Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:138847112-139088360

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39 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pla2g5 4 138799247 to 138863469 64222 - protein coding gene phospholipase A2, group V
Tssr44191 4 138863453 to 138863491 38 - TSS region transcription start site region 44191
Gm32930 4 138863507 to 138868626 5119 + lncRNA gene predicted gene, 32930
Tssr39889 4 138863552 to 138863577 25 + TSS region transcription start site region 39889
Tssr44192 4 138863601 to 138863605 4 - TSS region transcription start site region 44192
Gm13030 4 138870992 to 138873964 2972 - protein coding gene predicted gene 13030
Pla2g2e 4 138877942 to 138882817 4875 + protein coding gene phospholipase A2, group IIE
Tssr39890 4 138879320 to 138879324 4 + TSS region transcription start site region 39890
Tssr39891 4 138879385 to 138879399 14 + TSS region transcription start site region 39891
Tssr1354 4 138879401 to 138879410 9 + TSS region transcription start site region 1354
Cpgi15156 4 138882274 to 138882480 206 CpG island CpG island 15156
Otud3 4 138895379 to 138913945 18566 - protein coding gene OTU domain containing 3
Cpgi15157 4 138913182 to 138914226 1044 CpG island CpG island 15157
Tssr44193 4 138913915 to 138913983 68 - TSS region transcription start site region 44193
D4Mit283 4 138928280 to 138928426 146 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 283
Gm18097 4 138935213 to 138935714 501 - pseudogene predicted gene, 18097
Gm33011 4 138936447 to 138938608 2161 - lncRNA gene predicted gene, 33011
Tssr44194 4 138938615 to 138938631 16 - TSS region transcription start site region 44194
Gm42333 4 138961910 to 138964681 2771 - lncRNA gene predicted gene, 42333
Tssr39892 4 138967112 to 138967127 15 + TSS region transcription start site region 39892
Rnf186 4 138967112 to 138968360 1248 + protein coding gene ring finger protein 186
Tssr39893 4 138967154 to 138967157 3 + TSS region transcription start site region 39893
Tssr1355 4 138967756 to 138967767 11 - TSS region transcription start site region 1355
Tssr44195 4 138968995 to 138969012 17 - TSS region transcription start site region 44195
Tssr44196 4 138969015 to 138969026 11 - TSS region transcription start site region 44196
Cpgi15158 4 138972745 to 138973642 897 CpG island CpG island 15158
Tssr44197 4 138972805 to 138972834 29 - TSS region transcription start site region 44197
Tssr39894 4 138972885 to 138972920 35 + TSS region transcription start site region 39894
Tmco4 4 138972888 to 139059171 86283 + protein coding gene transmembrane and coiled-coil domains 4
Tssr39895 4 138973241 to 138973255 14 + TSS region transcription start site region 39895
Tssr44198 4 138973549 to 138973565 16 - TSS region transcription start site region 44198
Tssr39896 4 138983701 to 138983723 22 + TSS region transcription start site region 39896
Gm33214 4 139003191 to 139019566 16375 - lncRNA gene predicted gene, 33214
Htr6 4 139061108 to 139075570 14462 - protein coding gene 5-hydroxytryptamine (serotonin) receptor 6
Cpgi15159 4 139073853 to 139076040 2187 CpG island CpG island 15159
Tssr44199 4 139075557 to 139075575 18 - TSS region transcription start site region 44199
Gm45533 4 139075824 to 139076208 384 + antisense lncRNA gene predicted gene 45533
Nbl1 4 139082291 to 139092980 10689 - protein coding gene NBL1, DAN family BMP antagonist
Tssr44200 4 139085567 to 139085600 33 - TSS region transcription start site region 44200