 + protein coding gene taste receptor, type 1, member 2
Cpgi15175 4 139669027 to 139669631 604 CpG island CpG island 15175
Gm42334 4 139734957 to 139735657 700 + lncRNA gene predicted gene, 42334
Pax7 4 139737059 to 139833026 95967 - protein coding gene paired box 7