Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:137778255-138028267

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70 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
ctl 4 133427367 to 137890684 4463317 heritable phenotypic marker curly tail-like
Psds2 4 133427367 to 137890684 4463317 QTL psoriasis-like skin disease severity 2
Ssrq8 4 137148689 to 137890684 741995 QTL stress response QTL 8
Alpl 4 137741733 to 137796384 54651 - protein coding gene alkaline phosphatase, liver/bone/kidney
Tssr44146 4 137782182 to 137782229 47 - TSS region transcription start site region 44146
Tssr44147 4 137785506 to 137785516 10 - TSS region transcription start site region 44147
Tssr44148 4 137785668 to 137785677 9 - TSS region transcription start site region 44148
Cpgi15139 4 137795532 to 137796702 1170 CpG island CpG island 15139
Tssr1350 4 137796285 to 137796296 11 - TSS region transcription start site region 1350
Tssr44149 4 137796308 to 137796325 17 - TSS region transcription start site region 44149
Tssr44150 4 137796350 to 137796361 11 - TSS region transcription start site region 44150
Gm32079 4 137806270 to 137811976 5706 - lncRNA gene predicted gene, 32079
Cpgi15140 4 137861854 to 137862854 1000 CpG island CpG island 15140
Tssr44151 4 137862089 to 137862109 20 - TSS region transcription start site region 44151
Ece1 4 137862237 to 137965229 102992 + protein coding gene endothelin converting enzyme 1
Tssr39783 4 137862238 to 137862249 11 + TSS region transcription start site region 39783
Tssr39784 4 137862252 to 137862268 16 + TSS region transcription start site region 39784
Tssr39785 4 137862270 to 137862321 51 + TSS region transcription start site region 39785
D4Mit67 4 137875950 to 137876087 137 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 67
Tssr44152 4 137881382 to 137881418 36 - TSS region transcription start site region 44152
Gm13012 4 137882370 to 137883937 1567 - antisense lncRNA gene predicted gene 13012
Tssr44153 4 137883915 to 137883965 50 - TSS region transcription start site region 44153
Bntq18 4 137890537 to 137890684 147 QTL bone traits QTL 18
Athsq1 4 137890537 to 151570093 13679556 QTL atherosclerosis susceptibility QTL 1
Cinda3 4 137890537 to 142562902 4672365 QTL cytokine induced activation 3
Cypr6 4 137890537 to 137890684 147 QTL cytokine production 6
D4Mit54 4 137890537 to 137890684 147 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 54
D4Dcr30 4 137890543 to 137890651 108 DNA segment DNA Segment, Chr 4, Derry C. Roopenian 30
Tssr39786 4 137901897 to 137901902 5 + TSS region transcription start site region 39786
Tssr39787 4 137903255 to 137903267 12 + TSS region transcription start site region 39787
Tssr39788 4 137905138 to 137905148 10 + TSS region transcription start site region 39788
Tssr39789 4 137905245 to 137905254 9 + TSS region transcription start site region 39789
Tssr39790 4 137905259 to 137905295 36 + TSS region transcription start site region 39790
Cpgi15141 4 137913295 to 137914097 802 CpG island CpG island 15141
Tssr39791 4 137913487 to 137913539 52 + TSS region transcription start site region 39791
Tssr39792 4 137913547 to 137913564 17 + TSS region transcription start site region 39792
Tssr39793 4 137913697 to 137913728 31 + TSS region transcription start site region 39793
Tssr39794 4 137920744 to 137920761 17 + TSS region transcription start site region 39794
Tssr39795 4 137920765 to 137920778 13 + TSS region transcription start site region 39795
Tssr39796 4 137920782 to 137920830 48 + TSS region transcription start site region 39796
Tssr39797 4 137920872 to 137920887 15 + TSS region transcription start site region 39797
Tssr39798 4 137920888 to 137920920 32 + TSS region transcription start site region 39798
Tssr39799 4 137931197 to 137931202 5 + TSS region transcription start site region 39799
Tssr39800 4 137939369 to 137939375 6 + TSS region transcription start site region 39800
Ssic1 4 137946694 to 137946840 146 QTL susceptibility to small intestinal cancer 1
Tb2r1 4 137946694 to 150592401 12645707 QTL TGF-beta2 responsiveness 1
Sluc6 4 137946694 to 137946840 146 QTL susceptibility to lung cancer 6
D4Mit158 4 137946694 to 137946840 146 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 158
Tssr39801 4 137963824 to 137963838 14 + TSS region transcription start site region 39801
Tssr39802 4 137964474 to 137964540 66 + TSS region transcription start site region 39802
BE691133 4 137991841 to 137993607 1766 unclassified gene expressed sequence BE691133
Cpgi15142 4 137992546 to 137994486 1940 CpG island CpG island 15142
Eif4g3 4 137993013 to 138207081 214068 + protein coding gene eukaryotic translation initiation factor 4 gamma, 3
Tssr39803 4 137993016 to 137993036 20 + TSS region transcription start site region 39803
Tssr39804 4 137993040 to 137993075 35 + TSS region transcription start site region 39804
Tssr44154 4 137993284 to 137993304 20 - TSS region transcription start site region 44154
Tssr39805 4 137993445 to 137993474 29 + TSS region transcription start site region 39805
Tssr39806 4 137993478 to 137993504 26 + TSS region transcription start site region 39806
Tssr39807 4 137993681 to 137993733 52 + TSS region transcription start site region 39807
Tssr39808 4 137993920 to 137993933 13 + TSS region transcription start site region 39808
Tssr39809 4 137994031 to 137994106 75 + TSS region transcription start site region 39809
Gm32394 4 137994151 to 138027903 33752 + lncRNA gene predicted gene, 32394
Tssr44155 4 137994712 to 137994759 47 - TSS region transcription start site region 44155
Tssr39810 4 137994771 to 137994817 46 + TSS region transcription start site region 39810
Tssr39811 4 137995828 to 137995837 9 + TSS region transcription start site region 39811
8030494B02Rik 4 138014003 to 138018382 4379 unclassified non-coding RNA gene Riken cDNA 8030494B02 gene
Tssr39812 4 138014015 to 138014019 4 + TSS region transcription start site region 39812
Tssr39813 4 138017314 to 138017345 31 + TSS region transcription start site region 39813
Tssr39814 4 138017346 to 138017354 8 + TSS region transcription start site region 39814
Tssr39815 4 138019780 to 138019784 4 + TSS region transcription start site region 39815