Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:135481655-135775198

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52 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nipal3 4 135447136 to 135494812 47676 - protein coding gene NIPA-like domain containing 3
Cpgi15073 4 135493852 to 135494184 332 CpG island CpG island 15073
Cpgi15074 4 135494445 to 135495293 848 CpG island CpG island 15074
Tssr43992 4 135494459 to 135494494 35 - TSS region transcription start site region 43992
Tssr43993 4 135494499 to 135494583 84 - TSS region transcription start site region 43993
Tssr43994 4 135494615 to 135494628 13 - TSS region transcription start site region 43994
Stpg1 4 135494886 to 135537803 42917 + protein coding gene sperm tail PG rich repeat containing 1
Tssr39617 4 135495952 to 135495959 7 + TSS region transcription start site region 39617
Tssr39618 4 135495962 to 135495967 5 + TSS region transcription start site region 39618
Tssr39619 4 135495969 to 135495974 5 + TSS region transcription start site region 39619
Tssr39620 4 135495979 to 135496016 37 + TSS region transcription start site region 39620
Tssr43995 4 135507610 to 135507622 12 - TSS region transcription start site region 43995
Gm25317 4 135512351 to 135512479 128 - miRNA gene predicted gene, 25317
D4Mit157 4 135538850 to 135538987 137 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 157
Grhl3 4 135541887 to 135573625 31738 - protein coding gene grainyhead like transcription factor 3
Tssr39621 4 135545230 to 135545242 12 + TSS region transcription start site region 39621
Cpgi15075 4 135570333 to 135570594 261 CpG island CpG island 15075
Cpgi15076 4 135573224 to 135573714 490 CpG island CpG island 15076
Tssr43996 4 135573532 to 135573552 20 - TSS region transcription start site region 43996
Gm30888 4 135573580 to 135580174 6594 + lncRNA gene predicted gene, 30888
Tssr43997 4 135573623 to 135573643 20 - TSS region transcription start site region 43997
Tssr39622 4 135578730 to 135578743 13 + TSS region transcription start site region 39622
Gm23106 4 135583748 to 135583848 100 + snRNA gene predicted gene, 23106
Tssr1338 4 135612367 to 135612369 2 - TSS region transcription start site region 1338
Tssr43998 4 135615511 to 135615548 37 - TSS region transcription start site region 43998
1700029M20Rik 4 135626655 to 135630198 3543 + lincRNA gene RIKEN cDNA 1700029M20 gene
Tssr39623 4 135626690 to 135626701 11 + TSS region transcription start site region 39623
Tssr39624 4 135626702 to 135626711 9 + TSS region transcription start site region 39624
Tssr39625 4 135626731 to 135626741 10 + TSS region transcription start site region 39625
Tssr39626 4 135626762 to 135626806 44 + TSS region transcription start site region 39626
Cpgi15077 4 135626780 to 135626997 217 CpG island CpG island 15077
Tssr39627 4 135626812 to 135626832 20 + TSS region transcription start site region 39627
Gm30941 4 135650254 to 135654000 3746 - lncRNA gene predicted gene, 30941
Tssr39628 4 135686036 to 135686054 18 + TSS region transcription start site region 39628
Cpgi15078 4 135686094 to 135686685 591 CpG island CpG island 15078
Tssr39629 4 135686196 to 135686240 44 + TSS region transcription start site region 39629
Tssr39630 4 135686282 to 135686301 19 + TSS region transcription start site region 39630
Tssr39631 4 135686455 to 135686496 41 + TSS region transcription start site region 39631
Ifnlr1 4 135686457 to 135708181 21724 + protein coding gene interferon lambda receptor 1
Gm12989 4 135715868 to 135716598 730 - pseudogene predicted gene 12989
Cpgi15079 4 135727056 to 135727293 237 CpG island CpG island 15079
Tssr39632 4 135728116 to 135728190 74 + TSS region transcription start site region 39632
Il22ra1 4 135728172 to 135752140 23968 + protein coding gene interleukin 22 receptor, alpha 1
D4Mit134 4 135736871 to 135737020 149 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 134
Tssr39633 4 135752177 to 135752182 5 + TSS region transcription start site region 39633
Gm12988 4 135756218 to 135756695 477 - pseudogene predicted gene 12988
Tssr1339 4 135756776 to 135756780 4 - TSS region transcription start site region 1339
Tssr39634 4 135759705 to 135759720 15 + TSS region transcription start site region 39634
Myom3 4 135759715 to 135815564 55849 + protein coding gene myomesin family, member 3
Tssr39635 4 135759723 to 135759737 14 + TSS region transcription start site region 39635
Tssr39636 4 135759754 to 135759759 5 + TSS region transcription start site region 39636
Cpgi15080 4 135762467 to 135762754 287 CpG island CpG island 15080