Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:139345520-140555716

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116 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ccnd3-ps 4 139345300 to 139346180 880 - pseudogene cyclin D3, pseudogene
Cpgi15166 4 139345777 to 139346240 463 CpG island CpG island 15166
Tssr44225 4 139345995 to 139346020 25 - TSS region transcription start site region 44225
Mrto4 4 139347440 to 139352576 5136 - protein coding gene mRNA turnover 4, ribosome maturation factor
Cpgi15167 4 139351929 to 139352865 936 CpG island CpG island 15167
Tssr44226 4 139352299 to 139352313 14 - TSS region transcription start site region 44226
Tssr44227 4 139352317 to 139352346 29 - TSS region transcription start site region 44227
Tssr44228 4 139352505 to 139352527 22 - TSS region transcription start site region 44228
Tssr44229 4 139352538 to 139352586 48 - TSS region transcription start site region 44229
Emc1 4 139352587 to 139378730 26143 + protein coding gene ER membrane protein complex subunit 1
Tssr39940 4 139352589 to 139352621 32 + TSS region transcription start site region 39940
Tssr39941 4 139360105 to 139360108 3 + TSS region transcription start site region 39941
Tssr39942 4 139363565 to 139363575 10 + TSS region transcription start site region 39942
Tssr39943 4 139363592 to 139363622 30 + TSS region transcription start site region 39943
Tssr39944 4 139375818 to 139375836 18 + TSS region transcription start site region 39944
2700016F22Rik 4 139376549 to 139380379 3830 - lincRNA gene RIKEN cDNA 2700016F22 gene
Tssr39945 4 139376706 to 139376712 6 + TSS region transcription start site region 39945
Cpgi15168 4 139380162 to 139381141 979 CpG island CpG island 15168
Tssr44230 4 139380374 to 139380404 30 - TSS region transcription start site region 44230
Tssr39946 4 139380601 to 139380656 55 + TSS region transcription start site region 39946
Tssr39947 4 139380658 to 139380684 26 + TSS region transcription start site region 39947
Ubr4 4 139380659 to 139489533 108874 + protein coding gene ubiquitin protein ligase E3 component n-recognin 4
Tssr39948 4 139390831 to 139390850 19 + TSS region transcription start site region 39948
Tssr39949 4 139399738 to 139399753 15 + TSS region transcription start site region 39949
Cpgi15169 4 139430009 to 139430288 279 CpG island CpG island 15169
n-TVaac1 4 139430506 to 139430577 71 - tRNA gene nuclear encoded tRNA valine 1 (anticodon AAC)
Tssr39950 4 139431068 to 139431075 7 + TSS region transcription start site region 39950
Tssr39951 4 139431086 to 139431107 21 + TSS region transcription start site region 39951
Tssr39952 4 139431118 to 139431129 11 + TSS region transcription start site region 39952
Tssr39953 4 139431130 to 139431141 11 + TSS region transcription start site region 39953
Tssr1357 4 139460261 to 139460279 18 + TSS region transcription start site region 1357
Tssr39954 4 139484911 to 139484932 21 + TSS region transcription start site region 39954
Iffo2 4 139530548 to 139620382 89834 + protein coding gene intermediate filament family orphan 2
Cpgi15170 4 139556023 to 139556265 242 CpG island CpG island 15170
Cpgi15171 4 139573686 to 139575985 2299 CpG island CpG island 15171
Tssr39955 4 139574644 to 139574690 46 + TSS region transcription start site region 39955
Tssr39956 4 139574697 to 139574725 28 + TSS region transcription start site region 39956
Gm25571 4 139588876 to 139588977 101 - miRNA gene predicted gene, 25571
Tssr39957 4 139592985 to 139592990 5 + TSS region transcription start site region 39957
Tssr44231 4 139599121 to 139599145 24 - TSS region transcription start site region 44231
Gm21969 4 139603186 to 139662691 59505 + protein coding gene predicted gene 21969
Cpgi15172 4 139614832 to 139615079 247 CpG island CpG island 15172
Cpgi15173 4 139616334 to 139616667 333 CpG island CpG island 15173
Tssr44232 4 139622625 to 139622675 50 - TSS region transcription start site region 44232
Tssr39958 4 139622842 to 139622902 60 + TSS region transcription start site region 39958
Panc1 4 139622871 to 150009023 10386152 heritable phenotypic marker pancreas protein 1
Aldh4a1 4 139622871 to 139649691 26820 + protein coding gene aldehyde dehydrogenase 4 family, member A1
Pphc2 4 139622871 to 150009023 10386152 heritable phenotypic marker polyunsaturated fat induced postprandial hypercholesterolemia
Cpgi15174 4 139622967 to 139623633 666 CpG island CpG island 15174
Tssr39959 4 139623089 to 139623134 45 + TSS region transcription start site region 39959
Tssr39960 4 139629399 to 139629407 8 + TSS region transcription start site region 39960
Mir7020 4 139644042 to 139644111 69 + miRNA gene microRNA 7020
Tas1r2 4 139653538 to 139670280 16742 + protein coding gene taste receptor, type 1, member 2
Cpgi15175 4 139669027 to 139669631 604 CpG island CpG island 15175
Gm42334 4 139734957 to 139735657 700 + lncRNA gene predicted gene, 42334
Pax7 4 139737059 to 139833026 95967 - protein coding gene paired box 7
Cpgi15176 4 139821095 to 139822331 1236 CpG island CpG island 15176
Tssr1358 4 139821644 to 139821645 1 + TSS region transcription start site region 1358
Cpgi15177 4 139823344 to 139824336 992 CpG island CpG island 15177
Cpgi15178 4 139827913 to 139828731 818 CpG island CpG island 15178
Cpgi15179 4 139830165 to 139830328 163 CpG island CpG island 15179
Cpgi15180 4 139831253 to 139832129 876 CpG island CpG island 15180
Cpgi15181 4 139832432 to 139833690 1258 CpG island CpG island 15181
Tssr44233 4 139832920 to 139832952 32 - TSS region transcription start site region 44233
Gm46873 4 139833061 to 139852920 19859 + lncRNA gene predicted gene, 46873
Tssr44234 4 139833524 to 139833535 11 - TSS region transcription start site region 44234
Tssr44235 4 139833565 to 139833577 12 - TSS region transcription start site region 44235
Tssr44236 4 139868651 to 139868652 1 - TSS region transcription start site region 44236
Tssr39961 4 139908021 to 139908061 40 + TSS region transcription start site region 39961
Gm1667 4 139910488 to 139912133 1645 + lincRNA gene predicted gene 1667
Gm13028 4 139923349 to 139933170 9821 + lincRNA gene predicted gene 13028
Tssr39962 4 139923455 to 139923459 4 + TSS region transcription start site region 39962
4933427I22Rik 4 139926111 to 139943519 17408 - lincRNA gene RIKEN cDNA 4933427I22 gene
Tssr39963 4 139942666 to 139942691 25 + TSS region transcription start site region 39963
Cpgi15182 4 139950520 to 139950716 196 CpG island CpG island 15182
Klhdc7a 4 139962173 to 139968026 5853 - protein coding gene kelch domain containing 7A
Cpgi15183 4 139965495 to 139965848 353 CpG island CpG island 15183
Tssr44237 4 139967115 to 139967133 18 - TSS region transcription start site region 44237
Tssr44238 4 139967147 to 139967161 14 - TSS region transcription start site region 44238
Mir2139 4 139967526 to 139967620 94 - miRNA gene microRNA 2139
Tssr44239 4 139967583 to 139967618 35 - TSS region transcription start site region 44239
Tssr44240 4 139967619 to 139967630 11 - TSS region transcription start site region 44240
Tssr44241 4 139994017 to 139994019 2 - TSS region transcription start site region 44241
Cpgi15184 4 140004598 to 140004877 279 CpG island CpG island 15184
Igsf21 4 140026846 to 140246784 219938 - protein coding gene immunoglobulin superfamily, member 21
Cpgi15185 4 140028060 to 140028287 227 CpG island CpG island 15185
Cpgi15186 4 140034329 to 140034818 489 CpG island CpG island 15186
Tssr44242 4 140037729 to 140037741 12 - TSS region transcription start site region 44242
Tssr39964 4 140038351 to 140038361 10 + TSS region transcription start site region 39964
Cpgi15187 4 140103257 to 140103688 431 CpG island CpG island 15187
Tssr44243 4 140106253 to 140106286 33 - TSS region transcription start site region 44243
Cpgi15188 4 140109184 to 140109546 362 CpG island CpG island 15188
Tssr1359 4 140131834 to 140131846 12 + TSS region transcription start site region 1359
Tssr39965 4 140131854 to 140131862 8 + TSS region transcription start site region 39965
Tssr39966 4 140131866 to 140131881 15 + TSS region transcription start site region 39966
Gm13027 4 140131877 to 140133351 1474 + antisense lncRNA gene predicted gene 13027
Gm13029 4 140142873 to 140144633 1760 + antisense lncRNA gene predicted gene 13029
Gm33542 4 140218487 to 140222459 3972 + lncRNA gene predicted gene, 33542
Tssr44244 4 140236823 to 140236837 14 - TSS region transcription start site region 44244
Cpgi15189 4 140243409 to 140243632 223 CpG island CpG island 15189
Cpgi15190 4 140244004 to 140244829 825 CpG island CpG island 15190
Cpgi15191 4 140245818 to 140247480 1662 CpG island CpG island 15191
Tssr44245 4 140246751 to 140246793 42 - TSS region transcription start site region 44245
Tssr44246 4 140246794 to 140246824 30 - TSS region transcription start site region 44246
Tssr44247 4 140246918 to 140246946 28 - TSS region transcription start site region 44247
Gm9867 4 140320656 to 140323302 2646 - lncRNA gene predicted gene 9867
Gm33895 4 140323445 to 140330523 7078 + lncRNA gene predicted gene, 33895
Gm34074 4 140355406 to 140361939 6533 + lncRNA gene predicted gene, 34074
Gm13016 4 140380630 to 140385574 4944 + lincRNA gene predicted gene 13016
Gm13017 4 140391148 to 140396604 5456 + lincRNA gene predicted gene 13017
Tssr39967 4 140395748 to 140395772 24 + TSS region transcription start site region 39967
Gm13021 4 140422553 to 140431931 9378 + lincRNA gene predicted gene 13021
Tssr39968 4 140426379 to 140426425 46 + TSS region transcription start site region 39968
Gm13026 4 140437963 to 140461291 23328 + lincRNA gene predicted gene 13026
Arhgef10l 4 140514485 to 140665905 151420 - protein coding gene Rho guanine nucleotide exchange factor (GEF) 10-like
Tssr44248 4 140519828 to 140519839 11 - TSS region transcription start site region 44248