Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:138143459-138766407

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114 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Shm2 4 137148689 to 138615442 1466753 QTL sperm head morphology 2
Eif4g3 4 137993013 to 138207081 214068 + protein coding gene eukaryotic translation initiation factor 4 gamma, 3
Tssr39828 4 138147415 to 138147420 5 + TSS region transcription start site region 39828
Tssr39829 4 138147430 to 138147452 22 + TSS region transcription start site region 39829
Tssr39830 4 138147467 to 138147468 1 + TSS region transcription start site region 39830
Mir6399 4 138163209 to 138163292 83 + miRNA gene microRNA 6399
Tssr39831 4 138172984 to 138172988 4 + TSS region transcription start site region 39831
Tssr39832 4 138175874 to 138175887 13 + TSS region transcription start site region 39832
Tssr39833 4 138206074 to 138206096 22 + TSS region transcription start site region 39833
Tssr39834 4 138206341 to 138206360 19 + TSS region transcription start site region 39834
2310026L22Rik 4 138215714 to 138216189 475 + lincRNA gene RIKEN cDNA 2310026L22 gene
Cpgi15143 4 138216129 to 138217890 1761 CpG island CpG island 15143
Tssr39835 4 138216299 to 138216324 25 + TSS region transcription start site region 39835
Tssr39836 4 138216411 to 138216464 53 + TSS region transcription start site region 39836
Tssr39837 4 138216465 to 138216503 38 + TSS region transcription start site region 39837
Hp1bp3 4 138216612 to 138244683 28071 + protein coding gene heterochromatin protein 1, binding protein 3
Tssr39838 4 138216624 to 138216650 26 + TSS region transcription start site region 39838
Tssr39839 4 138217120 to 138217203 83 + TSS region transcription start site region 39839
Tssr39840 4 138217235 to 138217310 75 + TSS region transcription start site region 39840
Tssr39841 4 138221574 to 138221629 55 + TSS region transcription start site region 39841
Tssr39842 4 138226049 to 138226050 1 + TSS region transcription start site region 39842
Tssr39843 4 138239599 to 138239618 19 + TSS region transcription start site region 39843
Cpgi15144 4 138249646 to 138251050 1404 CpG island CpG island 15144
Tssr44158 4 138250202 to 138250229 27 - TSS region transcription start site region 44158
Sh2d5 4 138250411 to 138260968 10557 + protein coding gene SH2 domain containing 5
Tssr39844 4 138250425 to 138250461 36 + TSS region transcription start site region 39844
Tssr39845 4 138250462 to 138250485 23 + TSS region transcription start site region 39845
Cpgi15145 4 138251770 to 138251959 189 CpG island CpG island 15145
Cpgi15146 4 138261808 to 138262941 1133 CpG island CpG island 15146
Tssr39846 4 138262189 to 138262258 69 + TSS region transcription start site region 39846
Kif17 4 138262251 to 138301973 39722 + protein coding gene kinesin family member 17
Tssr1351 4 138262479 to 138262504 25 + TSS region transcription start site region 1351
Cpgi15147 4 138303916 to 138304128 212 CpG island CpG island 15147
Cpgi15148 4 138304242 to 138305323 1081 CpG island CpG island 15148
Tssr39847 4 138304706 to 138304715 9 + TSS region transcription start site region 39847
Tssr39848 4 138304723 to 138304743 20 + TSS region transcription start site region 39848
Ddost 4 138304738 to 138312611 7873 + protein coding gene dolichyl-di-phosphooligosaccharide-protein glycotransferase
Tssr39849 4 138304782 to 138304833 51 + TSS region transcription start site region 39849
Tssr39850 4 138304835 to 138304892 57 + TSS region transcription start site region 39850
Tssr39851 4 138311865 to 138311892 27 + TSS region transcription start site region 39851
Pink1 4 138313409 to 138326296 12887 - protein coding gene PTEN induced putative kinase 1
Mir7019 4 138316132 to 138316200 68 - miRNA gene microRNA 7019
Cpgi15149 4 138325510 to 138326734 1224 CpG island CpG island 15149
Gm27646 4 138325980 to 138326089 109 - miRNA gene predicted gene, 27646
Tssr44159 4 138326234 to 138326305 71 - TSS region transcription start site region 44159
Cda 4 138338424 to 138367992 29568 - protein coding gene cytidine deaminase
Tssr44160 4 138343615 to 138343641 26 - TSS region transcription start site region 44160
Cpgi15150 4 138367721 to 138368192 471 CpG island CpG island 15150
Tssr44161 4 138367881 to 138367892 11 - TSS region transcription start site region 44161
Tssr44162 4 138367952 to 138367965 13 - TSS region transcription start site region 44162
Tssr44163 4 138367966 to 138368008 42 - TSS region transcription start site region 44163
Fam43b 4 138394092 to 138396458 2366 - protein coding gene family with sequence similarity 43, member B
Cpgi15151 4 138394539 to 138396633 2094 CpG island CpG island 15151
AB041806 4 138395198 to 138397714 2516 + antisense lncRNA gene hypothetical protein, MNCb-2457
Tssr44164 4 138396387 to 138396437 50 - TSS region transcription start site region 44164
Tssr44165 4 138396438 to 138396464 26 - TSS region transcription start site region 44165
Tssr39852 4 138425737 to 138425740 3 + TSS region transcription start site region 39852
Rpl38-ps1 4 138425788 to 138426002 214 + pseudogene ribosomal protein L38, pseudogene 1
Cpgi15152 4 138434296 to 138435246 950 CpG island CpG island 15152
Tssr39853 4 138434647 to 138434748 101 + TSS region transcription start site region 39853
Mul1 4 138434671 to 138442265 7594 + protein coding gene mitochondrial ubiquitin ligase activator of NFKB 1
Tssr39854 4 138440571 to 138440574 3 + TSS region transcription start site region 39854
Cpgi15153 4 138453459 to 138456407 2948 CpG island CpG island 15153
Tssr39855 4 138454095 to 138454153 58 + TSS region transcription start site region 39855
Tssr39856 4 138454305 to 138454327 22 + TSS region transcription start site region 39856
Tssr39857 4 138454355 to 138454377 22 + TSS region transcription start site region 39857
Tssr39858 4 138454378 to 138454413 35 + TSS region transcription start site region 39858
Tssr39859 4 138454716 to 138454737 21 + TSS region transcription start site region 39859
Tssr39860 4 138454903 to 138454917 14 + TSS region transcription start site region 39860
Tssr39861 4 138454934 to 138454948 14 + TSS region transcription start site region 39861
Camk2n1 4 138455148 to 138460126 4978 + protein coding gene calcium/calmodulin-dependent protein kinase II inhibitor 1
Tssr39862 4 138456711 to 138456721 10 + TSS region transcription start site region 39862
Tssr39863 4 138456808 to 138456819 11 + TSS region transcription start site region 39863
Tssr44166 4 138456815 to 138456883 68 - TSS region transcription start site region 44166
Tssr39864 4 138456874 to 138456885 11 + TSS region transcription start site region 39864
Tssr39865 4 138457003 to 138457060 57 + TSS region transcription start site region 39865
Tssr44167 4 138457050 to 138457067 17 - TSS region transcription start site region 44167
Tssr44168 4 138457136 to 138457149 13 - TSS region transcription start site region 44168
Tssr44169 4 138457232 to 138457243 11 - TSS region transcription start site region 44169
Tssr39866 4 138457368 to 138457380 12 + TSS region transcription start site region 39866
Tssr39867 4 138457605 to 138457619 14 + TSS region transcription start site region 39867
Tssr39868 4 138457677 to 138457689 12 + TSS region transcription start site region 39868
Tssr39869 4 138457892 to 138457917 25 + TSS region transcription start site region 39869
Tssr39870 4 138457938 to 138457946 8 + TSS region transcription start site region 39870
Tssr39871 4 138457984 to 138458002 18 + TSS region transcription start site region 39871
Tssr44170 4 138459919 to 138459932 13 - TSS region transcription start site region 44170
Gm32549 4 138497634 to 138528513 30879 + lncRNA gene predicted gene, 32549
D4Mit188 4 138508652 to 138508790 138 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 188
Cpgi15154 4 138554777 to 138555042 265 CpG island CpG island 15154
Cpgi15155 4 138555472 to 138555861 389 CpG island CpG island 15155
Vwa5b1 4 138565360 to 138635884 70524 - protein coding gene von Willebrand factor A domain containing 5B1
Gm22961 4 138587624 to 138587729 105 - snRNA gene predicted gene, 22961
D4Mit170 4 138615338 to 138615442 104 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 170
Chlq16 4 138615338 to 138615442 104 QTL circulating hormone level QTL 16
Stheal12 4 138615338 to 138615442 104 QTL soft tissue heal 12
Elsgp1 4 138615338 to 138615442 104 QTL elevated serum gp70 1
Ctrcts 4 138615442 to 45709925 -92905517 QTL cataract severity
Tssr44171 4 138623978 to 138623999 21 - TSS region transcription start site region 44171
Tssr44172 4 138624001 to 138624021 20 - TSS region transcription start site region 44172
Tssr39872 4 138630540 to 138630543 3 + TSS region transcription start site region 39872
Gm32662 4 138638978 to 138657636 18658 + lncRNA gene predicted gene, 32662
Tssr39873 4 138648544 to 138648580 36 + TSS region transcription start site region 39873
Gm32770 4 138677510 to 138711737 34227 + lncRNA gene predicted gene, 32770
4930563F15Rik 4 138677767 to 138679000 1233 unclassified gene RIKEN cDNA 4930563F15 gene
Tssr39874 4 138706868 to 138706908 40 + TSS region transcription start site region 39874
Ubxn10 4 138709837 to 138737167 27330 - protein coding gene UBX domain protein 10
Tssr44173 4 138725210 to 138725258 48 - TSS region transcription start site region 44173
Tssr44174 4 138725262 to 138725267 5 - TSS region transcription start site region 44174
Tssr39875 4 138725282 to 138725309 27 + TSS region transcription start site region 39875
Pla2g2c 4 138725325 to 138744575 19250 + protein coding gene phospholipase A2, group IIC
Pla2g2f 4 138750533 to 138757598 7065 - protein coding gene phospholipase A2, group IIF
Tssr44175 4 138757491 to 138757496 5 - TSS region transcription start site region 44175
Tssr44176 4 138757578 to 138757606 28 - TSS region transcription start site region 44176
Gm42332 4 138761374 to 138769700 8326 - lncRNA gene predicted gene, 42332