Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:136896675-137658847

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130 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tlsr3 4 129572018 to 137137225 7565207 QTL thymic lymphoma suppressor region 3
C1qa 4 136895917 to 136898803 2886 - protein coding gene complement component 1, q subcomponent, alpha polypeptide
Tssr44098 4 136898232 to 136898257 25 - TSS region transcription start site region 44098
Tssr44099 4 136898762 to 136898792 30 - TSS region transcription start site region 44099
Tssr44100 4 136898810 to 136898823 13 - TSS region transcription start site region 44100
Tssr44101 4 136898826 to 136898838 12 - TSS region transcription start site region 44101
Tssr44102 4 136898840 to 136898850 10 - TSS region transcription start site region 44102
Tssr39729 4 136909835 to 136909850 15 + TSS region transcription start site region 39729
Tssr39730 4 136909851 to 136909858 7 + TSS region transcription start site region 39730
D4Mit251 4 136927196 to 136927309 113 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 251
Epha8 4 136929419 to 136956816 27397 - protein coding gene Eph receptor A8
Tssr1344 4 136943212 to 136943214 2 + TSS region transcription start site region 1344
Tssr39731 4 136945615 to 136945618 3 + TSS region transcription start site region 39731
Tssr39732 4 136945624 to 136945634 10 + TSS region transcription start site region 39732
Tssr39733 4 136945640 to 136945666 26 + TSS region transcription start site region 39733
Tssr39734 4 136945679 to 136945694 15 + TSS region transcription start site region 39734
Tssr39735 4 136945701 to 136945706 5 + TSS region transcription start site region 39735
Tssr39736 4 136953025 to 136953031 6 + TSS region transcription start site region 39736
Cpgi15121 4 136956086 to 136957650 1564 CpG island CpG island 15121
Tssr44103 4 136956571 to 136956578 7 - TSS region transcription start site region 44103
Tssr44104 4 136956784 to 136956871 87 - TSS region transcription start site region 44104
Zbtb40 4 136979732 to 137048801 69069 - protein coding gene zinc finger and BTB domain containing 40
Tssr44105 4 137015129 to 137015133 4 - TSS region transcription start site region 44105
Gm23834 4 137025684 to 137025812 128 + snoRNA gene predicted gene, 23834
Cpgi15122 4 137047860 to 137049037 1177 CpG island CpG island 15122
Tssr44106 4 137048777 to 137048807 30 - TSS region transcription start site region 44106
Gm31648 4 137076595 to 137095101 18506 + lncRNA gene predicted gene, 31648
1700037C06Rik 4 137116709 to 137117582 873 - lincRNA gene RIKEN cDNA 1700037C06 gene
Gm13001 4 137117143 to 137118143 1000 - lincRNA gene predicted gene 13001
Cpgi15123 4 137118050 to 137118275 225 CpG island CpG island 15123
Tssr44107 4 137118135 to 137118165 30 - TSS region transcription start site region 44107
Tssr39737 4 137129376 to 137129380 4 + TSS region transcription start site region 39737
Bw8q2 4 137137122 to 137137225 103 QTL body weight at 8 weeks QTL 2
Bis1 4 137137122 to 137137225 103 QTL beta-carboline-induced seizures 1
D4Mit68 4 137137122 to 137137225 103 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 68
Gm31762 4 137139496 to 137142458 2962 - lncRNA gene predicted gene, 31762
Tssr39738 4 137146698 to 137146702 4 + TSS region transcription start site region 39738
Cpgi15124 4 137147965 to 137148173 208 CpG island CpG island 15124
D4Mit148 4 137148689 to 137148816 127 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 148
Ssrq8 4 137148689 to 137890684 741995 QTL stress response QTL 8
Shm2 4 137148689 to 138615442 1466753 QTL sperm head morphology 2
Gm13003 4 137159082 to 137165066 5984 - lincRNA gene predicted gene 13003
Tssr44108 4 137166823 to 137166841 18 - TSS region transcription start site region 44108
Gm46872 4 137171297 to 137178084 6787 - lncRNA gene predicted gene, 46872
Gm25399 4 137183987 to 137184062 75 + miRNA gene predicted gene, 25399
Gm23263 4 137184065 to 137184140 75 + miRNA gene predicted gene, 23263
Gm31820 4 137184081 to 137252761 68680 - lncRNA gene predicted gene, 31820
Gm13005 4 137219760 to 137220399 639 - pseudogene predicted gene 13005
Gm13002 4 137222641 to 137223322 681 - pseudogene predicted gene 13002
Tssr44109 4 137249116 to 137249119 3 - TSS region transcription start site region 44109
D4Mit282 4 137256843 to 137256964 121 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 282
Cpgi15125 4 137276675 to 137278847 2172 CpG island CpG island 15125
Tssr1345 4 137277482 to 137277485 3 + TSS region transcription start site region 1345
Tssr39739 4 137277500 to 137277518 18 + TSS region transcription start site region 39739
Tssr39740 4 137277587 to 137277589 2 + TSS region transcription start site region 39740
Wnt4 4 137277635 to 137299501 21866 + protein coding gene wingless-type MMTV integration site family, member 4
Tssr44110 4 137279195 to 137279202 7 - TSS region transcription start site region 44110
Cpgi15126 4 137296369 to 137296598 229 CpG island CpG island 15126
Tssr39741 4 137296886 to 137296905 19 + TSS region transcription start site region 39741
Cdc42 4 137319696 to 137357720 38024 - protein coding gene cell division cycle 42
Tssr44111 4 137320527 to 137320543 16 - TSS region transcription start site region 44111
Tssr39742 4 137320935 to 137320959 24 + TSS region transcription start site region 39742
Tssr44112 4 137321102 to 137321155 53 - TSS region transcription start site region 44112
Tssr44113 4 137325544 to 137325566 22 - TSS region transcription start site region 44113
Gm25772 4 137325559 to 137325614 55 + snRNA gene predicted gene, 25772
Tssr44114 4 137329089 to 137329127 38 - TSS region transcription start site region 44114
Tssr44115 4 137336126 to 137336139 13 - TSS region transcription start site region 44115
A430061O12Rik 4 137336386 to 137340094 3708 unclassified gene RIKEN cDNA A430061O12 gene
Tssr44116 4 137339278 to 137339282 4 - TSS region transcription start site region 44116
Tssr44117 4 137344060 to 137344070 10 - TSS region transcription start site region 44117
Tssr44118 4 137345253 to 137345261 8 - TSS region transcription start site region 44118
2610020P09Rik 4 137350570 to 137352305 1735 unclassified gene RIKEN cDNA 2610020P09 gene
D4Ertd76e 4 137353926 to 137354175 249 DNA segment DNA segment, Chr 4, ERATO Doi 76, expressed
Tssr44119 4 137356310 to 137356318 8 - TSS region transcription start site region 44119
Cpgi15127 4 137356908 to 137358058 1150 CpG island CpG island 15127
Tssr44120 4 137357661 to 137357710 49 - TSS region transcription start site region 44120
Tssr44121 4 137357711 to 137357722 11 - TSS region transcription start site region 44121
2810405F17Rik 4 137387266 to 137388382 1116 - lincRNA gene RIKEN cDNA 2810405F17 gene
Cpgi15128 4 137387810 to 137388723 913 CpG island CpG island 15128
Tssr44122 4 137388135 to 137388167 32 - TSS region transcription start site region 44122
Tssr44123 4 137388371 to 137388430 59 - TSS region transcription start site region 44123
Tssr1346 4 137388694 to 137388704 10 + TSS region transcription start site region 1346
Rpl31-ps10 4 137395299 to 137395676 377 + pseudogene ribosomal protein L31, pseudogene 10
Cela3a 4 137401554 to 137409791 8237 - protein coding gene chymotrypsin-like elastase family, member 3A
Tssr44124 4 137409777 to 137409778 1 - TSS region transcription start site region 44124
Cela3b 4 137421008 to 137430520 9512 - protein coding gene chymotrypsin-like elastase family, member 3B
Tssr39743 4 137424778 to 137424797 19 + TSS region transcription start site region 39743
Tssr39744 4 137424859 to 137424870 11 + TSS region transcription start site region 39744
Tssr39745 4 137424875 to 137424889 14 + TSS region transcription start site region 39745
Tssr44125 4 137430517 to 137430525 8 - TSS region transcription start site region 44125
Gm13010 4 137436579 to 137438395 1816 - antisense lncRNA gene predicted gene 13010
Tssr44126 4 137437793 to 137437827 34 - TSS region transcription start site region 44126
Tssr39746 4 137453253 to 137453316 63 + TSS region transcription start site region 39746
1700013G24Rik 4 137453296 to 137455461 2165 + protein coding gene RIKEN cDNA 1700013G24 gene
Tssr39747 4 137453320 to 137453335 15 + TSS region transcription start site region 39747
Tssr39748 4 137454593 to 137454606 13 + TSS region transcription start site region 39748
Tssr39749 4 137454761 to 137454772 11 + TSS region transcription start site region 39749
Tssr39750 4 137454778 to 137454784 6 + TSS region transcription start site region 39750
Cpgi15129 4 137468226 to 137469358 1132 CpG island CpG island 15129
Tssr39751 4 137468767 to 137468831 64 + TSS region transcription start site region 39751
Hspg2 4 137468769 to 137570630 101861 + protein coding gene perlecan (heparan sulfate proteoglycan 2)
Tssr1347 4 137484694 to 137484697 3 + TSS region transcription start site region 1347
Tssr39752 4 137485163 to 137485174 11 + TSS region transcription start site region 39752
Tssr39753 4 137507246 to 137507250 4 + TSS region transcription start site region 39753
Tssr1348 4 137510971 to 137510992 21 + TSS region transcription start site region 1348
Tssr39754 4 137511066 to 137511103 37 + TSS region transcription start site region 39754
Mir7018 4 137538286 to 137538370 84 + miRNA gene microRNA 7018
Cpgi15130 4 137553621 to 137553826 205 CpG island CpG island 15130
Tssr39755 4 137554430 to 137554432 2 + TSS region transcription start site region 39755
Tssr39756 4 137560670 to 137560679 9 + TSS region transcription start site region 39756
Tssr39757 4 137560698 to 137560719 21 + TSS region transcription start site region 39757
Tssr39758 4 137560724 to 137560738 14 + TSS region transcription start site region 39758
Tssr39759 4 137563943 to 137563963 20 + TSS region transcription start site region 39759
Ldlrad2 4 137572083 to 137574569 2486 - protein coding gene low density lipoprotein receptor class A domain containing 2
Cpgi15131 4 137578194 to 137578729 535 CpG island CpG island 15131
Cpgi15132 4 137593499 to 137595149 1650 CpG island CpG island 15132
Tssr44127 4 137593575 to 137593584 9 - TSS region transcription start site region 44127
Usp48 4 137594149 to 137658537 64388 + protein coding gene ubiquitin specific peptidase 48
Tssr39760 4 137594149 to 137594274 125 + TSS region transcription start site region 39760
Tssr39761 4 137594312 to 137594319 7 + TSS region transcription start site region 39761
Tssr44128 4 137594817 to 137594842 25 - TSS region transcription start site region 44128
Tssr39762 4 137594941 to 137594968 27 + TSS region transcription start site region 39762
Tssr44129 4 137598562 to 137598569 7 - TSS region transcription start site region 44129
Tssr39763 4 137610671 to 137610708 37 + TSS region transcription start site region 39763
Tssr39764 4 137611950 to 137611951 1 + TSS region transcription start site region 39764
Tssr39765 4 137614539 to 137614543 4 + TSS region transcription start site region 39765
Tssr39766 4 137621039 to 137621050 11 + TSS region transcription start site region 39766
Tssr39767 4 137626692 to 137626707 15 + TSS region transcription start site region 39767
Tssr39768 4 137626834 to 137626838 4 + TSS region transcription start site region 39768
Tssr39769 4 137640324 to 137640327 3 + TSS region transcription start site region 39769