Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:139302985-139882990

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83 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pqlc2 4 139294029 to 139310708 16679 - protein coding gene PQ loop repeat containing 2
Cpgi15163 4 139310141 to 139311756 1615 CpG island CpG island 15163
Tssr44223 4 139310646 to 139310664 18 - TSS region transcription start site region 44223
Tssr44224 4 139310665 to 139310702 37 - TSS region transcription start site region 44224
Tssr39935 4 139310732 to 139310793 61 + TSS region transcription start site region 39935
Akr7a5 4 139310744 to 139318426 7682 + protein coding gene aldo-keto reductase family 7, member A5 (aflatoxin aldehyde reductase)
Cpgi15164 4 139336880 to 139337306 426 CpG island CpG island 15164
Tssr39936 4 139338092 to 139338103 11 + TSS region transcription start site region 39936
Tssr39937 4 139338132 to 139338138 6 + TSS region transcription start site region 39937
Cpgi15165 4 139338191 to 139338454 263 CpG island CpG island 15165
Tssr39938 4 139338204 to 139338230 26 + TSS region transcription start site region 39938
Gm25732 4 139338206 to 139338265 59 + miRNA gene predicted gene, 25732
Tssr39939 4 139338282 to 139338301 19 + TSS region transcription start site region 39939
Gm24245 4 139338304 to 139338360 56 + miRNA gene predicted gene, 24245
Gm13019 4 139342183 to 139343333 1150 + pseudogene predicted gene 13019
Ccnd3-ps 4 139345300 to 139346180 880 - pseudogene cyclin D3, pseudogene
Cpgi15166 4 139345777 to 139346240 463 CpG island CpG island 15166
Tssr44225 4 139345995 to 139346020 25 - TSS region transcription start site region 44225
Mrto4 4 139347440 to 139352576 5136 - protein coding gene mRNA turnover 4, ribosome maturation factor
Cpgi15167 4 139351929 to 139352865 936 CpG island CpG island 15167
Tssr44226 4 139352299 to 139352313 14 - TSS region transcription start site region 44226
Tssr44227 4 139352317 to 139352346 29 - TSS region transcription start site region 44227
Tssr44228 4 139352505 to 139352527 22 - TSS region transcription start site region 44228
Tssr44229 4 139352538 to 139352586 48 - TSS region transcription start site region 44229
Emc1 4 139352587 to 139378730 26143 + protein coding gene ER membrane protein complex subunit 1
Tssr39940 4 139352589 to 139352621 32 + TSS region transcription start site region 39940
Tssr39941 4 139360105 to 139360108 3 + TSS region transcription start site region 39941
Tssr39942 4 139363565 to 139363575 10 + TSS region transcription start site region 39942
Tssr39943 4 139363592 to 139363622 30 + TSS region transcription start site region 39943
Tssr39944 4 139375818 to 139375836 18 + TSS region transcription start site region 39944
2700016F22Rik 4 139376549 to 139380379 3830 - lincRNA gene RIKEN cDNA 2700016F22 gene
Tssr39945 4 139376706 to 139376712 6 + TSS region transcription start site region 39945
Cpgi15168 4 139380162 to 139381141 979 CpG island CpG island 15168
Tssr44230 4 139380374 to 139380404 30 - TSS region transcription start site region 44230
Tssr39946 4 139380601 to 139380656 55 + TSS region transcription start site region 39946
Tssr39947 4 139380658 to 139380684 26 + TSS region transcription start site region 39947
Ubr4 4 139380659 to 139489533 108874 + protein coding gene ubiquitin protein ligase E3 component n-recognin 4
Tssr39948 4 139390831 to 139390850 19 + TSS region transcription start site region 39948
Tssr39949 4 139399738 to 139399753 15 + TSS region transcription start site region 39949
Cpgi15169 4 139430009 to 139430288 279 CpG island CpG island 15169
n-TVaac1 4 139430506 to 139430577 71 - tRNA gene nuclear encoded tRNA valine 1 (anticodon AAC)
Tssr39950 4 139431068 to 139431075 7 + TSS region transcription start site region 39950
Tssr39951 4 139431086 to 139431107 21 + TSS region transcription start site region 39951
Tssr39952 4 139431118 to 139431129 11 + TSS region transcription start site region 39952
Tssr39953 4 139431130 to 139431141 11 + TSS region transcription start site region 39953
Tssr1357 4 139460261 to 139460279 18 + TSS region transcription start site region 1357
Tssr39954 4 139484911 to 139484932 21 + TSS region transcription start site region 39954
Iffo2 4 139530548 to 139620382 89834 + protein coding gene intermediate filament family orphan 2
Cpgi15170 4 139556023 to 139556265 242 CpG island CpG island 15170
Cpgi15171 4 139573686 to 139575985 2299 CpG island CpG island 15171
Tssr39955 4 139574644 to 139574690 46 + TSS region transcription start site region 39955
Tssr39956 4 139574697 to 139574725 28 + TSS region transcription start site region 39956
Gm25571 4 139588876 to 139588977 101 - miRNA gene predicted gene, 25571
Tssr39957 4 139592985 to 139592990 5 + TSS region transcription start site region 39957
Tssr44231 4 139599121 to 139599145 24 - TSS region transcription start site region 44231
Gm21969 4 139603186 to 139662691 59505 + protein coding gene predicted gene 21969
Cpgi15172 4 139614832 to 139615079 247 CpG island CpG island 15172
Cpgi15173 4 139616334 to 139616667 333 CpG island CpG island 15173
Tssr44232 4 139622625 to 139622675 50 - TSS region transcription start site region 44232
Tssr39958 4 139622842 to 139622902 60 + TSS region transcription start site region 39958
Pphc2 4 139622871 to 150009023 10386152 heritable phenotypic marker polyunsaturated fat induced postprandial hypercholesterolemia
Aldh4a1 4 139622871 to 139649691 26820 + protein coding gene aldehyde dehydrogenase 4 family, member A1
Panc1 4 139622871 to 150009023 10386152 heritable phenotypic marker pancreas protein 1
Cpgi15174 4 139622967 to 139623633 666 CpG island CpG island 15174
Tssr39959 4 139623089 to 139623134 45 + TSS region transcription start site region 39959
Tssr39960 4 139629399 to 139629407 8 + TSS region transcription start site region 39960
Mir7020 4 139644042 to 139644111 69 + miRNA gene microRNA 7020
Tas1r2 4 139653538 to 139670280 16742 + protein coding gene taste receptor, type 1, member 2
Cpgi15175 4 139669027 to 139669631 604 CpG island CpG island 15175
Gm42334 4 139734957 to 139735657 700 + lncRNA gene predicted gene, 42334
Pax7 4 139737059 to 139833026 95967 - protein coding gene paired box 7
Cpgi15176 4 139821095 to 139822331 1236 CpG island CpG island 15176
Tssr1358 4 139821644 to 139821645 1 + TSS region transcription start site region 1358
Cpgi15177 4 139823344 to 139824336 992 CpG island CpG island 15177
Cpgi15178 4 139827913 to 139828731 818 CpG island CpG island 15178
Cpgi15179 4 139830165 to 139830328 163 CpG island CpG island 15179
Cpgi15180 4 139831253 to 139832129 876 CpG island CpG island 15180
Cpgi15181 4 139832432 to 139833690 1258 CpG island CpG island 15181
Tssr44233 4 139832920 to 139832952 32 - TSS region transcription start site region 44233
Gm46873 4 139833061 to 139852920 19859 + lncRNA gene predicted gene, 46873
Tssr44234 4 139833524 to 139833535 11 - TSS region transcription start site region 44234
Tssr44235 4 139833565 to 139833577 12 - TSS region transcription start site region 44235
Tssr44236 4 139868651 to 139868652 1 - TSS region transcription start site region 44236