Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:137566136-141016200

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660 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
ctl 4 133427367 to 137890684 4463317 heritable phenotypic marker curly tail-like
Psds2 4 133427367 to 137890684 4463317 QTL psoriasis-like skin disease severity 2
Shm2 4 137148689 to 138615442 1466753 QTL sperm head morphology 2
Ssrq8 4 137148689 to 137890684 741995 QTL stress response QTL 8
Hspg2 4 137468769 to 137570630 101861 + protein coding gene perlecan (heparan sulfate proteoglycan 2)
Ldlrad2 4 137572083 to 137574569 2486 - protein coding gene low density lipoprotein receptor class A domain containing 2
Cpgi15131 4 137578194 to 137578729 535 CpG island CpG island 15131
Cpgi15132 4 137593499 to 137595149 1650 CpG island CpG island 15132
Tssr44127 4 137593575 to 137593584 9 - TSS region transcription start site region 44127
Usp48 4 137594149 to 137658537 64388 + protein coding gene ubiquitin specific peptidase 48
Tssr39760 4 137594149 to 137594274 125 + TSS region transcription start site region 39760
Tssr39761 4 137594312 to 137594319 7 + TSS region transcription start site region 39761
Tssr44128 4 137594817 to 137594842 25 - TSS region transcription start site region 44128
Tssr39762 4 137594941 to 137594968 27 + TSS region transcription start site region 39762
Tssr44129 4 137598562 to 137598569 7 - TSS region transcription start site region 44129
Tssr39763 4 137610671 to 137610708 37 + TSS region transcription start site region 39763
Tssr39764 4 137611950 to 137611951 1 + TSS region transcription start site region 39764
Tssr39765 4 137614539 to 137614543 4 + TSS region transcription start site region 39765
Tssr39766 4 137621039 to 137621050 11 + TSS region transcription start site region 39766
Tssr39767 4 137626692 to 137626707 15 + TSS region transcription start site region 39767
Tssr39768 4 137626834 to 137626838 4 + TSS region transcription start site region 39768
Tssr39769 4 137640324 to 137640327 3 + TSS region transcription start site region 39769
Cpgi15133 4 137664120 to 137665432 1312 CpG island CpG island 15133
Tssr39770 4 137664707 to 137664787 80 + TSS region transcription start site region 39770
Rap1gap 4 137664726 to 137729861 65135 + protein coding gene Rap1 GTPase-activating protein
Tssr44130 4 137666355 to 137666359 4 - TSS region transcription start site region 44130
Cpgi15134 4 137680981 to 137682372 1391 CpG island CpG island 15134
Tssr39771 4 137681589 to 137681618 29 + TSS region transcription start site region 39771
Tssr39772 4 137681663 to 137681719 56 + TSS region transcription start site region 39772
Tssr1349 4 137681724 to 137681735 11 + TSS region transcription start site region 1349
Tssr39773 4 137687390 to 137687428 38 + TSS region transcription start site region 39773
Cpgi15135 4 137689584 to 137689756 172 CpG island CpG island 15135
Rap1gapos 4 137696979 to 137706606 9627 - antisense lncRNA gene RAP1 GTPase activating protein, opposite strand
Tssr44131 4 137706603 to 137706627 24 - TSS region transcription start site region 44131
Cpgi15136 4 137707034 to 137708179 1145 CpG island CpG island 15136
Tssr39774 4 137707458 to 137707527 69 + TSS region transcription start site region 39774
Tssr39775 4 137712023 to 137712041 18 + TSS region transcription start site region 39775
Tssr39776 4 137717330 to 137717355 25 + TSS region transcription start site region 39776
Tssr39777 4 137717364 to 137717381 17 + TSS region transcription start site region 39777
Tssr39778 4 137719214 to 137719223 9 + TSS region transcription start site region 39778
Tssr39779 4 137719244 to 137719253 9 + TSS region transcription start site region 39779
Tssr39780 4 137719520 to 137719523 3 + TSS region transcription start site region 39780
Tssr39781 4 137719685 to 137719725 40 + TSS region transcription start site region 39781
Tssr39782 4 137724446 to 137724475 29 + TSS region transcription start site region 39782
Cpgi15137 4 137726803 to 137727126 323 CpG island CpG island 15137
Cpgi15138 4 137729154 to 137729498 344 CpG island CpG island 15138
Alpl 4 137741733 to 137796384 54651 - protein coding gene alkaline phosphatase, liver/bone/kidney
Tssr44132 4 137742425 to 137742434 9 - TSS region transcription start site region 44132
Tssr44133 4 137758675 to 137758698 23 - TSS region transcription start site region 44133
Tssr44134 4 137766433 to 137766444 11 - TSS region transcription start site region 44134
Tssr44135 4 137766460 to 137766466 6 - TSS region transcription start site region 44135
Tssr44136 4 137766474 to 137766501 27 - TSS region transcription start site region 44136
Tssr44137 4 137769663 to 137769675 12 - TSS region transcription start site region 44137
Tssr44138 4 137769694 to 137769714 20 - TSS region transcription start site region 44138
Tssr44139 4 137769948 to 137769955 7 - TSS region transcription start site region 44139
Tssr44140 4 137769962 to 137769967 5 - TSS region transcription start site region 44140
Tssr44141 4 137769979 to 137769983 4 - TSS region transcription start site region 44141
Tssr44142 4 137769988 to 137770003 15 - TSS region transcription start site region 44142
Tssr44143 4 137770004 to 137770025 21 - TSS region transcription start site region 44143
Tssr44144 4 137770030 to 137770040 10 - TSS region transcription start site region 44144
Tssr44145 4 137770055 to 137770066 11 - TSS region transcription start site region 44145
Tssr44146 4 137782182 to 137782229 47 - TSS region transcription start site region 44146
Tssr44147 4 137785506 to 137785516 10 - TSS region transcription start site region 44147
Tssr44148 4 137785668 to 137785677 9 - TSS region transcription start site region 44148
Cpgi15139 4 137795532 to 137796702 1170 CpG island CpG island 15139
Tssr1350 4 137796285 to 137796296 11 - TSS region transcription start site region 1350
Tssr44149 4 137796308 to 137796325 17 - TSS region transcription start site region 44149
Tssr44150 4 137796350 to 137796361 11 - TSS region transcription start site region 44150
Gm32079 4 137806270 to 137811976 5706 - lncRNA gene predicted gene, 32079
Cpgi15140 4 137861854 to 137862854 1000 CpG island CpG island 15140
Tssr44151 4 137862089 to 137862109 20 - TSS region transcription start site region 44151
Ece1 4 137862237 to 137965229 102992 + protein coding gene endothelin converting enzyme 1
Tssr39783 4 137862238 to 137862249 11 + TSS region transcription start site region 39783
Tssr39784 4 137862252 to 137862268 16 + TSS region transcription start site region 39784
Tssr39785 4 137862270 to 137862321 51 + TSS region transcription start site region 39785
D4Mit67 4 137875950 to 137876087 137 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 67
Tssr44152 4 137881382 to 137881418 36 - TSS region transcription start site region 44152
Gm13012 4 137882370 to 137883937 1567 - antisense lncRNA gene predicted gene 13012
Tssr44153 4 137883915 to 137883965 50 - TSS region transcription start site region 44153
Cypr6 4 137890537 to 137890684 147 QTL cytokine production 6
Cinda3 4 137890537 to 142562902 4672365 QTL cytokine induced activation 3
Bntq18 4 137890537 to 137890684 147 QTL bone traits QTL 18
Athsq1 4 137890537 to 151570093 13679556 QTL atherosclerosis susceptibility QTL 1
D4Mit54 4 137890537 to 137890684 147 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 54
D4Dcr30 4 137890543 to 137890651 108 DNA segment DNA Segment, Chr 4, Derry C. Roopenian 30
Tssr39786 4 137901897 to 137901902 5 + TSS region transcription start site region 39786
Tssr39787 4 137903255 to 137903267 12 + TSS region transcription start site region 39787
Tssr39788 4 137905138 to 137905148 10 + TSS region transcription start site region 39788
Tssr39789 4 137905245 to 137905254 9 + TSS region transcription start site region 39789
Tssr39790 4 137905259 to 137905295 36 + TSS region transcription start site region 39790
Cpgi15141 4 137913295 to 137914097 802 CpG island CpG island 15141
Tssr39791 4 137913487 to 137913539 52 + TSS region transcription start site region 39791
Tssr39792 4 137913547 to 137913564 17 + TSS region transcription start site region 39792
Tssr39793 4 137913697 to 137913728 31 + TSS region transcription start site region 39793
Tssr39794 4 137920744 to 137920761 17 + TSS region transcription start site region 39794
Tssr39795 4 137920765 to 137920778 13 + TSS region transcription start site region 39795
Tssr39796 4 137920782 to 137920830 48 + TSS region transcription start site region 39796
Tssr39797 4 137920872 to 137920887 15 + TSS region transcription start site region 39797
Tssr39798 4 137920888 to 137920920 32 + TSS region transcription start site region 39798
Tssr39799 4 137931197 to 137931202 5 + TSS region transcription start site region 39799
Tssr39800 4 137939369 to 137939375 6 + TSS region transcription start site region 39800
D4Mit158 4 137946694 to 137946840 146 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 158
Tb2r1 4 137946694 to 150592401 12645707 QTL TGF-beta2 responsiveness 1
Sluc6 4 137946694 to 137946840 146 QTL susceptibility to lung cancer 6
Ssic1 4 137946694 to 137946840 146 QTL susceptibility to small intestinal cancer 1
Tssr39801 4 137963824 to 137963838 14 + TSS region transcription start site region 39801
Tssr39802 4 137964474 to 137964540 66 + TSS region transcription start site region 39802
BE691133 4 137991841 to 137993607 1766 unclassified gene expressed sequence BE691133
Cpgi15142 4 137992546 to 137994486 1940 CpG island CpG island 15142
Eif4g3 4 137993013 to 138207081 214068 + protein coding gene eukaryotic translation initiation factor 4 gamma, 3
Tssr39803 4 137993016 to 137993036 20 + TSS region transcription start site region 39803
Tssr39804 4 137993040 to 137993075 35 + TSS region transcription start site region 39804
Tssr44154 4 137993284 to 137993304 20 - TSS region transcription start site region 44154
Tssr39805 4 137993445 to 137993474 29 + TSS region transcription start site region 39805
Tssr39806 4 137993478 to 137993504 26 + TSS region transcription start site region 39806
Tssr39807 4 137993681 to 137993733 52 + TSS region transcription start site region 39807
Tssr39808 4 137993920 to 137993933 13 + TSS region transcription start site region 39808
Tssr39809 4 137994031 to 137994106 75 + TSS region transcription start site region 39809
Gm32394 4 137994151 to 138027903 33752 + lncRNA gene predicted gene, 32394
Tssr44155 4 137994712 to 137994759 47 - TSS region transcription start site region 44155
Tssr39810 4 137994771 to 137994817 46 + TSS region transcription start site region 39810
Tssr39811 4 137995828 to 137995837 9 + TSS region transcription start site region 39811
8030494B02Rik 4 138014003 to 138018382 4379 unclassified non-coding RNA gene Riken cDNA 8030494B02 gene
Tssr39812 4 138014015 to 138014019 4 + TSS region transcription start site region 39812
Tssr39813 4 138017314 to 138017345 31 + TSS region transcription start site region 39813
Tssr39814 4 138017346 to 138017354 8 + TSS region transcription start site region 39814
Tssr39815 4 138019780 to 138019784 4 + TSS region transcription start site region 39815
Tssr39816 4 138035888 to 138035897 9 + TSS region transcription start site region 39816
Tssr39817 4 138041756 to 138041786 30 + TSS region transcription start site region 39817
Tssr39818 4 138045347 to 138045354 7 + TSS region transcription start site region 39818
Tssr39819 4 138045805 to 138045810 5 + TSS region transcription start site region 39819
Tssr39820 4 138057959 to 138057991 32 + TSS region transcription start site region 39820
Tssr39821 4 138058014 to 138058026 12 + TSS region transcription start site region 39821
Tssr39822 4 138075152 to 138075164 12 + TSS region transcription start site region 39822
Tssr39823 4 138075169 to 138075183 14 + TSS region transcription start site region 39823
Tssr39824 4 138096755 to 138096773 18 + TSS region transcription start site region 39824
Tssr39825 4 138096817 to 138096835 18 + TSS region transcription start site region 39825
Tssr39826 4 138097304 to 138097328 24 + TSS region transcription start site region 39826
Tssr39827 4 138126497 to 138126510 13 + TSS region transcription start site region 39827
1700095J12Rik 4 138137595 to 138138518 923 - antisense lncRNA gene RIKEN cDNA 1700095J12 gene
Tssr44156 4 138138459 to 138138478 19 - TSS region transcription start site region 44156
Tssr44157 4 138138490 to 138138495 5 - TSS region transcription start site region 44157
Tssr39828 4 138147415 to 138147420 5 + TSS region transcription start site region 39828
Tssr39829 4 138147430 to 138147452 22 + TSS region transcription start site region 39829
Tssr39830 4 138147467 to 138147468 1 + TSS region transcription start site region 39830
Mir6399 4 138163209 to 138163292 83 + miRNA gene microRNA 6399
Tssr39831 4 138172984 to 138172988 4 + TSS region transcription start site region 39831
Tssr39832 4 138175874 to 138175887 13 + TSS region transcription start site region 39832
Tssr39833 4 138206074 to 138206096 22 + TSS region transcription start site region 39833
Tssr39834 4 138206341 to 138206360 19 + TSS region transcription start site region 39834
2310026L22Rik 4 138215714 to 138216189 475 + lincRNA gene RIKEN cDNA 2310026L22 gene
Cpgi15143 4 138216129 to 138217890 1761 CpG island CpG island 15143
Tssr39835 4 138216299 to 138216324 25 + TSS region transcription start site region 39835
Tssr39836 4 138216411 to 138216464 53 + TSS region transcription start site region 39836
Tssr39837 4 138216465 to 138216503 38 + TSS region transcription start site region 39837
Hp1bp3 4 138216612 to 138244683 28071 + protein coding gene heterochromatin protein 1, binding protein 3
Tssr39838 4 138216624 to 138216650 26 + TSS region transcription start site region 39838
Tssr39839 4 138217120 to 138217203 83 + TSS region transcription start site region 39839
Tssr39840 4 138217235 to 138217310 75 + TSS region transcription start site region 39840
Tssr39841 4 138221574 to 138221629 55 + TSS region transcription start site region 39841
Tssr39842 4 138226049 to 138226050 1 + TSS region transcription start site region 39842
Tssr39843 4 138239599 to 138239618 19 + TSS region transcription start site region 39843
Cpgi15144 4 138249646 to 138251050 1404 CpG island CpG island 15144
Tssr44158 4 138250202 to 138250229 27 - TSS region transcription start site region 44158
Sh2d5 4 138250411 to 138260968 10557 + protein coding gene SH2 domain containing 5
Tssr39844 4 138250425 to 138250461 36 + TSS region transcription start site region 39844
Tssr39845 4 138250462 to 138250485 23 + TSS region transcription start site region 39845
Cpgi15145 4 138251770 to 138251959 189 CpG island CpG island 15145
Cpgi15146 4 138261808 to 138262941 1133 CpG island CpG island 15146
Tssr39846 4 138262189 to 138262258 69 + TSS region transcription start site region 39846
Kif17 4 138262251 to 138301973 39722 + protein coding gene kinesin family member 17
Tssr1351 4 138262479 to 138262504 25 + TSS region transcription start site region 1351
Cpgi15147 4 138303916 to 138304128 212 CpG island CpG island 15147
Cpgi15148 4 138304242 to 138305323 1081 CpG island CpG island 15148
Tssr39847 4 138304706 to 138304715 9 + TSS region transcription start site region 39847
Tssr39848 4 138304723 to 138304743 20 + TSS region transcription start site region 39848
Ddost 4 138304738 to 138312611 7873 + protein coding gene dolichyl-di-phosphooligosaccharide-protein glycotransferase
Tssr39849 4 138304782 to 138304833 51 + TSS region transcription start site region 39849
Tssr39850 4 138304835 to 138304892 57 + TSS region transcription start site region 39850
Tssr39851 4 138311865 to 138311892 27 + TSS region transcription start site region 39851
Pink1 4 138313409 to 138326296 12887 - protein coding gene PTEN induced putative kinase 1
Mir7019 4 138316132 to 138316200 68 - miRNA gene microRNA 7019
Cpgi15149 4 138325510 to 138326734 1224 CpG island CpG island 15149
Gm27646 4 138325980 to 138326089 109 - miRNA gene predicted gene, 27646
Tssr44159 4 138326234 to 138326305 71 - TSS region transcription start site region 44159
Cda 4 138338424 to 138367992 29568 - protein coding gene cytidine deaminase
Tssr44160 4 138343615 to 138343641 26 - TSS region transcription start site region 44160
Cpgi15150 4 138367721 to 138368192 471 CpG island CpG island 15150
Tssr44161 4 138367881 to 138367892 11 - TSS region transcription start site region 44161
Tssr44162 4 138367952 to 138367965 13 - TSS region transcription start site region 44162
Tssr44163 4 138367966 to 138368008 42 - TSS region transcription start site region 44163
Fam43b 4 138394092 to 138396458 2366 - protein coding gene family with sequence similarity 43, member B
Cpgi15151 4 138394539 to 138396633 2094 CpG island CpG island 15151
AB041806 4 138395198 to 138397714 2516 + antisense lncRNA gene hypothetical protein, MNCb-2457
Tssr44164 4 138396387 to 138396437 50 - TSS region transcription start site region 44164
Tssr44165 4 138396438 to 138396464 26 - TSS region transcription start site region 44165
Tssr39852 4 138425737 to 138425740 3 + TSS region transcription start site region 39852
Rpl38-ps1 4 138425788 to 138426002 214 + pseudogene ribosomal protein L38, pseudogene 1
Cpgi15152 4 138434296 to 138435246 950 CpG island CpG island 15152
Tssr39853 4 138434647 to 138434748 101 + TSS region transcription start site region 39853