Gene symbol | Chromo- some |
Coordinates (bp, mm10) | Size (bp) | Strand | Feature Type | Gene name |
---|---|---|---|---|---|---|
Shm2 | 4 | 1466753 | QTL | sperm head morphology 2 | ||
Hp1bp3 | 4 | 28071 | + | protein coding gene | heterochromatin protein 1, binding protein 3 | |
Cpgi15144 | 4 | 1404 | CpG island | CpG island 15144 | ||
Tssr44158 | 4 | 27 | - | TSS region | transcription start site region 44158 | |
Sh2d5 | 4 | 10557 | + | protein coding gene | SH2 domain containing 5 | |
Tssr39844 | 4 | 36 | + | TSS region | transcription start site region 39844 | |
Tssr39845 | 4 | 23 | + | TSS region | transcription start site region 39845 | |
Cpgi15145 | 4 | 189 | CpG island | CpG island 15145 | ||
Cpgi15146 | 4 | 1133 | CpG island | CpG island 15146 | ||
Tssr39846 | 4 | 69 | + | TSS region | transcription start site region 39846 | |
Kif17 | 4 | 39722 | + | protein coding gene | kinesin family member 17 | |
Tssr1351 | 4 | 25 | + | TSS region | transcription start site region 1351 | |
Cpgi15147 | 4 | 212 | CpG island | CpG island 15147 | ||
Cpgi15148 | 4 | 1081 | CpG island | CpG island 15148 | ||
Tssr39847 | 4 | 9 | + | TSS region | transcription start site region 39847 | |
Tssr39848 | 4 | 20 | + | TSS region | transcription start site region 39848 | |
Ddost | 4 | 7873 | + | protein coding gene | dolichyl-di-phosphooligosaccharide-protein glycotransferase | |
Tssr39849 | 4 | 51 | + | TSS region | transcription start site region 39849 | |
Tssr39850 | 4 | 57 | + | TSS region | transcription start site region 39850 | |
Tssr39851 | 4 | 27 | + | TSS region | transcription start site region 39851 | |
Pink1 | 4 | 12887 | - | protein coding gene | PTEN induced putative kinase 1 | |
Mir7019 | 4 | 68 | - | miRNA gene | microRNA 7019 | |
Cpgi15149 | 4 | 1224 | CpG island | CpG island 15149 | ||
Gm27646 | 4 | 109 | - | miRNA gene | predicted gene, 27646 | |
Tssr44159 | 4 | 71 | - | TSS region | transcription start site region 44159 | |
Cda | 4 | 29568 | - | protein coding gene | cytidine deaminase | |
Tssr44160 | 4 | 26 | - | TSS region | transcription start site region 44160 | |
Cpgi15150 | 4 | 471 | CpG island | CpG island 15150 | ||
Tssr44161 | 4 | 11 | - | TSS region | transcription start site region 44161 | |
Tssr44162 | 4 | 13 | - | TSS region | transcription start site region 44162 | |
Tssr44163 | 4 | 42 | - | TSS region | transcription start site region 44163 | |
Fam43b | 4 | 2366 | - | protein coding gene | family with sequence similarity 43, member B | |
Cpgi15151 | 4 | 2094 | CpG island | CpG island 15151 | ||
AB041806 | 4 | 2516 | + | antisense lncRNA gene | hypothetical protein, MNCb-2457 | |
Tssr44164 | 4 | 50 | - | TSS region | transcription start site region 44164 | |
Tssr44165 | 4 | 26 | - | TSS region | transcription start site region 44165 | |
Tssr39852 | 4 | 3 | + | TSS region | transcription start site region 39852 | |
Rpl38-ps1 | 4 | 214 | + | pseudogene | ribosomal protein L38, pseudogene 1 | |
Cpgi15152 | 4 | 950 | CpG island | CpG island 15152 | ||
Tssr39853 | 4 | 101 | + | TSS region | transcription start site region 39853 | |
Mul1 | 4 | 7594 | + | protein coding gene | mitochondrial ubiquitin ligase activator of NFKB 1 | |
Tssr39854 | 4 | 3 | + | TSS region | transcription start site region 39854 | |
Cpgi15153 | 4 | 2948 | CpG island | CpG island 15153 | ||
Tssr39855 | 4 | 58 | + | TSS region | transcription start site region 39855 | |
Tssr39856 | 4 | 22 | + | TSS region | transcription start site region 39856 | |
Tssr39857 | 4 | 22 | + | TSS region | transcription start site region 39857 | |
Tssr39858 | 4 | 35 | + | TSS region | transcription start site region 39858 | |
Tssr39859 | 4 | 21 | + | TSS region | transcription start site region 39859 | |
Tssr39860 | 4 | 14 | + | TSS region | transcription start site region 39860 | |
Tssr39861 | 4 | 14 | + | TSS region | transcription start site region 39861 | |
Camk2n1 | 4 | 4978 | + | protein coding gene | calcium/calmodulin-dependent protein kinase II inhibitor 1 | |
Tssr39862 | 4 | 10 | + | TSS region | transcription start site region 39862 | |
Tssr39863 | 4 | 11 | + | TSS region | transcription start site region 39863 | |
Tssr44166 | 4 | 68 | - | TSS region | transcription start site region 44166 | |
Tssr39864 | 4 | 11 | + | TSS region | transcription start site region 39864 | |
Tssr39865 | 4 | 57 | + | TSS region | transcription start site region 39865 | |
Tssr44167 | 4 | 17 | - | TSS region | transcription start site region 44167 | |
Tssr44168 | 4 | 13 | - | TSS region | transcription start site region 44168 | |
Tssr44169 | 4 | 11 | - | TSS region | transcription start site region 44169 | |
Tssr39866 | 4 | 12 | + | TSS region | transcription start site region 39866 | |
Tssr39867 | 4 | 14 | + | TSS region | transcription start site region 39867 | |
Tssr39868 | 4 | 12 | + | TSS region | transcription start site region 39868 | |
Tssr39869 | 4 | 25 | + | TSS region | transcription start site region 39869 | |
Tssr39870 | 4 | 8 | + | TSS region | transcription start site region 39870 | |
Tssr39871 | 4 | 18 | + | TSS region | transcription start site region 39871 | |
Tssr44170 | 4 | 13 | - | TSS region | transcription start site region 44170 | |
Gm32549 | 4 | 30879 | + | lncRNA gene | predicted gene, 32549 | |
D4Mit188 | 4 | 138 | DNA segment | DNA segment, Chr 4, Massachusetts Institute of Technology 188 | ||
Cpgi15154 | 4 | 265 | CpG island | CpG island 15154 | ||
Cpgi15155 | 4 | 389 | CpG island | CpG island 15155 | ||
Vwa5b1 | 4 | 70524 | - | protein coding gene | von Willebrand factor A domain containing 5B1 | |
Gm22961 | 4 | 105 | - | snRNA gene | predicted gene, 22961 | |
Stheal12 | 4 | 104 | QTL | soft tissue heal 12 | ||
D4Mit170 | 4 | 104 | DNA segment | DNA segment, Chr 4, Massachusetts Institute of Technology 170 | ||
Chlq16 | 4 | 104 | QTL | circulating hormone level QTL 16 | ||
Elsgp1 | 4 | 104 | QTL | elevated serum gp70 1 | ||
Ctrcts | 4 | -92905517 | QTL | cataract severity | ||
Tssr44171 | 4 | 21 | - | TSS region | transcription start site region 44171 | |
Tssr44172 | 4 | 20 | - | TSS region | transcription start site region 44172 | |
Tssr39872 | 4 | 3 | + | TSS region | transcription start site region 39872 | |
Gm32662 | 4 | 18658 | + | lncRNA gene | predicted gene, 32662 | |
Tssr39873 | 4 | 36 | + | TSS region | transcription start site region 39873 | |
Gm32770 | 4 | 34227 | + | lncRNA gene | predicted gene, 32770 | |
4930563F15Rik | 4 | 1233 | unclassified gene | RIKEN cDNA 4930563F15 gene | ||
Tssr39874 | 4 | 40 | + | TSS region | transcription start site region 39874 | |
Ubxn10 | 4 | 27330 | - | protein coding gene | UBX domain protein 10 | |
Tssr44173 | 4 | 48 | - | TSS region | transcription start site region 44173 | |
Tssr44174 | 4 | 5 | - | TSS region | transcription start site region 44174 | |
Tssr39875 | 4 | 27 | + | TSS region | transcription start site region 39875 | |
Pla2g2c | 4 | 19250 | + | protein coding gene | phospholipase A2, group IIC | |
Pla2g2f | 4 | 7065 | - | protein coding gene | phospholipase A2, group IIF | |
Tssr44175 | 4 | 5 | - | TSS region | transcription start site region 44175 | |
Tssr44176 | 4 | 28 | - | TSS region | transcription start site region 44176 | |
Gm42332 | 4 | 8326 | - | lncRNA gene | predicted gene, 42332 | |
Tssr44177 | 4 | 12 | - | TSS region | transcription start site region 44177 | |
Tssr44178 | 4 | 13 | - | TSS region | transcription start site region 44178 | |
Gm32871 | 4 | 7747 | - | lncRNA gene | predicted gene, 32871 | |
Pla2g2d | 4 | 6311 | + | protein coding gene | phospholipase A2, group IID | |
Tssr39876 | 4 | 8 | + | TSS region | transcription start site region 39876 | |
Tssr39877 | 4 | 17 | + | TSS region | transcription start site region 39877 | |
Pla2g5 | 4 | 64222 | - | protein coding gene | phospholipase A2, group V | |
Tssr44179 | 4 | 15 | - | TSS region | transcription start site region 44179 | |
Tssr44180 | 4 | 8 | - | TSS region | transcription start site region 44180 | |
Tssr44181 | 4 | 11 | - | TSS region | transcription start site region 44181 | |
Tssr44182 | 4 | 18 | - | TSS region | transcription start site region 44182 | |
Tssr44183 | 4 | 7 | - | TSS region | transcription start site region 44183 | |
Tssr44184 | 4 | 21 | - | TSS region | transcription start site region 44184 | |
Tssr44185 | 4 | 5 | - | TSS region | transcription start site region 44185 | |
Tssr44186 | 4 | 7 | - | TSS region | transcription start site region 44186 | |
Tssr44187 | 4 | 12 | - | TSS region | transcription start site region 44187 | |
Tssr44188 | 4 | 6 | - | TSS region | transcription start site region 44188 | |
Gm25280 | 4 | 100 | - | snRNA gene | predicted gene, 25280 | |
Tssr39878 | 4 | 6 | + | TSS region | transcription start site region 39878 | |
Tssr39879 | 4 | 11 | + | TSS region | transcription start site region 39879 | |
Pla2g2a | 4 | 3329 | + | polymorphic pseudogene | phospholipase A2, group IIA (platelets, synovial fluid) | |
Tssr39880 | 4 | 27 | + | TSS region | transcription start site region 39880 | |
Tssr39881 | 4 | 15 | + | TSS region | transcription start site region 39881 | |
Tssr39882 | 4 | 9 | + | TSS region | transcription start site region 39882 | |
Tssr39883 | 4 | 11 | + | TSS region | transcription start site region 39883 | |
Tssr39884 | 4 | 15 | + | TSS region | transcription start site region 39884 | |
Tssr39885 | 4 | 9 | + | TSS region | transcription start site region 39885 | |
Tssr39886 | 4 | 13 | + | TSS region | transcription start site region 39886 | |
Tssr1352 | 4 | 9 | + | TSS region | transcription start site region 1352 | |
Tssr39887 | 4 | 18 | + | TSS region | transcription start site region 39887 | |
Tssr39888 | 4 | 5 | + | TSS region | transcription start site region 39888 | |
Tssr1353 | 4 | 10 | - | TSS region | transcription start site region 1353 | |
Tssr44189 | 4 | 11 | - | TSS region | transcription start site region 44189 | |
Tssr44190 | 4 | 11 | - | TSS region | transcription start site region 44190 | |
Tssr44191 | 4 | 38 | - | TSS region | transcription start site region 44191 | |
Gm32930 | 4 | 5119 | + | lncRNA gene | predicted gene, 32930 | |
Tssr39889 | 4 | 25 | + | TSS region | transcription start site region 39889 | |
Tssr44192 | 4 | 4 | - | TSS region | transcription start site region 44192 | |
Gm13030 | 4 | 2972 | - | protein coding gene | predicted gene 13030 | |
Pla2g2e | 4 | 4875 | + | protein coding gene | phospholipase A2, group IIE | |
Tssr39890 | 4 | 4 | + | TSS region | transcription start site region 39890 | |
Tssr39891 | 4 | 14 | + | TSS region | transcription start site region 39891 | |
Tssr1354 | 4 | 9 | + | TSS region | transcription start site region 1354 | |
Cpgi15156 | 4 | 206 | CpG island | CpG island 15156 | ||
Otud3 | 4 | 18566 | - | protein coding gene | OTU domain containing 3 | |
Cpgi15157 | 4 | 1044 | CpG island | CpG island 15157 | ||
Tssr44193 | 4 | 68 | - | TSS region | transcription start site region 44193 | |
D4Mit283 | 4 | 146 | DNA segment | DNA segment, Chr 4, Massachusetts Institute of Technology 283 | ||
Gm18097 | 4 | 501 | - | pseudogene | predicted gene, 18097 | |
Gm33011 | 4 | 2161 | - | lncRNA gene | predicted gene, 33011 | |
Tssr44194 | 4 | 16 | - | TSS region | transcription start site region 44194 | |
Gm42333 | 4 | 2771 | - | lncRNA gene | predicted gene, 42333 | |
Tssr39892 | 4 | 15 | + | TSS region | transcription start site region 39892 | |
Rnf186 | 4 | 1248 | + | protein coding gene | ring finger protein 186 | |
Tssr39893 | 4 | 3 | + | TSS region | transcription start site region 39893 | |
Tssr1355 | 4 | 11 | - | TSS region | transcription start site region 1355 | |
Tssr44195 | 4 | 17 | - | TSS region | transcription start site region 44195 | |
Tssr44196 | 4 | 11 | - | TSS region | transcription start site region 44196 | |
Cpgi15158 | 4 | 897 | CpG island | CpG island 15158 | ||
Tssr44197 | 4 | 29 | - | TSS region | transcription start site region 44197 | |
Tssr39894 | 4 | 35 | + | TSS region | transcription start site region 39894 | |
Tmco4 | 4 | 86283 | + | protein coding gene | transmembrane and coiled-coil domains 4 | |
Tssr39895 | 4 | 14 | + | TSS region | transcription start site region 39895 | |
Tssr44198 | 4 | 16 | - | TSS region | transcription start site region 44198 | |
Tssr39896 | 4 | 22 | + | TSS region | transcription start site region 39896 | |
Gm33214 | 4 | 16375 | - | lncRNA gene | predicted gene, 33214 | |
Htr6 | 4 | 14462 | - | protein coding gene | 5-hydroxytryptamine (serotonin) receptor 6 | |
Cpgi15159 | 4 | 2187 | CpG island | CpG island 15159 | ||
Tssr44199 | 4 | 18 | - | TSS region | transcription start site region 44199 | |
Gm45533 | 4 | 384 | + | antisense lncRNA gene | predicted gene 45533 | |
Nbl1 | 4 | 10689 | - | protein coding gene | NBL1, DAN family BMP antagonist | |
Tssr44200 | 4 | 33 | - | TSS region | transcription start site region 44200 | |
Cpgi15160 | 4 | 1603 | CpG island | CpG island 15160 | ||
Tssr44201 | 4 | 3 | - | TSS region | transcription start site region 44201 | |
Tssr44202 | 4 | 19 | - | TSS region | transcription start site region 44202 | |
Tssr44203 | 4 | 7 | - | TSS region | transcription start site region 44203 | |
Tssr44204 | 4 | 11 | - | TSS region | transcription start site region 44204 | |
Tssr44205 | 4 | 10 | - | TSS region | transcription start site region 44205 | |
Micos10 | 4 | 29299 | - | protein coding gene | mitochondrial contact site and cristae organizing system subunit 10 | |
Tssr44206 | 4 | 1 | - | TSS region | transcription start site region 44206 | |
Cpgi15161 | 4 | 1148 | CpG island | CpG island 15161 | ||
Tssr44207 | 4 | 43 | - | TSS region | transcription start site region 44207 | |
Tssr39897 | 4 | 22 | + | TSS region | transcription start site region 39897 | |
Tssr44208 | 4 | 128 | - | TSS region | transcription start site region 44208 | |
Tssr44209 | 4 | 36 | - | TSS region | transcription start site region 44209 | |
Tssr44210 | 4 | 27 | - | TSS region | transcription start site region 44210 | |
Tssr44211 | 4 | 3 | - | TSS region | transcription start site region 44211 | |
Tssr39898 | 4 | 47 | + | TSS region | transcription start site region 39898 | |
Gm33304 | 4 | 31182 | - | lncRNA gene | predicted gene, 33304 | |
Hspe1-ps4 | 4 | 45 | + | pseudogene | heat shock protein 1 (chaperonin 10), pseudogene 4 | |
Gm16287 | 4 | 5248 | - | antisense lncRNA gene | predicted gene 16287 | |
Tssr44212 | 4 | 34 | - | TSS region | transcription start site region 44212 | |
Tssr44213 | 4 | 4 | - | TSS region | transcription start site region 44213 | |
Tssr39899 | 4 | 25 | + | TSS region | transcription start site region 39899 | |
9530077C14Rik | 4 | 446 | unclassified gene | RIKEN cDNA 9530077C14 gene | ||
Cpgi15162 | 4 | 1657 | CpG island | CpG island 15162 | ||
Tssr44214 | 4 | 13 | - | TSS region | transcription start site region 44214 | |
Tssr44215 | 4 | 23 | - | TSS region | transcription start site region 44215 | |
Tssr44216 | 4 | 17 | - | TSS region | transcription start site region 44216 | |
Tssr44217 | 4 | 54 | - | TSS region | transcription start site region 44217 | |
Capzb | 4 | 98919 | + | protein coding gene | capping protein (actin filament) muscle Z-line, beta | |
Tssr39900 | 4 | 24 | + | TSS region | transcription start site region 39900 | |
Tssr39901 | 4 | 18 | + | TSS region | transcription start site region 39901 | |
Tssr39902 | 4 | 28 | + | TSS region | transcription start site region 39902 | |
Tssr39903 | 4 | 18 | + | TSS region | transcription start site region 39903 | |
Tssr39904 | 4 | 7 | + | TSS region | transcription start site region 39904 |