Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:134951822-135481834

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101 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi15056 4 134963177 to 134963406 229 CpG island CpG island 15056
Cpgi15057 4 134968648 to 134968803 155 CpG island CpG island 15057
Cpgi15058 4 135025727 to 135026042 315 CpG island CpG island 15058
Gm42327 4 135043698 to 135051367 7669 - lncRNA gene predicted gene, 42327
Cpgi15059 4 135053676 to 135053912 236 CpG island CpG island 15059
Tssr1336 4 135069599 to 135069613 14 - TSS region transcription start site region 1336
Tssr43948 4 135073570 to 135073574 4 - TSS region transcription start site region 43948
Gm16225 4 135118221 to 135120447 2226 - lincRNA gene predicted gene 16225
Tssr43949 4 135120466 to 135120504 38 - TSS region transcription start site region 43949
Tssr39600 4 135120640 to 135120660 20 + TSS region transcription start site region 39600
Runx3 4 135120652 to 135177990 57338 + protein coding gene runt related transcription factor 3
Tssr39601 4 135120923 to 135120934 11 + TSS region transcription start site region 39601
Tssr43950 4 135131214 to 135131246 32 - TSS region transcription start site region 43950
Cpgi15060 4 135140711 to 135141026 315 CpG island CpG island 15060
Gm16224 4 135143421 to 135144285 864 - antisense lncRNA gene predicted gene 16224
Cpgi15061 4 135150423 to 135150986 563 CpG island CpG island 15061
Cpgi15062 4 135151278 to 135151545 267 CpG island CpG island 15062
Cpgi15063 4 135151829 to 135154013 2184 CpG island CpG island 15063
Tssr1337 4 135152273 to 135152293 20 + TSS region transcription start site region 1337
Tssr39602 4 135152536 to 135152554 18 + TSS region transcription start site region 39602
Tssr39603 4 135152702 to 135152748 46 + TSS region transcription start site region 39603
Tssr39604 4 135152994 to 135153024 30 + TSS region transcription start site region 39604
Cpgi15064 4 135155191 to 135155597 406 CpG island CpG island 15064
Cpgi15065 4 135175214 to 135175883 669 CpG island CpG island 15065
Tssr39605 4 135176105 to 135176127 22 + TSS region transcription start site region 39605
Cpgi15066 4 135201884 to 135202142 258 CpG island CpG island 15066
Cpgi15067 4 135205959 to 135206643 684 CpG island CpG island 15067
Tssr43951 4 135211815 to 135211820 5 - TSS region transcription start site region 43951
Clic4 4 135213969 to 135272760 58791 - protein coding gene chloride intracellular channel 4 (mitochondrial)
Tssr43952 4 135214491 to 135214504 13 - TSS region transcription start site region 43952
Tssr43953 4 135214506 to 135214519 13 - TSS region transcription start site region 43953
Tssr43954 4 135214528 to 135214546 18 - TSS region transcription start site region 43954
Tssr43955 4 135216383 to 135216396 13 - TSS region transcription start site region 43955
Tssr43956 4 135216411 to 135216427 16 - TSS region transcription start site region 43956
Tssr43957 4 135216662 to 135216677 15 - TSS region transcription start site region 43957
Tssr43958 4 135216793 to 135216813 20 - TSS region transcription start site region 43958
Tssr43959 4 135216822 to 135216834 12 - TSS region transcription start site region 43959
Tssr43960 4 135216975 to 135216986 11 - TSS region transcription start site region 43960
Tssr43961 4 135217029 to 135217045 16 - TSS region transcription start site region 43961
Tssr43962 4 135217060 to 135217091 31 - TSS region transcription start site region 43962
Tssr43963 4 135217135 to 135217150 15 - TSS region transcription start site region 43963
Tssr43964 4 135217254 to 135217262 8 - TSS region transcription start site region 43964
Tssr43965 4 135218612 to 135218654 42 - TSS region transcription start site region 43965
Tssr39606 4 135226073 to 135226085 12 + TSS region transcription start site region 39606
Tssr43966 4 135226092 to 135226153 61 - TSS region transcription start site region 43966
Tssr43967 4 135257685 to 135257689 4 - TSS region transcription start site region 43967
Tssr43968 4 135260352 to 135260377 25 - TSS region transcription start site region 43968
Tssr43969 4 135264021 to 135264048 27 - TSS region transcription start site region 43969
Tssr43970 4 135264205 to 135264216 11 - TSS region transcription start site region 43970
Tssr43971 4 135266774 to 135266787 13 - TSS region transcription start site region 43971
Tssr43972 4 135271163 to 135271168 5 - TSS region transcription start site region 43972
Cpgi15068 4 135271897 to 135273623 1726 CpG island CpG island 15068
Tssr39607 4 135272173 to 135272182 9 + TSS region transcription start site region 39607
Tssr43973 4 135272706 to 135272717 11 - TSS region transcription start site region 43973
Tssr43974 4 135272734 to 135272747 13 - TSS region transcription start site region 43974
Tssr43975 4 135272754 to 135272773 19 - TSS region transcription start site region 43975
Tssr43976 4 135272781 to 135272792 11 - TSS region transcription start site region 43976
Tssr43977 4 135272798 to 135272819 21 - TSS region transcription start site region 43977
Gm30767 4 135283067 to 135289144 6077 + lncRNA gene predicted gene, 30767
Gm12983 4 135290366 to 135290675 309 - pseudogene predicted gene 12983
Cpgi15069 4 135292534 to 135292701 167 CpG island CpG island 15069
Gm30701 4 135296609 to 135299416 2807 - lncRNA gene predicted gene, 30701
Tssr43978 4 135300228 to 135300261 33 - TSS region transcription start site region 43978
Gm12984 4 135307349 to 135309519 2170 + antisense lncRNA gene predicted gene 12984
Gm12982 4 135307781 to 135307970 189 - pseudogene predicted gene 12982
D4Ertd264e 4 135310866 to 135311107 241 DNA segment DNA segment, Chr 4, ERATO Doi 264, expressed
Tssr39608 4 135312961 to 135312986 25 + TSS region transcription start site region 39608
Srrm1 4 135320484 to 135353253 32769 - protein coding gene serine/arginine repetitive matrix 1
Tssr43979 4 135325171 to 135325188 17 - TSS region transcription start site region 43979
Tssr43980 4 135325317 to 135325327 10 - TSS region transcription start site region 43980
Tssr43981 4 135325970 to 135325976 6 - TSS region transcription start site region 43981
Tssr43982 4 135334213 to 135334218 5 - TSS region transcription start site region 43982
Tssr39609 4 135337767 to 135337770 3 + TSS region transcription start site region 39609
Tssr39610 4 135337784 to 135337793 9 + TSS region transcription start site region 39610
Tssr39611 4 135337798 to 135337805 7 + TSS region transcription start site region 39611
Tssr43983 4 135337909 to 135337922 13 - TSS region transcription start site region 43983
Tssr43984 4 135338064 to 135338078 14 - TSS region transcription start site region 43984
Cpgi15070 4 135352266 to 135353807 1541 CpG island CpG island 15070
Tssr43985 4 135353126 to 135353157 31 - TSS region transcription start site region 43985
Tssr43986 4 135353164 to 135353177 13 - TSS region transcription start site region 43986
Tssr43987 4 135353625 to 135353628 3 - TSS region transcription start site region 43987
Tssr39612 4 135357725 to 135357734 9 + TSS region transcription start site region 39612
Ncmap 4 135369576 to 135398227 28651 - protein coding gene noncompact myelin associated protein
Tssr39613 4 135377112 to 135377137 25 + TSS region transcription start site region 39613
Gm12991 4 135377158 to 135377235 77 + pseudogene predicted gene 12991
Tssr43988 4 135380765 to 135380779 14 - TSS region transcription start site region 43988
Tssr43989 4 135380811 to 135380839 28 - TSS region transcription start site region 43989
Cpgi15071 4 135397737 to 135398499 762 CpG island CpG island 15071
Tssr39614 4 135398313 to 135398335 22 + TSS region transcription start site region 39614
Gm12990 4 135403189 to 135403656 467 - pseudogene predicted gene 12990
Rcan3 4 135412308 to 135433853 21545 - protein coding gene regulator of calcineurin 3
Mir700 4 135416555 to 135416633 78 - miRNA gene microRNA 700
Gm30822 4 135420678 to 135427794 7116 + lncRNA gene predicted gene, 30822
Tssr43990 4 135428712 to 135428721 9 - TSS region transcription start site region 43990
Gm15979 4 135430126 to 135430841 715 - sense intronic lncRNA gene predicted gene 15979
Cpgi15072 4 135433171 to 135434553 1382 CpG island CpG island 15072
Tssr43991 4 135433744 to 135433869 125 - TSS region transcription start site region 43991
Tssr39615 4 135434016 to 135434020 4 + TSS region transcription start site region 39615
Tssr39616 4 135439430 to 135439440 10 + TSS region transcription start site region 39616
Nipal3 4 135447136 to 135494812 47676 - protein coding gene NIPA-like domain containing 3
Gm37270 4 135450881 to 135451210 329 + unclassified gene predicted gene, 37270