Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:136343259-136733296

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51 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hnrnpr 4 136310942 to 136345981 35039 + protein coding gene heterogeneous nuclear ribonucleoprotein R
Tssr39705 4 136347309 to 136347312 3 + TSS region transcription start site region 39705
Gm27022 4 136347847 to 136349441 1594 - lincRNA gene predicted gene, 27022
9130020K20Rik 4 136350334 to 136359447 9113 + lncRNA gene RIKEN cDNA 9130020K20 gene
Tssr39706 4 136357423 to 136357432 9 + TSS region transcription start site region 39706
D4Mit69 4 136361074 to 136361203 129 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 69
D4Dcr29 4 136361089 to 136361191 102 DNA segment DNA Segment, Chr 4, Derry C. Roopenian 29
Gm31295 4 136387466 to 136388993 1527 + lncRNA gene predicted gene, 31295
Htr1d 4 136423524 to 136444398 20874 + protein coding gene 5-hydroxytryptamine (serotonin) receptor 1D
Tssr39707 4 136424056 to 136424067 11 + TSS region transcription start site region 39707
Cpgi15110 4 136424252 to 136425279 1027 CpG island CpG island 15110
Tssr39708 4 136424574 to 136424590 16 + TSS region transcription start site region 39708
Cpgi15111 4 136442805 to 136443157 352 CpG island CpG island 15111
Cpgi15112 4 136462056 to 136462959 903 CpG island CpG island 15112
6030445D17Rik 4 136462250 to 136463977 1727 + unclassified gene RIKEN cDNA 6030445D17 gene
Tssr39709 4 136462582 to 136462623 41 + TSS region transcription start site region 39709
Cpgi15113 4 136469440 to 136470890 1450 CpG island CpG island 15113
Luzp1 4 136469749 to 136554725 84976 + protein coding gene leucine zipper protein 1
Tssr39710 4 136469755 to 136469815 60 + TSS region transcription start site region 39710
Tssr39711 4 136479872 to 136479877 5 + TSS region transcription start site region 39711
Tssr39712 4 136495597 to 136495601 4 + TSS region transcription start site region 39712
Tssr39713 4 136538259 to 136538296 37 + TSS region transcription start site region 39713
Tssr39714 4 136540944 to 136540967 23 + TSS region transcription start site region 39714
Kdm1a 4 136550540 to 136602723 52183 - protein coding gene lysine (K)-specific demethylase 1A
Tssr44036 4 136574056 to 136574106 50 - TSS region transcription start site region 44036
Gm12987 4 136584172 to 136584660 488 - pseudogene predicted gene 12987
Tssr44037 4 136593012 to 136593043 31 - TSS region transcription start site region 44037
Cpgi15114 4 136601910 to 136603033 1123 CpG island CpG island 15114
Tssr44038 4 136602577 to 136602602 25 - TSS region transcription start site region 44038
Tssr44039 4 136602609 to 136602616 7 - TSS region transcription start site region 44039
Tssr44040 4 136602619 to 136602634 15 - TSS region transcription start site region 44040
Tssr44041 4 136602641 to 136602760 119 - TSS region transcription start site region 44041
Tssr44042 4 136602776 to 136602798 22 - TSS region transcription start site region 44042
Gm12986 4 136608840 to 136609806 966 - pseudogene predicted gene 12986
Gm22180 4 136609806 to 136609864 58 - miRNA gene predicted gene, 22180
Tssr39715 4 136610431 to 136610451 20 + TSS region transcription start site region 39715
Tex46 4 136610437 to 136613226 2789 + protein coding gene testis expressed 46
Tssr39716 4 136622612 to 136622621 9 + TSS region transcription start site region 39716
Lactbl1 4 136622621 to 136639110 16489 + protein coding gene lactamase, beta-like 1
Tssr39717 4 136622631 to 136622652 21 + TSS region transcription start site region 39717
Cpgi15115 4 136637020 to 136638456 1436 CpG island CpG island 15115
Gm37583 4 136639582 to 136642068 2486 + unclassified gene predicted gene, 37583
Tssr39718 4 136640048 to 136640051 3 + TSS region transcription start site region 39718
Ephb2 4 136647539 to 136835988 188449 - protein coding gene Eph receptor B2
Tssr39719 4 136653232 to 136653243 11 + TSS region transcription start site region 39719
Bllact2 4 136674649 to 136674649 0 QTL base line locomotor activity 2
Tssr44043 4 136676137 to 136676140 3 - TSS region transcription start site region 44043
Tssr44044 4 136687990 to 136687999 9 - TSS region transcription start site region 44044
Tssr44045 4 136688008 to 136688019 11 - TSS region transcription start site region 44045
Tssr44046 4 136688036 to 136688043 7 - TSS region transcription start site region 44046
Tssr44047 4 136695615 to 136695628 13 - TSS region transcription start site region 44047