Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:13741494-15501506

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101 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi14047 4 13742749 to 13744002 1253 CpG island CpG island 14047
Tssr36513 4 13742775 to 13742810 35 + TSS region transcription start site region 36513
Tssr36514 4 13743294 to 13743316 22 + TSS region transcription start site region 36514
Tssr36515 4 13743352 to 13743379 27 + TSS region transcription start site region 36515
Tssr36516 4 13743424 to 13743478 54 + TSS region transcription start site region 36516
Runx1t1 4 13743436 to 13893649 150213 + protein coding gene RUNX1 translocation partner 1
Tssr36517 4 13743479 to 13743510 31 + TSS region transcription start site region 36517
Tssr36518 4 13743514 to 13743534 20 + TSS region transcription start site region 36518
Cpgi14048 4 13744356 to 13744599 243 CpG island CpG island 14048
Cpgi14049 4 13750933 to 13751759 826 CpG island CpG island 14049
Tssr36519 4 13751335 to 13751358 23 + TSS region transcription start site region 36519
Tssr36520 4 13751367 to 13751392 25 + TSS region transcription start site region 36520
Tssr36521 4 13751537 to 13751557 20 + TSS region transcription start site region 36521
Tssr36522 4 13751576 to 13751592 16 + TSS region transcription start site region 36522
C130062D02Rik 4 13773906 to 13780278 6372 unclassified gene RIKEN cDNA C130062D02 gene
Tssr1122 4 13784749 to 13784791 42 + TSS region transcription start site region 1122
Cpgi14050 4 13784969 to 13785224 255 CpG island CpG island 14050
Tssr36523 4 13785021 to 13785071 50 + TSS region transcription start site region 36523
Tssr36524 4 13785081 to 13785120 39 + TSS region transcription start site region 36524
Tssr36525 4 13790749 to 13790750 1 + TSS region transcription start site region 36525
Tssr36526 4 13797059 to 13797064 5 + TSS region transcription start site region 36526
Tssr36527 4 13804137 to 13804158 21 + TSS region transcription start site region 36527
Tssr36528 4 13827940 to 13827949 9 + TSS region transcription start site region 36528
4833406L22Rik 4 13854781 to 13855749 968 unclassified gene RIKEN cDNA 4833406L22 gene
Tssr36529 4 13854804 to 13854808 4 + TSS region transcription start site region 36529
Tssr36530 4 13890079 to 13890082 3 + TSS region transcription start site region 36530
Tssr36531 4 13892204 to 13892212 8 + TSS region transcription start site region 36531
Gm11823 4 13919954 to 13995193 75239 - lincRNA gene predicted gene 11823
D4Mit18 4 14010457 to 14010682 225 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 18
Lyr2 4 14010457 to 63365441 49354984 QTL lymphoma resistance 2
Gm24068 4 14079809 to 14079940 131 - snoRNA gene predicted gene, 24068
Tssr36532 4 14169975 to 14169984 9 + TSS region transcription start site region 36532
Gm11824 4 14170066 to 14170911 845 + pseudogene predicted gene 11824
Gm2560 4 14212012 to 14291309 79297 - lncRNA gene predicted gene 2560
1700120G11Rik 4 14219496 to 14237450 17954 - lincRNA gene RIKEN cDNA 1700120G11 gene
Gm24908 4 14239618 to 14239744 126 + snoRNA gene predicted gene, 24908
Tssr36533 4 14240198 to 14240209 11 + TSS region transcription start site region 36533
Tssr36534 4 14284434 to 14284435 1 + TSS region transcription start site region 36534
Tssr36535 4 14433842 to 14433848 6 + TSS region transcription start site region 36535
Gm11836 4 14433891 to 14434331 440 + pseudogene predicted gene 11836
Slc26a7 4 14502430 to 14621805 119375 - protein coding gene solute carrier family 26, member 7
Tssr40956 4 14516367 to 14516378 11 - TSS region transcription start site region 40956
2310046G18Rik 4 14525863 to 14526196 333 unclassified gene RIKEN cDNA 2310046G18 gene
Tssr40957 4 14544214 to 14544231 17 - TSS region transcription start site region 40957
Tssr40958 4 14621494 to 14621506 12 - TSS region transcription start site region 40958
Tssr40959 4 14621770 to 14621786 16 - TSS region transcription start site region 40959
Tssr40960 4 14621792 to 14621797 5 - TSS region transcription start site region 40960
Tssr40961 4 14621808 to 14621819 11 - TSS region transcription start site region 40961
Lrrc69 4 14623620 to 14796060 172440 - protein coding gene leucine rich repeat containing 69
Gm11838 4 14766335 to 14766565 230 + pseudogene predicted gene 11838
Tssr40962 4 14796033 to 14796045 12 - TSS region transcription start site region 40962
Tssr40963 4 14796053 to 14796065 12 - TSS region transcription start site region 40963
Otud6b 4 14809505 to 14826587 17082 - protein coding gene OTU domain containing 6B
Cpgi14051 4 14825937 to 14826771 834 CpG island CpG island 14051
Tssr40964 4 14826390 to 14826447 57 - TSS region transcription start site region 40964
Tssr40965 4 14826544 to 14826555 11 - TSS region transcription start site region 40965
Tssr40966 4 14826582 to 14826589 7 - TSS region transcription start site region 40966
Tssr40967 4 14826597 to 14826606 9 - TSS region transcription start site region 40967
Tssr36536 4 14863994 to 14864018 24 + TSS region transcription start site region 36536
Tssr36537 4 14864023 to 14864043 20 + TSS region transcription start site region 36537
Tssr36538 4 14864049 to 14864060 11 + TSS region transcription start site region 36538
Tssr36539 4 14864091 to 14864150 59 + TSS region transcription start site region 36539
Cpgi14052 4 14864119 to 14864639 520 CpG island CpG island 14052
Tssr36540 4 14864178 to 14864195 17 + TSS region transcription start site region 36540
Tssr36541 4 14864200 to 14864334 134 + TSS region transcription start site region 36541
Pip4p2 4 14864219 to 14915260 51041 + protein coding gene phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2
Tssr36542 4 14864383 to 14864392 9 + TSS region transcription start site region 36542
Tssr36543 4 14899409 to 14899411 2 + TSS region transcription start site region 36543
Tssr36544 4 14914450 to 14914457 7 + TSS region transcription start site region 36544
Cpgi14053 4 14929837 to 14931045 1208 CpG island CpG island 14053
Tssr36545 4 14929860 to 14929871 11 + TSS region transcription start site region 36545
Gm11837 4 14929908 to 14953030 23122 + antisense lncRNA gene predicted gene 11837
Tssr36546 4 14930619 to 14930701 82 + TSS region transcription start site region 36546
Tssr36547 4 14930709 to 14930720 11 + TSS region transcription start site region 36547
Necab1 4 14952245 to 15149794 197549 - protein coding gene N-terminal EF-hand calcium binding protein 1
Tssr36548 4 15022530 to 15022556 26 + TSS region transcription start site region 36548
Gm11844 4 15022582 to 15031987 9405 + antisense lncRNA gene predicted gene 11844
Gm36801 4 15090169 to 15126648 36479 + lncRNA gene predicted gene, 36801
Cpgi14054 4 15148776 to 15149269 493 CpG island CpG island 14054
Tssr40968 4 15148941 to 15148952 11 - TSS region transcription start site region 40968
Tssr40969 4 15148961 to 15148972 11 - TSS region transcription start site region 40969
Tssr40970 4 15148977 to 15149009 32 - TSS region transcription start site region 40970
Tssr40971 4 15149011 to 15149045 34 - TSS region transcription start site region 40971
Tssr40972 4 15149051 to 15149070 19 - TSS region transcription start site region 40972
Tssr40973 4 15149755 to 15149773 18 - TSS region transcription start site region 40973
Gm11845 4 15154392 to 15154718 326 + pseudogene predicted gene 11845
Tssr1123 4 15185398 to 15185399 1 + TSS region transcription start site region 1123
Cpgi14055 4 15265373 to 15266822 1449 CpG island CpG island 14055
Tssr36549 4 15265767 to 15265782 15 + TSS region transcription start site region 36549
Tssr36550 4 15265798 to 15265809 11 + TSS region transcription start site region 36550
Tmem64 4 15265831 to 15286753 20922 + protein coding gene transmembrane protein 64
Tssr36551 4 15266102 to 15266173 71 + TSS region transcription start site region 36551
Tssr36552 4 15266187 to 15266198 11 + TSS region transcription start site region 36552
Tssr36553 4 15269608 to 15269633 25 + TSS region transcription start site region 36553
Tssr36554 4 15284374 to 15284419 45 + TSS region transcription start site region 36554
Gm29883 4 15289097 to 15327768 38671 + lncRNA gene predicted gene, 29883
Tssr40974 4 15300080 to 15300092 12 - TSS region transcription start site region 40974
Gm29829 4 15309147 to 15317491 8344 - lncRNA gene predicted gene, 29829
Gm24317 4 15383148 to 15383254 106 + snRNA gene predicted gene, 24317
Gm11856 4 15486366 to 15486790 424 + pseudogene predicted gene 11856
Mvwf3 4 117215009 to 14010457 -103204552 QTL modifier of von Willebrand factor 3