Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:139392553-141461931

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370 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nba1 4 131923413 to 141151964 9228551 QTL New Zealand Black autoimmunity 1
Ubr4 4 139380659 to 139489533 108874 + protein coding gene ubiquitin protein ligase E3 component n-recognin 4
Tssr39949 4 139399738 to 139399753 15 + TSS region transcription start site region 39949
Cpgi15169 4 139430009 to 139430288 279 CpG island CpG island 15169
n-TVaac1 4 139430506 to 139430577 71 - tRNA gene nuclear encoded tRNA valine 1 (anticodon AAC)
Tssr39950 4 139431068 to 139431075 7 + TSS region transcription start site region 39950
Tssr39951 4 139431086 to 139431107 21 + TSS region transcription start site region 39951
Tssr39952 4 139431118 to 139431129 11 + TSS region transcription start site region 39952
Tssr39953 4 139431130 to 139431141 11 + TSS region transcription start site region 39953
Tssr1357 4 139460261 to 139460279 18 + TSS region transcription start site region 1357
Tssr39954 4 139484911 to 139484932 21 + TSS region transcription start site region 39954
Iffo2 4 139530548 to 139620382 89834 + protein coding gene intermediate filament family orphan 2
Cpgi15170 4 139556023 to 139556265 242 CpG island CpG island 15170
Cpgi15171 4 139573686 to 139575985 2299 CpG island CpG island 15171
Tssr39955 4 139574644 to 139574690 46 + TSS region transcription start site region 39955
Tssr39956 4 139574697 to 139574725 28 + TSS region transcription start site region 39956
Gm25571 4 139588876 to 139588977 101 - miRNA gene predicted gene, 25571
Tssr39957 4 139592985 to 139592990 5 + TSS region transcription start site region 39957
Tssr44231 4 139599121 to 139599145 24 - TSS region transcription start site region 44231
Gm21969 4 139603186 to 139662691 59505 + protein coding gene predicted gene 21969
Cpgi15172 4 139614832 to 139615079 247 CpG island CpG island 15172
Cpgi15173 4 139616334 to 139616667 333 CpG island CpG island 15173
Tssr44232 4 139622625 to 139622675 50 - TSS region transcription start site region 44232
Tssr39958 4 139622842 to 139622902 60 + TSS region transcription start site region 39958
Pphc2 4 139622871 to 150009023 10386152 heritable phenotypic marker polyunsaturated fat induced postprandial hypercholesterolemia
Aldh4a1 4 139622871 to 139649691 26820 + protein coding gene aldehyde dehydrogenase 4 family, member A1
Panc1 4 139622871 to 150009023 10386152 heritable phenotypic marker pancreas protein 1
Cpgi15174 4 139622967 to 139623633 666 CpG island CpG island 15174
Tssr39959 4 139623089 to 139623134 45 + TSS region transcription start site region 39959
Tssr39960 4 139629399 to 139629407 8 + TSS region transcription start site region 39960
Mir7020 4 139644042 to 139644111 69 + miRNA gene microRNA 7020
Tas1r2 4 139653538 to 139670280 16742 + protein coding gene taste receptor, type 1, member 2
Cpgi15175 4 139669027 to 139669631 604 CpG island CpG island 15175
Gm42334 4 139734957 to 139735657 700 + lncRNA gene predicted gene, 42334
Pax7 4 139737059 to 139833026 95967 - protein coding gene paired box 7
Cpgi15176 4 139821095 to 139822331 1236 CpG island CpG island 15176
Tssr1358 4 139821644 to 139821645 1 + TSS region transcription start site region 1358
Cpgi15177 4 139823344 to 139824336 992 CpG island CpG island 15177
Cpgi15178 4 139827913 to 139828731 818 CpG island CpG island 15178
Cpgi15179 4 139830165 to 139830328 163 CpG island CpG island 15179
Cpgi15180 4 139831253 to 139832129 876 CpG island CpG island 15180
Cpgi15181 4 139832432 to 139833690 1258 CpG island CpG island 15181
Tssr44233 4 139832920 to 139832952 32 - TSS region transcription start site region 44233
Gm46873 4 139833061 to 139852920 19859 + lncRNA gene predicted gene, 46873
Tssr44234 4 139833524 to 139833535 11 - TSS region transcription start site region 44234
Tssr44235 4 139833565 to 139833577 12 - TSS region transcription start site region 44235
Tssr44236 4 139868651 to 139868652 1 - TSS region transcription start site region 44236
Tssr39961 4 139908021 to 139908061 40 + TSS region transcription start site region 39961
Gm1667 4 139910488 to 139912133 1645 + lincRNA gene predicted gene 1667
Gm13028 4 139923349 to 139933170 9821 + lincRNA gene predicted gene 13028
Tssr39962 4 139923455 to 139923459 4 + TSS region transcription start site region 39962
4933427I22Rik 4 139926111 to 139943519 17408 - lincRNA gene RIKEN cDNA 4933427I22 gene
Tssr39963 4 139942666 to 139942691 25 + TSS region transcription start site region 39963
Cpgi15182 4 139950520 to 139950716 196 CpG island CpG island 15182
Klhdc7a 4 139962173 to 139968026 5853 - protein coding gene kelch domain containing 7A
Cpgi15183 4 139965495 to 139965848 353 CpG island CpG island 15183
Tssr44237 4 139967115 to 139967133 18 - TSS region transcription start site region 44237
Tssr44238 4 139967147 to 139967161 14 - TSS region transcription start site region 44238
Mir2139 4 139967526 to 139967620 94 - miRNA gene microRNA 2139
Tssr44239 4 139967583 to 139967618 35 - TSS region transcription start site region 44239
Tssr44240 4 139967619 to 139967630 11 - TSS region transcription start site region 44240
Tssr44241 4 139994017 to 139994019 2 - TSS region transcription start site region 44241
Cpgi15184 4 140004598 to 140004877 279 CpG island CpG island 15184
Igsf21 4 140026846 to 140246784 219938 - protein coding gene immunoglobulin superfamily, member 21
Cpgi15185 4 140028060 to 140028287 227 CpG island CpG island 15185
Cpgi15186 4 140034329 to 140034818 489 CpG island CpG island 15186
Tssr44242 4 140037729 to 140037741 12 - TSS region transcription start site region 44242
Tssr39964 4 140038351 to 140038361 10 + TSS region transcription start site region 39964
Cpgi15187 4 140103257 to 140103688 431 CpG island CpG island 15187
Tssr44243 4 140106253 to 140106286 33 - TSS region transcription start site region 44243
Cpgi15188 4 140109184 to 140109546 362 CpG island CpG island 15188
Tssr1359 4 140131834 to 140131846 12 + TSS region transcription start site region 1359
Tssr39965 4 140131854 to 140131862 8 + TSS region transcription start site region 39965
Tssr39966 4 140131866 to 140131881 15 + TSS region transcription start site region 39966
Gm13027 4 140131877 to 140133351 1474 + antisense lncRNA gene predicted gene 13027
Gm13029 4 140142873 to 140144633 1760 + antisense lncRNA gene predicted gene 13029
Gm33542 4 140218487 to 140222459 3972 + lncRNA gene predicted gene, 33542
Tssr44244 4 140236823 to 140236837 14 - TSS region transcription start site region 44244
Cpgi15189 4 140243409 to 140243632 223 CpG island CpG island 15189
Cpgi15190 4 140244004 to 140244829 825 CpG island CpG island 15190
Cpgi15191 4 140245818 to 140247480 1662 CpG island CpG island 15191
Tssr44245 4 140246751 to 140246793 42 - TSS region transcription start site region 44245
Tssr44246 4 140246794 to 140246824 30 - TSS region transcription start site region 44246
Tssr44247 4 140246918 to 140246946 28 - TSS region transcription start site region 44247
Gm9867 4 140320656 to 140323302 2646 - lncRNA gene predicted gene 9867
Gm33895 4 140323445 to 140330523 7078 + lncRNA gene predicted gene, 33895
Gm34074 4 140355406 to 140361939 6533 + lncRNA gene predicted gene, 34074
Gm13016 4 140380630 to 140385574 4944 + lincRNA gene predicted gene 13016
Gm13017 4 140391148 to 140396604 5456 + lincRNA gene predicted gene 13017
Tssr39967 4 140395748 to 140395772 24 + TSS region transcription start site region 39967
Gm13021 4 140422553 to 140431931 9378 + lincRNA gene predicted gene 13021
Tssr39968 4 140426379 to 140426425 46 + TSS region transcription start site region 39968
Gm13026 4 140437963 to 140461291 23328 + lincRNA gene predicted gene 13026
Arhgef10l 4 140514485 to 140665905 151420 - protein coding gene Rho guanine nucleotide exchange factor (GEF) 10-like
Tssr44248 4 140519828 to 140519839 11 - TSS region transcription start site region 44248
Cpgi15192 4 140581429 to 140581759 330 CpG island CpG island 15192
Tssr44249 4 140581500 to 140581529 29 - TSS region transcription start site region 44249
Tssr44250 4 140581532 to 140581558 26 - TSS region transcription start site region 44250
Tssr44251 4 140581747 to 140581773 26 - TSS region transcription start site region 44251
Tssr44252 4 140581774 to 140581795 21 - TSS region transcription start site region 44252
Tssr44253 4 140581809 to 140581820 11 - TSS region transcription start site region 44253
Tssr44254 4 140581917 to 140581957 40 - TSS region transcription start site region 44254
Tssr44255 4 140587841 to 140587858 17 - TSS region transcription start site region 44255
Tssr44256 4 140587933 to 140587949 16 - TSS region transcription start site region 44256
Gm42335 4 140605107 to 140606567 1460 + lncRNA gene predicted gene, 42335
Tssr44257 4 140610571 to 140610602 31 - TSS region transcription start site region 44257
Tssr44258 4 140617062 to 140617084 22 - TSS region transcription start site region 44258
Tssr44259 4 140620626 to 140620650 24 - TSS region transcription start site region 44259
Tssr44260 4 140620654 to 140620684 30 - TSS region transcription start site region 44260
Cpgi15193 4 140648187 to 140649296 1109 CpG island CpG island 15193
Tssr44261 4 140648716 to 140648729 13 - TSS region transcription start site region 44261
Tssr44262 4 140648736 to 140648781 45 - TSS region transcription start site region 44262
Tssr44263 4 140648823 to 140648836 13 - TSS region transcription start site region 44263
Tssr44264 4 140653952 to 140653998 46 - TSS region transcription start site region 44264
Tssr44265 4 140659533 to 140659544 11 - TSS region transcription start site region 44265
Tssr44266 4 140661296 to 140661306 10 - TSS region transcription start site region 44266
Tssr44267 4 140665854 to 140665867 13 - TSS region transcription start site region 44267
Tssr44268 4 140665874 to 140665886 12 - TSS region transcription start site region 44268
Tssr44269 4 140665891 to 140665913 22 - TSS region transcription start site region 44269
Gm13025 4 140679753 to 140684617 4864 + lincRNA gene predicted gene 13025
Tssr39969 4 140691301 to 140691305 4 + TSS region transcription start site region 39969
Gm23045 4 140692697 to 140692792 95 + miRNA gene predicted gene, 23045
Cpgi15194 4 140699513 to 140699979 466 CpG island CpG island 15194
Tssr44270 4 140699643 to 140699650 7 - TSS region transcription start site region 44270
Tssr44271 4 140699665 to 140699683 18 - TSS region transcription start site region 44271
Tssr44272 4 140699799 to 140699823 24 - TSS region transcription start site region 44272
Tssr39970 4 140699866 to 140699882 16 + TSS region transcription start site region 39970
Tssr39971 4 140699935 to 140699955 20 + TSS region transcription start site region 39971
Tssr39972 4 140699964 to 140699975 11 + TSS region transcription start site region 39972
Tssr39973 4 140699986 to 140699998 12 + TSS region transcription start site region 39973
Tssr39974 4 140700335 to 140700346 11 + TSS region transcription start site region 39974
Tssr39975 4 140700471 to 140700485 14 + TSS region transcription start site region 39975
Tssr39976 4 140700487 to 140700529 42 + TSS region transcription start site region 39976
Tssr39977 4 140700602 to 140700613 11 + TSS region transcription start site region 39977
Cpgi15195 4 140701065 to 140703374 2309 CpG island CpG island 15195
Tssr44273 4 140701069 to 140701089 20 - TSS region transcription start site region 44273
Tssr39978 4 140701426 to 140701437 11 + TSS region transcription start site region 39978
Tssr39979 4 140701447 to 140701463 16 + TSS region transcription start site region 39979
Tssr39980 4 140701466 to 140701509 43 + TSS region transcription start site region 39980
Rcc2 4 140701473 to 140723220 21747 + protein coding gene regulator of chromosome condensation 2
Tssr39981 4 140701510 to 140701521 11 + TSS region transcription start site region 39981
Tssr39982 4 140701522 to 140701548 26 + TSS region transcription start site region 39982
Tssr39983 4 140701608 to 140701619 11 + TSS region transcription start site region 39983
Tssr39984 4 140701833 to 140701839 6 + TSS region transcription start site region 39984
Tssr39985 4 140701895 to 140701922 27 + TSS region transcription start site region 39985
Tssr39986 4 140701936 to 140701962 26 + TSS region transcription start site region 39986
Tssr39987 4 140702081 to 140702150 69 + TSS region transcription start site region 39987
Tssr39988 4 140702177 to 140702198 21 + TSS region transcription start site region 39988
Tssr39989 4 140702216 to 140702238 22 + TSS region transcription start site region 39989
Tssr44274 4 140702398 to 140702448 50 - TSS region transcription start site region 44274
Tssr44275 4 140703666 to 140703675 9 - TSS region transcription start site region 44275
Tssr39990 4 140712780 to 140712782 2 + TSS region transcription start site region 39990
Tssr39991 4 140714294 to 140714305 11 + TSS region transcription start site region 39991
Tssr39992 4 140714318 to 140714357 39 + TSS region transcription start site region 39992
Gm25951 4 140717043 to 140717106 63 + miRNA gene predicted gene, 25951
Tssr39993 4 140720540 to 140720567 27 + TSS region transcription start site region 39993
Tssr39994 4 140721168 to 140721193 25 + TSS region transcription start site region 39994
Padi6 4 140727355 to 140742643 15288 - protein coding gene peptidyl arginine deiminase, type VI
D4Mit64 4 140740705 to 140740892 187 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 64
W6q13 4 140740892 to 89063832 -51677060 QTL weight 6 weeks QTL 13
W10q10 4 140740892 to 89063832 -51677060 QTL weight 10 weeks QTL 10
W3q17 4 140740892 to 89063832 -51677060 QTL weight 3 weeks QTL 17
Lvrq8 4 140740892 to 89063832 -51677060 QTL liver weight QTL 8
Tssr44276 4 140742639 to 140742644 5 - TSS region transcription start site region 44276
Padi4 4 140745865 to 140774236 28371 - protein coding gene peptidyl arginine deiminase, type IV
Cpgi15196 4 140750370 to 140750733 363 CpG island CpG island 15196
Tssr1360 4 140750514 to 140750521 7 - TSS region transcription start site region 1360
Tssr44277 4 140750546 to 140750563 17 - TSS region transcription start site region 44277
Tssr44278 4 140750569 to 140750587 18 - TSS region transcription start site region 44278
Tssr44279 4 140750602 to 140750618 16 - TSS region transcription start site region 44279
Tssr44280 4 140774196 to 140774212 16 - TSS region transcription start site region 44280
Padi3 4 140785369 to 140810648 25279 - protein coding gene peptidyl arginine deiminase, type III
Tssr44281 4 140810646 to 140810649 3 - TSS region transcription start site region 44281
Gm13032 4 140810993 to 140817511 6518 + lncRNA gene predicted gene 13032
Padi1 4 140812983 to 140845778 32795 - protein coding gene peptidyl arginine deiminase, type I
Tssr44282 4 140814138 to 140814168 30 - TSS region transcription start site region 44282
Cpgi15197 4 140814600 to 140814933 333 CpG island CpG island 15197
Tssr44283 4 140826544 to 140826590 46 - TSS region transcription start site region 44283
Tssr44284 4 140835735 to 140835749 14 - TSS region transcription start site region 44284
Tssr44285 4 140845770 to 140845785 15 - TSS region transcription start site region 44285
Cpgi15198 4 140869066 to 140869541 475 CpG island CpG island 15198
4930515B02Rik 4 140872693 to 140878055 5362 + lincRNA gene RIKEN cDNA 4930515B02 gene
D4Mit179 4 140879468 to 140879592 124 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 179
Cpgi15199 4 140906210 to 140906638 428 CpG island CpG island 15199
Tssr39995 4 140906335 to 140906353 18 + TSS region transcription start site region 39995
Padi2 4 140906344 to 140952586 46242 + protein coding gene peptidyl arginine deiminase, type II
Tssr39996 4 140906364 to 140906382 18 + TSS region transcription start site region 39996
Tssr44286 4 140906778 to 140906785 7 - TSS region transcription start site region 44286
Gm46719 4 140908974 to 140910338 1364 - lncRNA gene predicted gene, 46719
Cpgi15200 4 140910910 to 140911158 248 CpG island CpG island 15200
Gm26226 4 140918684 to 140918799 115 + snRNA gene predicted gene, 26226
Tssr39997 4 140924238 to 140924258 20 + TSS region transcription start site region 39997
Tssr39998 4 140924259 to 140924280 21 + TSS region transcription start site region 39998
Tssr39999 4 140924288 to 140924311 23 + TSS region transcription start site region 39999
Gm34375 4 140927227 to 140932057 4830 - lncRNA gene predicted gene, 34375
Tssr40000 4 140945380 to 140945432 52 + TSS region transcription start site region 40000
Tssr40001 4 140946274 to 140946283 9 + TSS region transcription start site region 40001
Gm13031 4 140947666 to 140957902 10236 - antisense lncRNA gene predicted gene 13031
Tssr40002 4 140950062 to 140950079 17 + TSS region transcription start site region 40002
Tssr44287 4 140957846 to 140957858 12 - TSS region transcription start site region 44287