Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:138911108-139225570

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71 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Otud3 4 138895379 to 138913945 18566 - protein coding gene OTU domain containing 3
Cpgi15157 4 138913182 to 138914226 1044 CpG island CpG island 15157
Tssr44193 4 138913915 to 138913983 68 - TSS region transcription start site region 44193
D4Mit283 4 138928280 to 138928426 146 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 283
Gm18097 4 138935213 to 138935714 501 - pseudogene predicted gene, 18097
Gm33011 4 138936447 to 138938608 2161 - lncRNA gene predicted gene, 33011
Tssr44194 4 138938615 to 138938631 16 - TSS region transcription start site region 44194
Gm42333 4 138961910 to 138964681 2771 - lncRNA gene predicted gene, 42333
Tssr39892 4 138967112 to 138967127 15 + TSS region transcription start site region 39892
Rnf186 4 138967112 to 138968360 1248 + protein coding gene ring finger protein 186
Tssr39893 4 138967154 to 138967157 3 + TSS region transcription start site region 39893
Tssr1355 4 138967756 to 138967767 11 - TSS region transcription start site region 1355
Tssr44195 4 138968995 to 138969012 17 - TSS region transcription start site region 44195
Tssr44196 4 138969015 to 138969026 11 - TSS region transcription start site region 44196
Cpgi15158 4 138972745 to 138973642 897 CpG island CpG island 15158
Tssr44197 4 138972805 to 138972834 29 - TSS region transcription start site region 44197
Tssr39894 4 138972885 to 138972920 35 + TSS region transcription start site region 39894
Tmco4 4 138972888 to 139059171 86283 + protein coding gene transmembrane and coiled-coil domains 4
Tssr39895 4 138973241 to 138973255 14 + TSS region transcription start site region 39895
Tssr44198 4 138973549 to 138973565 16 - TSS region transcription start site region 44198
Tssr39896 4 138983701 to 138983723 22 + TSS region transcription start site region 39896
Gm33214 4 139003191 to 139019566 16375 - lncRNA gene predicted gene, 33214
Htr6 4 139061108 to 139075570 14462 - protein coding gene 5-hydroxytryptamine (serotonin) receptor 6
Cpgi15159 4 139073853 to 139076040 2187 CpG island CpG island 15159
Tssr44199 4 139075557 to 139075575 18 - TSS region transcription start site region 44199
Gm45533 4 139075824 to 139076208 384 + antisense lncRNA gene predicted gene 45533
Nbl1 4 139082291 to 139092980 10689 - protein coding gene NBL1, DAN family BMP antagonist
Tssr44200 4 139085567 to 139085600 33 - TSS region transcription start site region 44200
Cpgi15160 4 139091929 to 139093532 1603 CpG island CpG island 15160
Tssr44201 4 139092751 to 139092754 3 - TSS region transcription start site region 44201
Tssr44202 4 139092958 to 139092977 19 - TSS region transcription start site region 44202
Tssr44203 4 139092993 to 139093000 7 - TSS region transcription start site region 44203
Tssr44204 4 139093010 to 139093021 11 - TSS region transcription start site region 44204
Tssr44205 4 139093046 to 139093056 10 - TSS region transcription start site region 44205
Micos10 4 139101814 to 139131113 29299 - protein coding gene mitochondrial contact site and cristae organizing system subunit 10
Tssr44206 4 139109293 to 139109294 1 - TSS region transcription start site region 44206
Cpgi15161 4 139130130 to 139131278 1148 CpG island CpG island 15161
Tssr44207 4 139130234 to 139130277 43 - TSS region transcription start site region 44207
Tssr39897 4 139130335 to 139130357 22 + TSS region transcription start site region 39897
Tssr44208 4 139130733 to 139130861 128 - TSS region transcription start site region 44208
Tssr44209 4 139130985 to 139131021 36 - TSS region transcription start site region 44209
Tssr44210 4 139131029 to 139131056 27 - TSS region transcription start site region 44210
Tssr44211 4 139131058 to 139131061 3 - TSS region transcription start site region 44211
Tssr39898 4 139131116 to 139131163 47 + TSS region transcription start site region 39898
Gm33304 4 139134109 to 139165291 31182 - lncRNA gene predicted gene, 33304
Hspe1-ps4 4 139150269 to 139150314 45 + pseudogene heat shock protein 1 (chaperonin 10), pseudogene 4
Gm16287 4 139175407 to 139180655 5248 - antisense lncRNA gene predicted gene 16287
Tssr44212 4 139177062 to 139177096 34 - TSS region transcription start site region 44212
Tssr44213 4 139186570 to 139186574 4 - TSS region transcription start site region 44213
Tssr39899 4 139188206 to 139188231 25 + TSS region transcription start site region 39899
9530077C14Rik 4 139192233 to 139192679 446 unclassified gene RIKEN cDNA 9530077C14 gene
Cpgi15162 4 139192345 to 139194002 1657 CpG island CpG island 15162
Tssr44214 4 139192455 to 139192468 13 - TSS region transcription start site region 44214
Tssr44215 4 139192614 to 139192637 23 - TSS region transcription start site region 44215
Tssr44216 4 139192641 to 139192658 17 - TSS region transcription start site region 44216
Tssr44217 4 139192664 to 139192718 54 - TSS region transcription start site region 44217
Capzb 4 139192899 to 139291818 98919 + protein coding gene capping protein (actin filament) muscle Z-line, beta
Tssr39900 4 139192917 to 139192941 24 + TSS region transcription start site region 39900
Tssr39901 4 139192942 to 139192960 18 + TSS region transcription start site region 39901
Tssr39902 4 139192966 to 139192994 28 + TSS region transcription start site region 39902
Tssr39903 4 139193234 to 139193252 18 + TSS region transcription start site region 39903
Tssr39904 4 139193279 to 139193286 7 + TSS region transcription start site region 39904
Tssr39905 4 139193309 to 139193330 21 + TSS region transcription start site region 39905
Tssr44218 4 139193996 to 139194000 4 - TSS region transcription start site region 44218
Tssr39906 4 139194086 to 139194133 47 + TSS region transcription start site region 39906
Tssr39907 4 139197737 to 139197739 2 + TSS region transcription start site region 39907
Tssr1356 4 139198302 to 139198329 27 + TSS region transcription start site region 1356
Tssr39908 4 139199265 to 139199295 30 + TSS region transcription start site region 39908
Tssr39909 4 139200497 to 139200505 8 + TSS region transcription start site region 39909
Tssr39910 4 139205200 to 139205208 8 + TSS region transcription start site region 39910
Tssr39911 4 139207453 to 139207459 6 + TSS region transcription start site region 39911