Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:137790888-138280897

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112 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
ctl 4 133427367 to 137890684 4463317 heritable phenotypic marker curly tail-like
Psds2 4 133427367 to 137890684 4463317 QTL psoriasis-like skin disease severity 2
Ssrq8 4 137148689 to 137890684 741995 QTL stress response QTL 8
Alpl 4 137741733 to 137796384 54651 - protein coding gene alkaline phosphatase, liver/bone/kidney
Cpgi15139 4 137795532 to 137796702 1170 CpG island CpG island 15139
Tssr1350 4 137796285 to 137796296 11 - TSS region transcription start site region 1350
Tssr44149 4 137796308 to 137796325 17 - TSS region transcription start site region 44149
Tssr44150 4 137796350 to 137796361 11 - TSS region transcription start site region 44150
Gm32079 4 137806270 to 137811976 5706 - lncRNA gene predicted gene, 32079
Cpgi15140 4 137861854 to 137862854 1000 CpG island CpG island 15140
Tssr44151 4 137862089 to 137862109 20 - TSS region transcription start site region 44151
Ece1 4 137862237 to 137965229 102992 + protein coding gene endothelin converting enzyme 1
Tssr39783 4 137862238 to 137862249 11 + TSS region transcription start site region 39783
Tssr39784 4 137862252 to 137862268 16 + TSS region transcription start site region 39784
Tssr39785 4 137862270 to 137862321 51 + TSS region transcription start site region 39785
D4Mit67 4 137875950 to 137876087 137 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 67
Tssr44152 4 137881382 to 137881418 36 - TSS region transcription start site region 44152
Gm13012 4 137882370 to 137883937 1567 - antisense lncRNA gene predicted gene 13012
Tssr44153 4 137883915 to 137883965 50 - TSS region transcription start site region 44153
Cinda3 4 137890537 to 142562902 4672365 QTL cytokine induced activation 3
D4Mit54 4 137890537 to 137890684 147 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 54
Bntq18 4 137890537 to 137890684 147 QTL bone traits QTL 18
Athsq1 4 137890537 to 151570093 13679556 QTL atherosclerosis susceptibility QTL 1
Cypr6 4 137890537 to 137890684 147 QTL cytokine production 6
D4Dcr30 4 137890543 to 137890651 108 DNA segment DNA Segment, Chr 4, Derry C. Roopenian 30
Tssr39786 4 137901897 to 137901902 5 + TSS region transcription start site region 39786
Tssr39787 4 137903255 to 137903267 12 + TSS region transcription start site region 39787
Tssr39788 4 137905138 to 137905148 10 + TSS region transcription start site region 39788
Tssr39789 4 137905245 to 137905254 9 + TSS region transcription start site region 39789
Tssr39790 4 137905259 to 137905295 36 + TSS region transcription start site region 39790
Cpgi15141 4 137913295 to 137914097 802 CpG island CpG island 15141
Tssr39791 4 137913487 to 137913539 52 + TSS region transcription start site region 39791
Tssr39792 4 137913547 to 137913564 17 + TSS region transcription start site region 39792
Tssr39793 4 137913697 to 137913728 31 + TSS region transcription start site region 39793
Tssr39794 4 137920744 to 137920761 17 + TSS region transcription start site region 39794
Tssr39795 4 137920765 to 137920778 13 + TSS region transcription start site region 39795
Tssr39796 4 137920782 to 137920830 48 + TSS region transcription start site region 39796
Tssr39797 4 137920872 to 137920887 15 + TSS region transcription start site region 39797
Tssr39798 4 137920888 to 137920920 32 + TSS region transcription start site region 39798
Tssr39799 4 137931197 to 137931202 5 + TSS region transcription start site region 39799
Tssr39800 4 137939369 to 137939375 6 + TSS region transcription start site region 39800
Ssic1 4 137946694 to 137946840 146 QTL susceptibility to small intestinal cancer 1
D4Mit158 4 137946694 to 137946840 146 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 158
Sluc6 4 137946694 to 137946840 146 QTL susceptibility to lung cancer 6
Tb2r1 4 137946694 to 150592401 12645707 QTL TGF-beta2 responsiveness 1
Tssr39801 4 137963824 to 137963838 14 + TSS region transcription start site region 39801
Tssr39802 4 137964474 to 137964540 66 + TSS region transcription start site region 39802
BE691133 4 137991841 to 137993607 1766 unclassified gene expressed sequence BE691133
Cpgi15142 4 137992546 to 137994486 1940 CpG island CpG island 15142
Eif4g3 4 137993013 to 138207081 214068 + protein coding gene eukaryotic translation initiation factor 4 gamma, 3
Tssr39803 4 137993016 to 137993036 20 + TSS region transcription start site region 39803
Tssr39804 4 137993040 to 137993075 35 + TSS region transcription start site region 39804
Tssr44154 4 137993284 to 137993304 20 - TSS region transcription start site region 44154
Tssr39805 4 137993445 to 137993474 29 + TSS region transcription start site region 39805
Tssr39806 4 137993478 to 137993504 26 + TSS region transcription start site region 39806
Tssr39807 4 137993681 to 137993733 52 + TSS region transcription start site region 39807
Tssr39808 4 137993920 to 137993933 13 + TSS region transcription start site region 39808
Tssr39809 4 137994031 to 137994106 75 + TSS region transcription start site region 39809
Gm32394 4 137994151 to 138027903 33752 + lncRNA gene predicted gene, 32394
Tssr44155 4 137994712 to 137994759 47 - TSS region transcription start site region 44155
Tssr39810 4 137994771 to 137994817 46 + TSS region transcription start site region 39810
Tssr39811 4 137995828 to 137995837 9 + TSS region transcription start site region 39811
8030494B02Rik 4 138014003 to 138018382 4379 unclassified non-coding RNA gene Riken cDNA 8030494B02 gene
Tssr39812 4 138014015 to 138014019 4 + TSS region transcription start site region 39812
Tssr39813 4 138017314 to 138017345 31 + TSS region transcription start site region 39813
Tssr39814 4 138017346 to 138017354 8 + TSS region transcription start site region 39814
Tssr39815 4 138019780 to 138019784 4 + TSS region transcription start site region 39815
Tssr39816 4 138035888 to 138035897 9 + TSS region transcription start site region 39816
Tssr39817 4 138041756 to 138041786 30 + TSS region transcription start site region 39817
Tssr39818 4 138045347 to 138045354 7 + TSS region transcription start site region 39818
Tssr39819 4 138045805 to 138045810 5 + TSS region transcription start site region 39819
Tssr39820 4 138057959 to 138057991 32 + TSS region transcription start site region 39820
Tssr39821 4 138058014 to 138058026 12 + TSS region transcription start site region 39821
Tssr39822 4 138075152 to 138075164 12 + TSS region transcription start site region 39822
Tssr39823 4 138075169 to 138075183 14 + TSS region transcription start site region 39823
Tssr39824 4 138096755 to 138096773 18 + TSS region transcription start site region 39824
Tssr39825 4 138096817 to 138096835 18 + TSS region transcription start site region 39825
Tssr39826 4 138097304 to 138097328 24 + TSS region transcription start site region 39826
Tssr39827 4 138126497 to 138126510 13 + TSS region transcription start site region 39827
1700095J12Rik 4 138137595 to 138138518 923 - antisense lncRNA gene RIKEN cDNA 1700095J12 gene
Tssr44156 4 138138459 to 138138478 19 - TSS region transcription start site region 44156
Tssr44157 4 138138490 to 138138495 5 - TSS region transcription start site region 44157
Tssr39828 4 138147415 to 138147420 5 + TSS region transcription start site region 39828
Tssr39829 4 138147430 to 138147452 22 + TSS region transcription start site region 39829
Tssr39830 4 138147467 to 138147468 1 + TSS region transcription start site region 39830
Mir6399 4 138163209 to 138163292 83 + miRNA gene microRNA 6399
Tssr39831 4 138172984 to 138172988 4 + TSS region transcription start site region 39831
Tssr39832 4 138175874 to 138175887 13 + TSS region transcription start site region 39832
Tssr39833 4 138206074 to 138206096 22 + TSS region transcription start site region 39833
Tssr39834 4 138206341 to 138206360 19 + TSS region transcription start site region 39834
2310026L22Rik 4 138215714 to 138216189 475 + lincRNA gene RIKEN cDNA 2310026L22 gene
Cpgi15143 4 138216129 to 138217890 1761 CpG island CpG island 15143
Tssr39835 4 138216299 to 138216324 25 + TSS region transcription start site region 39835
Tssr39836 4 138216411 to 138216464 53 + TSS region transcription start site region 39836
Tssr39837 4 138216465 to 138216503 38 + TSS region transcription start site region 39837
Hp1bp3 4 138216612 to 138244683 28071 + protein coding gene heterochromatin protein 1, binding protein 3
Tssr39838 4 138216624 to 138216650 26 + TSS region transcription start site region 39838
Tssr39839 4 138217120 to 138217203 83 + TSS region transcription start site region 39839
Tssr39840 4 138217235 to 138217310 75 + TSS region transcription start site region 39840
Tssr39841 4 138221574 to 138221629 55 + TSS region transcription start site region 39841
Tssr39842 4 138226049 to 138226050 1 + TSS region transcription start site region 39842
Tssr39843 4 138239599 to 138239618 19 + TSS region transcription start site region 39843
Cpgi15144 4 138249646 to 138251050 1404 CpG island CpG island 15144
Tssr44158 4 138250202 to 138250229 27 - TSS region transcription start site region 44158
Sh2d5 4 138250411 to 138260968 10557 + protein coding gene SH2 domain containing 5
Tssr39844 4 138250425 to 138250461 36 + TSS region transcription start site region 39844
Tssr39845 4 138250462 to 138250485 23 + TSS region transcription start site region 39845
Cpgi15145 4 138251770 to 138251959 189 CpG island CpG island 15145
Cpgi15146 4 138261808 to 138262941 1133 CpG island CpG island 15146
Tssr39846 4 138262189 to 138262258 69 + TSS region transcription start site region 39846
Kif17 4 138262251 to 138301973 39722 + protein coding gene kinesin family member 17
Tssr1351 4 138262479 to 138262504 25 + TSS region transcription start site region 1351