Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:138061770-138441959

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70 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Eif4g3 4 137993013 to 138207081 214068 + protein coding gene eukaryotic translation initiation factor 4 gamma, 3
Tssr39822 4 138075152 to 138075164 12 + TSS region transcription start site region 39822
Tssr39823 4 138075169 to 138075183 14 + TSS region transcription start site region 39823
Tssr39824 4 138096755 to 138096773 18 + TSS region transcription start site region 39824
Tssr39825 4 138096817 to 138096835 18 + TSS region transcription start site region 39825
Tssr39826 4 138097304 to 138097328 24 + TSS region transcription start site region 39826
Tssr39827 4 138126497 to 138126510 13 + TSS region transcription start site region 39827
1700095J12Rik 4 138137595 to 138138518 923 - antisense lncRNA gene RIKEN cDNA 1700095J12 gene
Tssr44156 4 138138459 to 138138478 19 - TSS region transcription start site region 44156
Tssr44157 4 138138490 to 138138495 5 - TSS region transcription start site region 44157
Tssr39828 4 138147415 to 138147420 5 + TSS region transcription start site region 39828
Tssr39829 4 138147430 to 138147452 22 + TSS region transcription start site region 39829
Tssr39830 4 138147467 to 138147468 1 + TSS region transcription start site region 39830
Mir6399 4 138163209 to 138163292 83 + miRNA gene microRNA 6399
Tssr39831 4 138172984 to 138172988 4 + TSS region transcription start site region 39831
Tssr39832 4 138175874 to 138175887 13 + TSS region transcription start site region 39832
Tssr39833 4 138206074 to 138206096 22 + TSS region transcription start site region 39833
Tssr39834 4 138206341 to 138206360 19 + TSS region transcription start site region 39834
2310026L22Rik 4 138215714 to 138216189 475 + lincRNA gene RIKEN cDNA 2310026L22 gene
Cpgi15143 4 138216129 to 138217890 1761 CpG island CpG island 15143
Tssr39835 4 138216299 to 138216324 25 + TSS region transcription start site region 39835
Tssr39836 4 138216411 to 138216464 53 + TSS region transcription start site region 39836
Tssr39837 4 138216465 to 138216503 38 + TSS region transcription start site region 39837
Hp1bp3 4 138216612 to 138244683 28071 + protein coding gene heterochromatin protein 1, binding protein 3
Tssr39838 4 138216624 to 138216650 26 + TSS region transcription start site region 39838
Tssr39839 4 138217120 to 138217203 83 + TSS region transcription start site region 39839
Tssr39840 4 138217235 to 138217310 75 + TSS region transcription start site region 39840
Tssr39841 4 138221574 to 138221629 55 + TSS region transcription start site region 39841
Tssr39842 4 138226049 to 138226050 1 + TSS region transcription start site region 39842
Tssr39843 4 138239599 to 138239618 19 + TSS region transcription start site region 39843
Cpgi15144 4 138249646 to 138251050 1404 CpG island CpG island 15144
Tssr44158 4 138250202 to 138250229 27 - TSS region transcription start site region 44158
Sh2d5 4 138250411 to 138260968 10557 + protein coding gene SH2 domain containing 5
Tssr39844 4 138250425 to 138250461 36 + TSS region transcription start site region 39844
Tssr39845 4 138250462 to 138250485 23 + TSS region transcription start site region 39845
Cpgi15145 4 138251770 to 138251959 189 CpG island CpG island 15145
Cpgi15146 4 138261808 to 138262941 1133 CpG island CpG island 15146
Tssr39846 4 138262189 to 138262258 69 + TSS region transcription start site region 39846
Kif17 4 138262251 to 138301973 39722 + protein coding gene kinesin family member 17
Tssr1351 4 138262479 to 138262504 25 + TSS region transcription start site region 1351
Cpgi15147 4 138303916 to 138304128 212 CpG island CpG island 15147
Cpgi15148 4 138304242 to 138305323 1081 CpG island CpG island 15148
Tssr39847 4 138304706 to 138304715 9 + TSS region transcription start site region 39847
Tssr39848 4 138304723 to 138304743 20 + TSS region transcription start site region 39848
Ddost 4 138304738 to 138312611 7873 + protein coding gene dolichyl-di-phosphooligosaccharide-protein glycotransferase
Tssr39849 4 138304782 to 138304833 51 + TSS region transcription start site region 39849
Tssr39850 4 138304835 to 138304892 57 + TSS region transcription start site region 39850
Tssr39851 4 138311865 to 138311892 27 + TSS region transcription start site region 39851
Pink1 4 138313409 to 138326296 12887 - protein coding gene PTEN induced putative kinase 1
Mir7019 4 138316132 to 138316200 68 - miRNA gene microRNA 7019
Cpgi15149 4 138325510 to 138326734 1224 CpG island CpG island 15149
Gm27646 4 138325980 to 138326089 109 - miRNA gene predicted gene, 27646
Tssr44159 4 138326234 to 138326305 71 - TSS region transcription start site region 44159
Cda 4 138338424 to 138367992 29568 - protein coding gene cytidine deaminase
Tssr44160 4 138343615 to 138343641 26 - TSS region transcription start site region 44160
Cpgi15150 4 138367721 to 138368192 471 CpG island CpG island 15150
Tssr44161 4 138367881 to 138367892 11 - TSS region transcription start site region 44161
Tssr44162 4 138367952 to 138367965 13 - TSS region transcription start site region 44162
Tssr44163 4 138367966 to 138368008 42 - TSS region transcription start site region 44163
Fam43b 4 138394092 to 138396458 2366 - protein coding gene family with sequence similarity 43, member B
Cpgi15151 4 138394539 to 138396633 2094 CpG island CpG island 15151
AB041806 4 138395198 to 138397714 2516 + antisense lncRNA gene hypothetical protein, MNCb-2457
Tssr44164 4 138396387 to 138396437 50 - TSS region transcription start site region 44164
Tssr44165 4 138396438 to 138396464 26 - TSS region transcription start site region 44165
Tssr39852 4 138425737 to 138425740 3 + TSS region transcription start site region 39852
Rpl38-ps1 4 138425788 to 138426002 214 + pseudogene ribosomal protein L38, pseudogene 1
Cpgi15152 4 138434296 to 138435246 950 CpG island CpG island 15152
Tssr39853 4 138434647 to 138434748 101 + TSS region transcription start site region 39853
Mul1 4 138434671 to 138442265 7594 + protein coding gene mitochondrial ubiquitin ligase activator of NFKB 1
Tssr39854 4 138440571 to 138440574 3 + TSS region transcription start site region 39854