Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:138255360-138945884

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139 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Shm2 4 137148689 to 138615442 1466753 QTL sperm head morphology 2
Sh2d5 4 138250411 to 138260968 10557 + protein coding gene SH2 domain containing 5
Cpgi15146 4 138261808 to 138262941 1133 CpG island CpG island 15146
Tssr39846 4 138262189 to 138262258 69 + TSS region transcription start site region 39846
Kif17 4 138262251 to 138301973 39722 + protein coding gene kinesin family member 17
Tssr1351 4 138262479 to 138262504 25 + TSS region transcription start site region 1351
Cpgi15147 4 138303916 to 138304128 212 CpG island CpG island 15147
Cpgi15148 4 138304242 to 138305323 1081 CpG island CpG island 15148
Tssr39847 4 138304706 to 138304715 9 + TSS region transcription start site region 39847
Tssr39848 4 138304723 to 138304743 20 + TSS region transcription start site region 39848
Ddost 4 138304738 to 138312611 7873 + protein coding gene dolichyl-di-phosphooligosaccharide-protein glycotransferase
Tssr39849 4 138304782 to 138304833 51 + TSS region transcription start site region 39849
Tssr39850 4 138304835 to 138304892 57 + TSS region transcription start site region 39850
Tssr39851 4 138311865 to 138311892 27 + TSS region transcription start site region 39851
Pink1 4 138313409 to 138326296 12887 - protein coding gene PTEN induced putative kinase 1
Mir7019 4 138316132 to 138316200 68 - miRNA gene microRNA 7019
Cpgi15149 4 138325510 to 138326734 1224 CpG island CpG island 15149
Gm27646 4 138325980 to 138326089 109 - miRNA gene predicted gene, 27646
Tssr44159 4 138326234 to 138326305 71 - TSS region transcription start site region 44159
Cda 4 138338424 to 138367992 29568 - protein coding gene cytidine deaminase
Tssr44160 4 138343615 to 138343641 26 - TSS region transcription start site region 44160
Cpgi15150 4 138367721 to 138368192 471 CpG island CpG island 15150
Tssr44161 4 138367881 to 138367892 11 - TSS region transcription start site region 44161
Tssr44162 4 138367952 to 138367965 13 - TSS region transcription start site region 44162
Tssr44163 4 138367966 to 138368008 42 - TSS region transcription start site region 44163
Fam43b 4 138394092 to 138396458 2366 - protein coding gene family with sequence similarity 43, member B
Cpgi15151 4 138394539 to 138396633 2094 CpG island CpG island 15151
AB041806 4 138395198 to 138397714 2516 + antisense lncRNA gene hypothetical protein, MNCb-2457
Tssr44164 4 138396387 to 138396437 50 - TSS region transcription start site region 44164
Tssr44165 4 138396438 to 138396464 26 - TSS region transcription start site region 44165
Tssr39852 4 138425737 to 138425740 3 + TSS region transcription start site region 39852
Rpl38-ps1 4 138425788 to 138426002 214 + pseudogene ribosomal protein L38, pseudogene 1
Cpgi15152 4 138434296 to 138435246 950 CpG island CpG island 15152
Tssr39853 4 138434647 to 138434748 101 + TSS region transcription start site region 39853
Mul1 4 138434671 to 138442265 7594 + protein coding gene mitochondrial ubiquitin ligase activator of NFKB 1
Tssr39854 4 138440571 to 138440574 3 + TSS region transcription start site region 39854
Cpgi15153 4 138453459 to 138456407 2948 CpG island CpG island 15153
Tssr39855 4 138454095 to 138454153 58 + TSS region transcription start site region 39855
Tssr39856 4 138454305 to 138454327 22 + TSS region transcription start site region 39856
Tssr39857 4 138454355 to 138454377 22 + TSS region transcription start site region 39857
Tssr39858 4 138454378 to 138454413 35 + TSS region transcription start site region 39858
Tssr39859 4 138454716 to 138454737 21 + TSS region transcription start site region 39859
Tssr39860 4 138454903 to 138454917 14 + TSS region transcription start site region 39860
Tssr39861 4 138454934 to 138454948 14 + TSS region transcription start site region 39861
Camk2n1 4 138455148 to 138460126 4978 + protein coding gene calcium/calmodulin-dependent protein kinase II inhibitor 1
Tssr39862 4 138456711 to 138456721 10 + TSS region transcription start site region 39862
Tssr39863 4 138456808 to 138456819 11 + TSS region transcription start site region 39863
Tssr44166 4 138456815 to 138456883 68 - TSS region transcription start site region 44166
Tssr39864 4 138456874 to 138456885 11 + TSS region transcription start site region 39864
Tssr39865 4 138457003 to 138457060 57 + TSS region transcription start site region 39865
Tssr44167 4 138457050 to 138457067 17 - TSS region transcription start site region 44167
Tssr44168 4 138457136 to 138457149 13 - TSS region transcription start site region 44168
Tssr44169 4 138457232 to 138457243 11 - TSS region transcription start site region 44169
Tssr39866 4 138457368 to 138457380 12 + TSS region transcription start site region 39866
Tssr39867 4 138457605 to 138457619 14 + TSS region transcription start site region 39867
Tssr39868 4 138457677 to 138457689 12 + TSS region transcription start site region 39868
Tssr39869 4 138457892 to 138457917 25 + TSS region transcription start site region 39869
Tssr39870 4 138457938 to 138457946 8 + TSS region transcription start site region 39870
Tssr39871 4 138457984 to 138458002 18 + TSS region transcription start site region 39871
Tssr44170 4 138459919 to 138459932 13 - TSS region transcription start site region 44170
Gm32549 4 138497634 to 138528513 30879 + lncRNA gene predicted gene, 32549
D4Mit188 4 138508652 to 138508790 138 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 188
Cpgi15154 4 138554777 to 138555042 265 CpG island CpG island 15154
Cpgi15155 4 138555472 to 138555861 389 CpG island CpG island 15155
Vwa5b1 4 138565360 to 138635884 70524 - protein coding gene von Willebrand factor A domain containing 5B1
Gm22961 4 138587624 to 138587729 105 - snRNA gene predicted gene, 22961
Stheal12 4 138615338 to 138615442 104 QTL soft tissue heal 12
Chlq16 4 138615338 to 138615442 104 QTL circulating hormone level QTL 16
D4Mit170 4 138615338 to 138615442 104 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 170
Elsgp1 4 138615338 to 138615442 104 QTL elevated serum gp70 1
Ctrcts 4 138615442 to 45709925 -92905517 QTL cataract severity
Tssr44171 4 138623978 to 138623999 21 - TSS region transcription start site region 44171
Tssr44172 4 138624001 to 138624021 20 - TSS region transcription start site region 44172
Tssr39872 4 138630540 to 138630543 3 + TSS region transcription start site region 39872
Gm32662 4 138638978 to 138657636 18658 + lncRNA gene predicted gene, 32662
Tssr39873 4 138648544 to 138648580 36 + TSS region transcription start site region 39873
Gm32770 4 138677510 to 138711737 34227 + lncRNA gene predicted gene, 32770
4930563F15Rik 4 138677767 to 138679000 1233 unclassified gene RIKEN cDNA 4930563F15 gene
Tssr39874 4 138706868 to 138706908 40 + TSS region transcription start site region 39874
Ubxn10 4 138709837 to 138737167 27330 - protein coding gene UBX domain protein 10
Tssr44173 4 138725210 to 138725258 48 - TSS region transcription start site region 44173
Tssr44174 4 138725262 to 138725267 5 - TSS region transcription start site region 44174
Tssr39875 4 138725282 to 138725309 27 + TSS region transcription start site region 39875
Pla2g2c 4 138725325 to 138744575 19250 + protein coding gene phospholipase A2, group IIC
Pla2g2f 4 138750533 to 138757598 7065 - protein coding gene phospholipase A2, group IIF
Tssr44175 4 138757491 to 138757496 5 - TSS region transcription start site region 44175
Tssr44176 4 138757578 to 138757606 28 - TSS region transcription start site region 44176
Gm42332 4 138761374 to 138769700 8326 - lncRNA gene predicted gene, 42332
Tssr44177 4 138770873 to 138770885 12 - TSS region transcription start site region 44177
Tssr44178 4 138770908 to 138770921 13 - TSS region transcription start site region 44178
Gm32871 4 138772493 to 138780240 7747 - lncRNA gene predicted gene, 32871
Pla2g2d 4 138775735 to 138782046 6311 + protein coding gene phospholipase A2, group IID
Tssr39876 4 138775776 to 138775784 8 + TSS region transcription start site region 39876
Tssr39877 4 138775797 to 138775814 17 + TSS region transcription start site region 39877
Pla2g5 4 138799247 to 138863469 64222 - protein coding gene phospholipase A2, group V
Tssr44179 4 138806273 to 138806288 15 - TSS region transcription start site region 44179
Tssr44180 4 138809804 to 138809812 8 - TSS region transcription start site region 44180
Tssr44181 4 138809833 to 138809844 11 - TSS region transcription start site region 44181
Tssr44182 4 138819131 to 138819149 18 - TSS region transcription start site region 44182
Tssr44183 4 138819161 to 138819168 7 - TSS region transcription start site region 44183
Tssr44184 4 138819213 to 138819234 21 - TSS region transcription start site region 44184
Tssr44185 4 138819242 to 138819247 5 - TSS region transcription start site region 44185
Tssr44186 4 138819251 to 138819258 7 - TSS region transcription start site region 44186
Tssr44187 4 138819284 to 138819296 12 - TSS region transcription start site region 44187
Tssr44188 4 138819308 to 138819314 6 - TSS region transcription start site region 44188
Gm25280 4 138827376 to 138827476 100 - snRNA gene predicted gene, 25280
Tssr39878 4 138831774 to 138831780 6 + TSS region transcription start site region 39878
Pla2g2a 4 138831857 to 138835186 3329 + polymorphic pseudogene phospholipase A2, group IIA (platelets, synovial fluid)
Tssr39879 4 138831857 to 138831868 11 + TSS region transcription start site region 39879
Tssr39880 4 138832656 to 138832683 27 + TSS region transcription start site region 39880
Tssr39881 4 138832881 to 138832896 15 + TSS region transcription start site region 39881
Tssr39882 4 138832926 to 138832935 9 + TSS region transcription start site region 39882
Tssr39883 4 138832937 to 138832948 11 + TSS region transcription start site region 39883
Tssr39884 4 138832954 to 138832969 15 + TSS region transcription start site region 39884
Tssr39885 4 138833001 to 138833010 9 + TSS region transcription start site region 39885
Tssr39886 4 138833264 to 138833277 13 + TSS region transcription start site region 39886
Tssr1352 4 138834895 to 138834904 9 + TSS region transcription start site region 1352
Tssr39887 4 138834920 to 138834938 18 + TSS region transcription start site region 39887
Tssr39888 4 138835068 to 138835073 5 + TSS region transcription start site region 39888
Tssr1353 4 138836446 to 138836456 10 - TSS region transcription start site region 1353
Tssr44189 4 138836462 to 138836473 11 - TSS region transcription start site region 44189
Tssr44190 4 138836474 to 138836485 11 - TSS region transcription start site region 44190
Tssr44191 4 138863453 to 138863491 38 - TSS region transcription start site region 44191
Gm32930 4 138863507 to 138868626 5119 + lncRNA gene predicted gene, 32930
Tssr39889 4 138863552 to 138863577 25 + TSS region transcription start site region 39889
Tssr44192 4 138863601 to 138863605 4 - TSS region transcription start site region 44192
Gm13030 4 138870992 to 138873964 2972 - protein coding gene predicted gene 13030
Pla2g2e 4 138877942 to 138882817 4875 + protein coding gene phospholipase A2, group IIE
Tssr39890 4 138879320 to 138879324 4 + TSS region transcription start site region 39890
Tssr39891 4 138879385 to 138879399 14 + TSS region transcription start site region 39891
Tssr1354 4 138879401 to 138879410 9 + TSS region transcription start site region 1354
Cpgi15156 4 138882274 to 138882480 206 CpG island CpG island 15156
Otud3 4 138895379 to 138913945 18566 - protein coding gene OTU domain containing 3
Cpgi15157 4 138913182 to 138914226 1044 CpG island CpG island 15157
Tssr44193 4 138913915 to 138913983 68 - TSS region transcription start site region 44193
D4Mit283 4 138928280 to 138928426 146 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 283
Gm18097 4 138935213 to 138935714 501 - pseudogene predicted gene, 18097
Gm33011 4 138936447 to 138938608 2161 - lncRNA gene predicted gene, 33011
Tssr44194 4 138938615 to 138938631 16 - TSS region transcription start site region 44194