Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:135977935-136544903

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121 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pithd1 4 135975602 to 135987244 11642 - protein coding gene PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1
Cpgi15088 4 135986522 to 135987668 1146 CpG island CpG island 15088
Tssr44017 4 135987013 to 135987018 5 - TSS region transcription start site region 44017
Tssr44018 4 135987156 to 135987179 23 - TSS region transcription start site region 44018
Tssr44019 4 135987182 to 135987269 87 - TSS region transcription start site region 44019
Tssr44020 4 135988075 to 135988117 42 - TSS region transcription start site region 44020
Tssr39665 4 135997427 to 135997431 4 + TSS region transcription start site region 39665
Cpgi15089 4 135997433 to 135997637 204 CpG island CpG island 15089
Gm13007 4 135997523 to 135997887 364 + pseudogene predicted gene 13007
Eloa 4 136003370 to 136021649 18279 - protein coding gene elongin A
Gm13008 4 136003566 to 136010937 7371 + antisense lncRNA gene predicted gene 13008
Tssr44021 4 136005238 to 136005242 4 - TSS region transcription start site region 44021
Tssr44022 4 136010534 to 136010545 11 - TSS region transcription start site region 44022
Gm24362 4 136018071 to 136018486 415 - sense intronic lncRNA gene predicted gene, 24362
Cpgi15090 4 136020946 to 136022114 1168 CpG island CpG island 15090
Tssr44023 4 136021629 to 136021665 36 - TSS region transcription start site region 44023
Tssr44024 4 136021685 to 136021694 9 - TSS region transcription start site region 44024
Tssr44025 4 136021722 to 136021736 14 - TSS region transcription start site region 44025
Cpgi15091 4 136028335 to 136028511 176 CpG island CpG island 15091
Tssr44026 4 136028847 to 136028897 50 - TSS region transcription start site region 44026
Rpl11 4 136049947 to 136053371 3424 - protein coding gene ribosomal protein L11
Cpgi15092 4 136052439 to 136053546 1107 CpG island CpG island 15092
Tssr44027 4 136053343 to 136053415 72 - TSS region transcription start site region 44027
Cpgi15093 4 136069990 to 136070283 293 CpG island CpG island 15093
Cpgi15094 4 136071267 to 136071528 261 CpG island CpG island 15094
Gm13009 4 136074513 to 136074972 459 - pseudogene predicted gene 13009
Cpgi15095 4 136081638 to 136082277 639 CpG island CpG island 15095
Tssr39666 4 136081985 to 136082007 22 + TSS region transcription start site region 39666
Cpgi15096 4 136134929 to 136135619 690 CpG island CpG island 15096
Gm26001 4 136137496 to 136137598 102 + snRNA gene predicted gene, 26001
Gm42329 4 136138595 to 136143352 4757 - lncRNA gene predicted gene, 42329
Cpgi15097 4 136140303 to 136140672 369 CpG island CpG island 15097
Tssr1343 4 136140763 to 136140767 4 + TSS region transcription start site region 1343
Tssr44028 4 136142214 to 136142228 14 - TSS region transcription start site region 44028
Cpgi15098 4 136143580 to 136145154 1574 CpG island CpG island 15098
Tssr39667 4 136143816 to 136143832 16 + TSS region transcription start site region 39667
Id3 4 136143822 to 136145392 1570 + protein coding gene inhibitor of DNA binding 3
Tssr39668 4 136144772 to 136144804 32 + TSS region transcription start site region 39668
Tssr39669 4 136147221 to 136147248 27 + TSS region transcription start site region 39669
Cpgi15099 4 136147533 to 136148704 1171 CpG island CpG island 15099
Cpgi15100 4 136171953 to 136173417 1464 CpG island CpG island 15100
Tssr39670 4 136172266 to 136172288 22 + TSS region transcription start site region 39670
Tssr44029 4 136172318 to 136172323 5 - TSS region transcription start site region 44029
Tssr39671 4 136172367 to 136172395 28 + TSS region transcription start site region 39671
E2f2 4 136172394 to 136196057 23663 + protein coding gene E2F transcription factor 2
Tssr39672 4 136172396 to 136172427 31 + TSS region transcription start site region 39672
Tssr39673 4 136172428 to 136172442 14 + TSS region transcription start site region 39673
Tssr39674 4 136172558 to 136172579 21 + TSS region transcription start site region 39674
Tssr44030 4 136172601 to 136172604 3 - TSS region transcription start site region 44030
Tssr39675 4 136172666 to 136172753 87 + TSS region transcription start site region 39675
Tssr39676 4 136172850 to 136172860 10 + TSS region transcription start site region 39676
Tssr39677 4 136172945 to 136172956 11 + TSS region transcription start site region 39677
Tssr44031 4 136173038 to 136173047 9 - TSS region transcription start site region 44031
Tssr39678 4 136173167 to 136173178 11 + TSS region transcription start site region 39678
Tssr39679 4 136177936 to 136177957 21 + TSS region transcription start site region 39679
Tssr39680 4 136178212 to 136178235 23 + TSS region transcription start site region 39680
Tssr39681 4 136178240 to 136178253 13 + TSS region transcription start site region 39681
Tssr39682 4 136178273 to 136178286 13 + TSS region transcription start site region 39682
Cpgi15101 4 136180068 to 136180507 439 CpG island CpG island 15101
Tssr39683 4 136180198 to 136180211 13 + TSS region transcription start site region 39683
Tssr44032 4 136180501 to 136180514 13 - TSS region transcription start site region 44032
Tssr44033 4 136180529 to 136180540 11 - TSS region transcription start site region 44033
Tssr44034 4 136180548 to 136180571 23 - TSS region transcription start site region 44034
Tssr39684 4 136180775 to 136180790 15 + TSS region transcription start site region 39684
Tssr39685 4 136180792 to 136180809 17 + TSS region transcription start site region 39685
Tssr39686 4 136181143 to 136181164 21 + TSS region transcription start site region 39686
Tssr39687 4 136189499 to 136189502 3 + TSS region transcription start site region 39687
Tssr39688 4 136192908 to 136192920 12 + TSS region transcription start site region 39688
Cpgi15102 4 136206014 to 136206765 751 CpG island CpG island 15102
Asap3 4 136206365 to 136245216 38851 + protein coding gene ArfGAP with SH3 domain, ankyrin repeat and PH domain 3
Tssr39689 4 136206379 to 136206405 26 + TSS region transcription start site region 39689
Tssr39690 4 136206411 to 136206454 43 + TSS region transcription start site region 39690
D230019A03Rik 4 136214468 to 136216550 2082 unclassified gene RIKEN cDNA D230019A03 gene
Cpgi15103 4 136218747 to 136218916 169 CpG island CpG island 15103
Cpgi15104 4 136238383 to 136238714 331 CpG island CpG island 15104
Cpgi15105 4 136247683 to 136248842 1159 CpG island CpG island 15105
Tssr39691 4 136247932 to 136248011 79 + TSS region transcription start site region 39691
Tcea3 4 136247935 to 136274903 26968 + protein coding gene transcription elongation factor A (SII), 3
Tssr39692 4 136248017 to 136248028 11 + TSS region transcription start site region 39692
Cpgi15106 4 136249234 to 136249500 266 CpG island CpG island 15106
Tssr44035 4 136249940 to 136249943 3 - TSS region transcription start site region 44035
Tssr39693 4 136270997 to 136271046 49 + TSS region transcription start site region 39693
Tssr39694 4 136284637 to 136284652 15 + TSS region transcription start site region 39694
Tssr39695 4 136284658 to 136284686 28 + TSS region transcription start site region 39695
Zfp46 4 136284683 to 136293942 9259 + protein coding gene zinc finger protein 46
Tssr39696 4 136284708 to 136284717 9 + TSS region transcription start site region 39696
Cpgi15107 4 136285820 to 136286533 713 CpG island CpG island 15107
Tssr39697 4 136286061 to 136286114 53 + TSS region transcription start site region 39697
Tssr39698 4 136286115 to 136286150 35 + TSS region transcription start site region 39698
Tssr39699 4 136286178 to 136286190 12 + TSS region transcription start site region 39699
Cpgi15108 4 136290107 to 136291167 1060 CpG island CpG island 15108
Gm13013 4 136307364 to 136307886 522 - pseudogene predicted gene 13013
Cpgi15109 4 136310284 to 136311759 1475 CpG island CpG island 15109
Tssr39700 4 136310936 to 136310947 11 + TSS region transcription start site region 39700
Hnrnpr 4 136310942 to 136345981 35039 + protein coding gene heterogeneous nuclear ribonucleoprotein R
Tssr39701 4 136310952 to 136310984 32 + TSS region transcription start site region 39701
Tssr39702 4 136310991 to 136311054 63 + TSS region transcription start site region 39702
Tssr39703 4 136332453 to 136332459 6 + TSS region transcription start site region 39703
Tssr39704 4 136332537 to 136332583 46 + TSS region transcription start site region 39704
Tssr39705 4 136347309 to 136347312 3 + TSS region transcription start site region 39705
Gm27022 4 136347847 to 136349441 1594 - lincRNA gene predicted gene, 27022
9130020K20Rik 4 136350334 to 136359447 9113 + lncRNA gene RIKEN cDNA 9130020K20 gene
Tssr39706 4 136357423 to 136357432 9 + TSS region transcription start site region 39706
D4Mit69 4 136361074 to 136361203 129 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 69
D4Dcr29 4 136361089 to 136361191 102 DNA segment DNA Segment, Chr 4, Derry C. Roopenian 29
Gm31295 4 136387466 to 136388993 1527 + lncRNA gene predicted gene, 31295
Htr1d 4 136423524 to 136444398 20874 + protein coding gene 5-hydroxytryptamine (serotonin) receptor 1D
Tssr39707 4 136424056 to 136424067 11 + TSS region transcription start site region 39707
Cpgi15110 4 136424252 to 136425279 1027 CpG island CpG island 15110
Tssr39708 4 136424574 to 136424590 16 + TSS region transcription start site region 39708
Cpgi15111 4 136442805 to 136443157 352 CpG island CpG island 15111
Cpgi15112 4 136462056 to 136462959 903 CpG island CpG island 15112
6030445D17Rik 4 136462250 to 136463977 1727 + unclassified gene RIKEN cDNA 6030445D17 gene
Tssr39709 4 136462582 to 136462623 41 + TSS region transcription start site region 39709
Cpgi15113 4 136469440 to 136470890 1450 CpG island CpG island 15113
Luzp1 4 136469749 to 136554725 84976 + protein coding gene leucine zipper protein 1
Tssr39710 4 136469755 to 136469815 60 + TSS region transcription start site region 39710
Tssr39711 4 136479872 to 136479877 5 + TSS region transcription start site region 39711
Tssr39712 4 136495597 to 136495601 4 + TSS region transcription start site region 39712
Tssr39713 4 136538259 to 136538296 37 + TSS region transcription start site region 39713
Tssr39714 4 136540944 to 136540967 23 + TSS region transcription start site region 39714