Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:135332177-136172182

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188 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Srrm1 4 135320484 to 135353253 32769 - protein coding gene serine/arginine repetitive matrix 1
Tssr43982 4 135334213 to 135334218 5 - TSS region transcription start site region 43982
Tssr39609 4 135337767 to 135337770 3 + TSS region transcription start site region 39609
Tssr39610 4 135337784 to 135337793 9 + TSS region transcription start site region 39610
Tssr39611 4 135337798 to 135337805 7 + TSS region transcription start site region 39611
Tssr43983 4 135337909 to 135337922 13 - TSS region transcription start site region 43983
Tssr43984 4 135338064 to 135338078 14 - TSS region transcription start site region 43984
Cpgi15070 4 135352266 to 135353807 1541 CpG island CpG island 15070
Tssr43985 4 135353126 to 135353157 31 - TSS region transcription start site region 43985
Tssr43986 4 135353164 to 135353177 13 - TSS region transcription start site region 43986
Tssr43987 4 135353625 to 135353628 3 - TSS region transcription start site region 43987
Tssr39612 4 135357725 to 135357734 9 + TSS region transcription start site region 39612
Ncmap 4 135369576 to 135398227 28651 - protein coding gene noncompact myelin associated protein
Tssr39613 4 135377112 to 135377137 25 + TSS region transcription start site region 39613
Gm12991 4 135377158 to 135377235 77 + pseudogene predicted gene 12991
Tssr43988 4 135380765 to 135380779 14 - TSS region transcription start site region 43988
Tssr43989 4 135380811 to 135380839 28 - TSS region transcription start site region 43989
Cpgi15071 4 135397737 to 135398499 762 CpG island CpG island 15071
Tssr39614 4 135398313 to 135398335 22 + TSS region transcription start site region 39614
Gm12990 4 135403189 to 135403656 467 - pseudogene predicted gene 12990
Rcan3 4 135412308 to 135433853 21545 - protein coding gene regulator of calcineurin 3
Mir700 4 135416555 to 135416633 78 - miRNA gene microRNA 700
Gm30822 4 135420678 to 135427794 7116 + lncRNA gene predicted gene, 30822
Tssr43990 4 135428712 to 135428721 9 - TSS region transcription start site region 43990
Gm15979 4 135430126 to 135430841 715 - sense intronic lncRNA gene predicted gene 15979
Cpgi15072 4 135433171 to 135434553 1382 CpG island CpG island 15072
Tssr43991 4 135433744 to 135433869 125 - TSS region transcription start site region 43991
Tssr39615 4 135434016 to 135434020 4 + TSS region transcription start site region 39615
Tssr39616 4 135439430 to 135439440 10 + TSS region transcription start site region 39616
Nipal3 4 135447136 to 135494812 47676 - protein coding gene NIPA-like domain containing 3
Gm37270 4 135450881 to 135451210 329 + unclassified gene predicted gene, 37270
Cpgi15073 4 135493852 to 135494184 332 CpG island CpG island 15073
Cpgi15074 4 135494445 to 135495293 848 CpG island CpG island 15074
Tssr43992 4 135494459 to 135494494 35 - TSS region transcription start site region 43992
Tssr43993 4 135494499 to 135494583 84 - TSS region transcription start site region 43993
Tssr43994 4 135494615 to 135494628 13 - TSS region transcription start site region 43994
Stpg1 4 135494886 to 135537803 42917 + protein coding gene sperm tail PG rich repeat containing 1
Tssr39617 4 135495952 to 135495959 7 + TSS region transcription start site region 39617
Tssr39618 4 135495962 to 135495967 5 + TSS region transcription start site region 39618
Tssr39619 4 135495969 to 135495974 5 + TSS region transcription start site region 39619
Tssr39620 4 135495979 to 135496016 37 + TSS region transcription start site region 39620
Tssr43995 4 135507610 to 135507622 12 - TSS region transcription start site region 43995
Gm25317 4 135512351 to 135512479 128 - miRNA gene predicted gene, 25317
D4Mit157 4 135538850 to 135538987 137 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 157
Grhl3 4 135541887 to 135573625 31738 - protein coding gene grainyhead like transcription factor 3
Tssr39621 4 135545230 to 135545242 12 + TSS region transcription start site region 39621
Cpgi15075 4 135570333 to 135570594 261 CpG island CpG island 15075
Cpgi15076 4 135573224 to 135573714 490 CpG island CpG island 15076
Tssr43996 4 135573532 to 135573552 20 - TSS region transcription start site region 43996
Gm30888 4 135573580 to 135580174 6594 + lncRNA gene predicted gene, 30888
Tssr43997 4 135573623 to 135573643 20 - TSS region transcription start site region 43997
Tssr39622 4 135578730 to 135578743 13 + TSS region transcription start site region 39622
Gm23106 4 135583748 to 135583848 100 + snRNA gene predicted gene, 23106
Tssr1338 4 135612367 to 135612369 2 - TSS region transcription start site region 1338
Tssr43998 4 135615511 to 135615548 37 - TSS region transcription start site region 43998
1700029M20Rik 4 135626655 to 135630198 3543 + lincRNA gene RIKEN cDNA 1700029M20 gene
Tssr39623 4 135626690 to 135626701 11 + TSS region transcription start site region 39623
Tssr39624 4 135626702 to 135626711 9 + TSS region transcription start site region 39624
Tssr39625 4 135626731 to 135626741 10 + TSS region transcription start site region 39625
Tssr39626 4 135626762 to 135626806 44 + TSS region transcription start site region 39626
Cpgi15077 4 135626780 to 135626997 217 CpG island CpG island 15077
Tssr39627 4 135626812 to 135626832 20 + TSS region transcription start site region 39627
Gm30941 4 135650254 to 135654000 3746 - lncRNA gene predicted gene, 30941
Tssr39628 4 135686036 to 135686054 18 + TSS region transcription start site region 39628
Cpgi15078 4 135686094 to 135686685 591 CpG island CpG island 15078
Tssr39629 4 135686196 to 135686240 44 + TSS region transcription start site region 39629
Tssr39630 4 135686282 to 135686301 19 + TSS region transcription start site region 39630
Tssr39631 4 135686455 to 135686496 41 + TSS region transcription start site region 39631
Ifnlr1 4 135686457 to 135708181 21724 + protein coding gene interferon lambda receptor 1
Gm12989 4 135715868 to 135716598 730 - pseudogene predicted gene 12989
Cpgi15079 4 135727056 to 135727293 237 CpG island CpG island 15079
Tssr39632 4 135728116 to 135728190 74 + TSS region transcription start site region 39632
Il22ra1 4 135728172 to 135752140 23968 + protein coding gene interleukin 22 receptor, alpha 1
D4Mit134 4 135736871 to 135737020 149 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 134
Tssr39633 4 135752177 to 135752182 5 + TSS region transcription start site region 39633
Gm12988 4 135756218 to 135756695 477 - pseudogene predicted gene 12988
Tssr1339 4 135756776 to 135756780 4 - TSS region transcription start site region 1339
Tssr39634 4 135759705 to 135759720 15 + TSS region transcription start site region 39634
Myom3 4 135759715 to 135815564 55849 + protein coding gene myomesin family, member 3
Tssr39635 4 135759723 to 135759737 14 + TSS region transcription start site region 39635
Tssr39636 4 135759754 to 135759759 5 + TSS region transcription start site region 39636
Cpgi15080 4 135762467 to 135762754 287 CpG island CpG island 15080
Cpgi15081 4 135798313 to 135798607 294 CpG island CpG island 15081
Tssr39637 4 135803087 to 135803096 9 + TSS region transcription start site region 39637
Gm13000 4 135853678 to 135854173 495 + pseudogene predicted gene 13000
Cpgi15082 4 135855434 to 135857080 1646 CpG island CpG island 15082
Tssr39638 4 135855707 to 135855744 37 + TSS region transcription start site region 39638
Srsf10 4 135855747 to 135869908 14161 + protein coding gene serine/arginine-rich splicing factor 10
Tssr43999 4 135855869 to 135855897 28 - TSS region transcription start site region 43999
Tssr39639 4 135856087 to 135856124 37 + TSS region transcription start site region 39639
Tssr39640 4 135856128 to 135856160 32 + TSS region transcription start site region 39640
Tssr39641 4 135856242 to 135856251 9 + TSS region transcription start site region 39641
Tssr39642 4 135856636 to 135856680 44 + TSS region transcription start site region 39642
Tssr39643 4 135857886 to 135857890 4 + TSS region transcription start site region 39643
Tssr39644 4 135859200 to 135859205 5 + TSS region transcription start site region 39644
Tssr39645 4 135861763 to 135861765 2 + TSS region transcription start site region 39645
Tssr39646 4 135862961 to 135862965 4 + TSS region transcription start site region 39646
Tssr39647 4 135868625 to 135868638 13 + TSS region transcription start site region 39647
Tssr39648 4 135870402 to 135870403 1 + TSS region transcription start site region 39648
Pnrc2 4 135870917 to 135873846 2929 - protein coding gene proline-rich nuclear receptor coactivator 2
Cpgi15083 4 135873333 to 135874230 897 CpG island CpG island 15083
Tssr44000 4 135873546 to 135873606 60 - TSS region transcription start site region 44000
Tssr1340 4 135873751 to 135873758 7 - TSS region transcription start site region 1340
Tssr44001 4 135873787 to 135873798 11 - TSS region transcription start site region 44001
Tssr44002 4 135873801 to 135873853 52 - TSS region transcription start site region 44002
Tssr44003 4 135873857 to 135873869 12 - TSS region transcription start site region 44003
Tssr44004 4 135874073 to 135874078 5 - TSS region transcription start site region 44004
Tssr44005 4 135876413 to 135876423 10 - TSS region transcription start site region 44005
Tssr39649 4 135876927 to 135876940 13 + TSS region transcription start site region 39649
Gm13006 4 135891264 to 135891477 213 - pseudogene predicted gene 13006
Tssr39650 4 135895180 to 135895195 15 + TSS region transcription start site region 39650
Tssr39651 4 135895384 to 135895396 12 + TSS region transcription start site region 39651
Cnr2 4 135895394 to 135920207 24813 + protein coding gene cannabinoid receptor 2 (macrophage)
Tssr39652 4 135895414 to 135895476 62 + TSS region transcription start site region 39652
Tssr44006 4 135898482 to 135898496 14 - TSS region transcription start site region 44006
Tssr1341 4 135898640 to 135898656 16 + TSS region transcription start site region 1341
Tssr39653 4 135911675 to 135911687 12 + TSS region transcription start site region 39653
Tssr39654 4 135911808 to 135911826 18 + TSS region transcription start site region 39654
Tssr39655 4 135911851 to 135911883 32 + TSS region transcription start site region 39655
Cpgi15084 4 135920581 to 135921527 946 CpG island CpG island 15084
Fuca1 4 135920726 to 135940300 19574 + protein coding gene fucosidase, alpha-L- 1, tissue
Tssr39656 4 135920731 to 135920801 70 + TSS region transcription start site region 39656
Tssr39657 4 135929754 to 135929777 23 + TSS region transcription start site region 39657
Tssr39658 4 135929797 to 135929810 13 + TSS region transcription start site region 39658
Tssr39659 4 135932351 to 135932355 4 + TSS region transcription start site region 39659
Cpgi15085 4 135946275 to 135947292 1017 CpG island CpG island 15085
Tssr44007 4 135946365 to 135946382 17 - TSS region transcription start site region 44007
Tssr39660 4 135946447 to 135946495 48 + TSS region transcription start site region 39660
Hmgcl 4 135946449 to 135962617 16168 + protein coding gene 3-hydroxy-3-methylglutaryl-Coenzyme A lyase
Tssr39661 4 135948416 to 135948427 11 + TSS region transcription start site region 39661
Tssr1342 4 135958569 to 135958604 35 + TSS region transcription start site region 1342
Cpgi15086 4 135963178 to 135964615 1437 CpG island CpG island 15086
Tssr39662 4 135963720 to 135963733 13 + TSS region transcription start site region 39662
Gale 4 135963727 to 135968178 4451 + protein coding gene galactose-4-epimerase, UDP
Tssr39663 4 135963742 to 135963760 18 + TSS region transcription start site region 39663
Lypla2 4 135968224 to 135972594 4370 - protein coding gene lysophospholipase 2
Tssr39664 4 135968658 to 135968660 2 + TSS region transcription start site region 39664
Tssr44008 4 135969485 to 135969508 23 - TSS region transcription start site region 44008
Tssr44009 4 135970073 to 135970089 16 - TSS region transcription start site region 44009
Tssr44010 4 135971894 to 135971908 14 - TSS region transcription start site region 44010
Cpgi15087 4 135972180 to 135972983 803 CpG island CpG island 15087
Tssr44011 4 135972548 to 135972567 19 - TSS region transcription start site region 44011
Tssr44012 4 135972574 to 135972618 44 - TSS region transcription start site region 44012
Tssr44013 4 135972620 to 135972631 11 - TSS region transcription start site region 44013
Tssr44014 4 135973493 to 135973516 23 - TSS region transcription start site region 44014
Tssr44015 4 135973522 to 135973531 9 - TSS region transcription start site region 44015
Tssr44016 4 135973638 to 135973683 45 - TSS region transcription start site region 44016
Pithd1 4 135975602 to 135987244 11642 - protein coding gene PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1
Cpgi15088 4 135986522 to 135987668 1146 CpG island CpG island 15088
Tssr44017 4 135987013 to 135987018 5 - TSS region transcription start site region 44017
Tssr44018 4 135987156 to 135987179 23 - TSS region transcription start site region 44018
Tssr44019 4 135987182 to 135987269 87 - TSS region transcription start site region 44019
Tssr44020 4 135988075 to 135988117 42 - TSS region transcription start site region 44020
Tssr39665 4 135997427 to 135997431 4 + TSS region transcription start site region 39665
Cpgi15089 4 135997433 to 135997637 204 CpG island CpG island 15089
Gm13007 4 135997523 to 135997887 364 + pseudogene predicted gene 13007
Eloa 4 136003370 to 136021649 18279 - protein coding gene elongin A
Gm13008 4 136003566 to 136010937 7371 + antisense lncRNA gene predicted gene 13008
Tssr44021 4 136005238 to 136005242 4 - TSS region transcription start site region 44021
Tssr44022 4 136010534 to 136010545 11 - TSS region transcription start site region 44022
Gm24362 4 136018071 to 136018486 415 - sense intronic lncRNA gene predicted gene, 24362
Cpgi15090 4 136020946 to 136022114 1168 CpG island CpG island 15090
Tssr44023 4 136021629 to 136021665 36 - TSS region transcription start site region 44023
Tssr44024 4 136021685 to 136021694 9 - TSS region transcription start site region 44024
Tssr44025 4 136021722 to 136021736 14 - TSS region transcription start site region 44025
Cpgi15091 4 136028335 to 136028511 176 CpG island CpG island 15091
Tssr44026 4 136028847 to 136028897 50 - TSS region transcription start site region 44026
Rpl11 4 136049947 to 136053371 3424 - protein coding gene ribosomal protein L11
Cpgi15092 4 136052439 to 136053546 1107 CpG island CpG island 15092
Tssr44027 4 136053343 to 136053415 72 - TSS region transcription start site region 44027
Cpgi15093 4 136069990 to 136070283 293 CpG island CpG island 15093
Cpgi15094 4 136071267 to 136071528 261 CpG island CpG island 15094
Gm13009 4 136074513 to 136074972 459 - pseudogene predicted gene 13009
Cpgi15095 4 136081638 to 136082277 639 CpG island CpG island 15095
Tssr39666 4 136081985 to 136082007 22 + TSS region transcription start site region 39666
Cpgi15096 4 136134929 to 136135619 690 CpG island CpG island 15096
Gm26001 4 136137496 to 136137598 102 + snRNA gene predicted gene, 26001
Gm42329 4 136138595 to 136143352 4757 - lncRNA gene predicted gene, 42329
Cpgi15097 4 136140303 to 136140672 369 CpG island CpG island 15097
Tssr1343 4 136140763 to 136140767 4 + TSS region transcription start site region 1343
Tssr44028 4 136142214 to 136142228 14 - TSS region transcription start site region 44028
Cpgi15098 4 136143580 to 136145154 1574 CpG island CpG island 15098
Tssr39667 4 136143816 to 136143832 16 + TSS region transcription start site region 39667
Id3 4 136143822 to 136145392 1570 + protein coding gene inhibitor of DNA binding 3
Tssr39668 4 136144772 to 136144804 32 + TSS region transcription start site region 39668
Tssr39669 4 136147221 to 136147248 27 + TSS region transcription start site region 39669
Cpgi15099 4 136147533 to 136148704 1171 CpG island CpG island 15099
Cpgi15100 4 136171953 to 136173417 1464 CpG island CpG island 15100