Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:138459251-139179258

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123 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Shm2 4 137148689 to 138615442 1466753 QTL sperm head morphology 2
Camk2n1 4 138455148 to 138460126 4978 + protein coding gene calcium/calmodulin-dependent protein kinase II inhibitor 1
Tssr44170 4 138459919 to 138459932 13 - TSS region transcription start site region 44170
Gm32549 4 138497634 to 138528513 30879 + lncRNA gene predicted gene, 32549
D4Mit188 4 138508652 to 138508790 138 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 188
Cpgi15154 4 138554777 to 138555042 265 CpG island CpG island 15154
Cpgi15155 4 138555472 to 138555861 389 CpG island CpG island 15155
Vwa5b1 4 138565360 to 138635884 70524 - protein coding gene von Willebrand factor A domain containing 5B1
Gm22961 4 138587624 to 138587729 105 - snRNA gene predicted gene, 22961
Elsgp1 4 138615338 to 138615442 104 QTL elevated serum gp70 1
Stheal12 4 138615338 to 138615442 104 QTL soft tissue heal 12
Chlq16 4 138615338 to 138615442 104 QTL circulating hormone level QTL 16
D4Mit170 4 138615338 to 138615442 104 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 170
Ctrcts 4 138615442 to 45709925 -92905517 QTL cataract severity
Tssr44171 4 138623978 to 138623999 21 - TSS region transcription start site region 44171
Tssr44172 4 138624001 to 138624021 20 - TSS region transcription start site region 44172
Tssr39872 4 138630540 to 138630543 3 + TSS region transcription start site region 39872
Gm32662 4 138638978 to 138657636 18658 + lncRNA gene predicted gene, 32662
Tssr39873 4 138648544 to 138648580 36 + TSS region transcription start site region 39873
Gm32770 4 138677510 to 138711737 34227 + lncRNA gene predicted gene, 32770
4930563F15Rik 4 138677767 to 138679000 1233 unclassified gene RIKEN cDNA 4930563F15 gene
Tssr39874 4 138706868 to 138706908 40 + TSS region transcription start site region 39874
Ubxn10 4 138709837 to 138737167 27330 - protein coding gene UBX domain protein 10
Tssr44173 4 138725210 to 138725258 48 - TSS region transcription start site region 44173
Tssr44174 4 138725262 to 138725267 5 - TSS region transcription start site region 44174
Tssr39875 4 138725282 to 138725309 27 + TSS region transcription start site region 39875
Pla2g2c 4 138725325 to 138744575 19250 + protein coding gene phospholipase A2, group IIC
Pla2g2f 4 138750533 to 138757598 7065 - protein coding gene phospholipase A2, group IIF
Tssr44175 4 138757491 to 138757496 5 - TSS region transcription start site region 44175
Tssr44176 4 138757578 to 138757606 28 - TSS region transcription start site region 44176
Gm42332 4 138761374 to 138769700 8326 - lncRNA gene predicted gene, 42332
Tssr44177 4 138770873 to 138770885 12 - TSS region transcription start site region 44177
Tssr44178 4 138770908 to 138770921 13 - TSS region transcription start site region 44178
Gm32871 4 138772493 to 138780240 7747 - lncRNA gene predicted gene, 32871
Pla2g2d 4 138775735 to 138782046 6311 + protein coding gene phospholipase A2, group IID
Tssr39876 4 138775776 to 138775784 8 + TSS region transcription start site region 39876
Tssr39877 4 138775797 to 138775814 17 + TSS region transcription start site region 39877
Pla2g5 4 138799247 to 138863469 64222 - protein coding gene phospholipase A2, group V
Tssr44179 4 138806273 to 138806288 15 - TSS region transcription start site region 44179
Tssr44180 4 138809804 to 138809812 8 - TSS region transcription start site region 44180
Tssr44181 4 138809833 to 138809844 11 - TSS region transcription start site region 44181
Tssr44182 4 138819131 to 138819149 18 - TSS region transcription start site region 44182
Tssr44183 4 138819161 to 138819168 7 - TSS region transcription start site region 44183
Tssr44184 4 138819213 to 138819234 21 - TSS region transcription start site region 44184
Tssr44185 4 138819242 to 138819247 5 - TSS region transcription start site region 44185
Tssr44186 4 138819251 to 138819258 7 - TSS region transcription start site region 44186
Tssr44187 4 138819284 to 138819296 12 - TSS region transcription start site region 44187
Tssr44188 4 138819308 to 138819314 6 - TSS region transcription start site region 44188
Gm25280 4 138827376 to 138827476 100 - snRNA gene predicted gene, 25280
Tssr39878 4 138831774 to 138831780 6 + TSS region transcription start site region 39878
Tssr39879 4 138831857 to 138831868 11 + TSS region transcription start site region 39879
Pla2g2a 4 138831857 to 138835186 3329 + polymorphic pseudogene phospholipase A2, group IIA (platelets, synovial fluid)
Tssr39880 4 138832656 to 138832683 27 + TSS region transcription start site region 39880
Tssr39881 4 138832881 to 138832896 15 + TSS region transcription start site region 39881
Tssr39882 4 138832926 to 138832935 9 + TSS region transcription start site region 39882
Tssr39883 4 138832937 to 138832948 11 + TSS region transcription start site region 39883
Tssr39884 4 138832954 to 138832969 15 + TSS region transcription start site region 39884
Tssr39885 4 138833001 to 138833010 9 + TSS region transcription start site region 39885
Tssr39886 4 138833264 to 138833277 13 + TSS region transcription start site region 39886
Tssr1352 4 138834895 to 138834904 9 + TSS region transcription start site region 1352
Tssr39887 4 138834920 to 138834938 18 + TSS region transcription start site region 39887
Tssr39888 4 138835068 to 138835073 5 + TSS region transcription start site region 39888
Tssr1353 4 138836446 to 138836456 10 - TSS region transcription start site region 1353
Tssr44189 4 138836462 to 138836473 11 - TSS region transcription start site region 44189
Tssr44190 4 138836474 to 138836485 11 - TSS region transcription start site region 44190
Tssr44191 4 138863453 to 138863491 38 - TSS region transcription start site region 44191
Gm32930 4 138863507 to 138868626 5119 + lncRNA gene predicted gene, 32930
Tssr39889 4 138863552 to 138863577 25 + TSS region transcription start site region 39889
Tssr44192 4 138863601 to 138863605 4 - TSS region transcription start site region 44192
Gm13030 4 138870992 to 138873964 2972 - protein coding gene predicted gene 13030
Pla2g2e 4 138877942 to 138882817 4875 + protein coding gene phospholipase A2, group IIE
Tssr39890 4 138879320 to 138879324 4 + TSS region transcription start site region 39890
Tssr39891 4 138879385 to 138879399 14 + TSS region transcription start site region 39891
Tssr1354 4 138879401 to 138879410 9 + TSS region transcription start site region 1354
Cpgi15156 4 138882274 to 138882480 206 CpG island CpG island 15156
Otud3 4 138895379 to 138913945 18566 - protein coding gene OTU domain containing 3
Cpgi15157 4 138913182 to 138914226 1044 CpG island CpG island 15157
Tssr44193 4 138913915 to 138913983 68 - TSS region transcription start site region 44193
D4Mit283 4 138928280 to 138928426 146 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 283
Gm18097 4 138935213 to 138935714 501 - pseudogene predicted gene, 18097
Gm33011 4 138936447 to 138938608 2161 - lncRNA gene predicted gene, 33011
Tssr44194 4 138938615 to 138938631 16 - TSS region transcription start site region 44194
Gm42333 4 138961910 to 138964681 2771 - lncRNA gene predicted gene, 42333
Tssr39892 4 138967112 to 138967127 15 + TSS region transcription start site region 39892
Rnf186 4 138967112 to 138968360 1248 + protein coding gene ring finger protein 186
Tssr39893 4 138967154 to 138967157 3 + TSS region transcription start site region 39893
Tssr1355 4 138967756 to 138967767 11 - TSS region transcription start site region 1355
Tssr44195 4 138968995 to 138969012 17 - TSS region transcription start site region 44195
Tssr44196 4 138969015 to 138969026 11 - TSS region transcription start site region 44196
Cpgi15158 4 138972745 to 138973642 897 CpG island CpG island 15158
Tssr44197 4 138972805 to 138972834 29 - TSS region transcription start site region 44197
Tssr39894 4 138972885 to 138972920 35 + TSS region transcription start site region 39894
Tmco4 4 138972888 to 139059171 86283 + protein coding gene transmembrane and coiled-coil domains 4
Tssr39895 4 138973241 to 138973255 14 + TSS region transcription start site region 39895
Tssr44198 4 138973549 to 138973565 16 - TSS region transcription start site region 44198
Tssr39896 4 138983701 to 138983723 22 + TSS region transcription start site region 39896
Gm33214 4 139003191 to 139019566 16375 - lncRNA gene predicted gene, 33214
Htr6 4 139061108 to 139075570 14462 - protein coding gene 5-hydroxytryptamine (serotonin) receptor 6
Cpgi15159 4 139073853 to 139076040 2187 CpG island CpG island 15159
Tssr44199 4 139075557 to 139075575 18 - TSS region transcription start site region 44199
Gm45533 4 139075824 to 139076208 384 + antisense lncRNA gene predicted gene 45533
Nbl1 4 139082291 to 139092980 10689 - protein coding gene NBL1, DAN family BMP antagonist
Tssr44200 4 139085567 to 139085600 33 - TSS region transcription start site region 44200
Cpgi15160 4 139091929 to 139093532 1603 CpG island CpG island 15160
Tssr44201 4 139092751 to 139092754 3 - TSS region transcription start site region 44201
Tssr44202 4 139092958 to 139092977 19 - TSS region transcription start site region 44202
Tssr44203 4 139092993 to 139093000 7 - TSS region transcription start site region 44203
Tssr44204 4 139093010 to 139093021 11 - TSS region transcription start site region 44204
Tssr44205 4 139093046 to 139093056 10 - TSS region transcription start site region 44205
Micos10 4 139101814 to 139131113 29299 - protein coding gene mitochondrial contact site and cristae organizing system subunit 10
Tssr44206 4 139109293 to 139109294 1 - TSS region transcription start site region 44206
Cpgi15161 4 139130130 to 139131278 1148 CpG island CpG island 15161
Tssr44207 4 139130234 to 139130277 43 - TSS region transcription start site region 44207
Tssr39897 4 139130335 to 139130357 22 + TSS region transcription start site region 39897
Tssr44208 4 139130733 to 139130861 128 - TSS region transcription start site region 44208
Tssr44209 4 139130985 to 139131021 36 - TSS region transcription start site region 44209
Tssr44210 4 139131029 to 139131056 27 - TSS region transcription start site region 44210
Tssr44211 4 139131058 to 139131061 3 - TSS region transcription start site region 44211
Tssr39898 4 139131116 to 139131163 47 + TSS region transcription start site region 39898
Gm33304 4 139134109 to 139165291 31182 - lncRNA gene predicted gene, 33304
Hspe1-ps4 4 139150269 to 139150314 45 + pseudogene heat shock protein 1 (chaperonin 10), pseudogene 4
Gm16287 4 139175407 to 139180655 5248 - antisense lncRNA gene predicted gene 16287
Tssr44212 4 139177062 to 139177096 34 - TSS region transcription start site region 44212