Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:134919599-135219613

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70 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr39579 4 134922639 to 134922644 5 + TSS region transcription start site region 39579
Tssr39580 4 134923050 to 134923081 31 + TSS region transcription start site region 39580
Cpgi15053 4 134923274 to 134924664 1390 CpG island CpG island 15053
Tssr39581 4 134923589 to 134923593 4 + TSS region transcription start site region 39581
Tssr39582 4 134923616 to 134923628 12 + TSS region transcription start site region 39582
Rsrp1 4 134923625 to 134927370 3745 + protein coding gene arginine/serine rich protein 1
Tssr39583 4 134923979 to 134923999 20 + TSS region transcription start site region 39583
Tssr39584 4 134924024 to 134924065 41 + TSS region transcription start site region 39584
Tssr39585 4 134924072 to 134924099 27 + TSS region transcription start site region 39585
Tssr39586 4 134924204 to 134924221 17 + TSS region transcription start site region 39586
Tssr39587 4 134924258 to 134924289 31 + TSS region transcription start site region 39587
Tssr39588 4 134924358 to 134924375 17 + TSS region transcription start site region 39588
Tssr39589 4 134924382 to 134924400 18 + TSS region transcription start site region 39589
Tssr39590 4 134924416 to 134924427 11 + TSS region transcription start site region 39590
Tssr39591 4 134925457 to 134925467 10 + TSS region transcription start site region 39591
Tssr39592 4 134926068 to 134926073 5 + TSS region transcription start site region 39592
Tssr39593 4 134926590 to 134926603 13 + TSS region transcription start site region 39593
Tssr39594 4 134926675 to 134926690 15 + TSS region transcription start site region 39594
Tssr39595 4 134926702 to 134926730 28 + TSS region transcription start site region 39595
Tssr43947 4 134927368 to 134927371 3 - TSS region transcription start site region 43947
Cpgi15054 4 134930673 to 134931527 854 CpG island CpG island 15054
Tssr39596 4 134930899 to 134930910 11 + TSS region transcription start site region 39596
Tssr39597 4 134930918 to 134930929 11 + TSS region transcription start site region 39597
Tssr39598 4 134930946 to 134930997 51 + TSS region transcription start site region 39598
Syf2 4 134930980 to 134937537 6557 + protein coding gene SYF2 homolog, RNA splicing factor (S. cerevisiae)
Tssr39599 4 134931217 to 134931229 12 + TSS region transcription start site region 39599
Cpgi15055 4 134943986 to 134944187 201 CpG island CpG island 15055
Cpgi15056 4 134963177 to 134963406 229 CpG island CpG island 15056
Cpgi15057 4 134968648 to 134968803 155 CpG island CpG island 15057
Cpgi15058 4 135025727 to 135026042 315 CpG island CpG island 15058
Gm42327 4 135043698 to 135051367 7669 - lncRNA gene predicted gene, 42327
Cpgi15059 4 135053676 to 135053912 236 CpG island CpG island 15059
Tssr1336 4 135069599 to 135069613 14 - TSS region transcription start site region 1336
Tssr43948 4 135073570 to 135073574 4 - TSS region transcription start site region 43948
Gm16225 4 135118221 to 135120447 2226 - lincRNA gene predicted gene 16225
Tssr43949 4 135120466 to 135120504 38 - TSS region transcription start site region 43949
Tssr39600 4 135120640 to 135120660 20 + TSS region transcription start site region 39600
Runx3 4 135120652 to 135177990 57338 + protein coding gene runt related transcription factor 3
Tssr39601 4 135120923 to 135120934 11 + TSS region transcription start site region 39601
Tssr43950 4 135131214 to 135131246 32 - TSS region transcription start site region 43950
Cpgi15060 4 135140711 to 135141026 315 CpG island CpG island 15060
Gm16224 4 135143421 to 135144285 864 - antisense lncRNA gene predicted gene 16224
Cpgi15061 4 135150423 to 135150986 563 CpG island CpG island 15061
Cpgi15062 4 135151278 to 135151545 267 CpG island CpG island 15062
Cpgi15063 4 135151829 to 135154013 2184 CpG island CpG island 15063
Tssr1337 4 135152273 to 135152293 20 + TSS region transcription start site region 1337
Tssr39602 4 135152536 to 135152554 18 + TSS region transcription start site region 39602
Tssr39603 4 135152702 to 135152748 46 + TSS region transcription start site region 39603
Tssr39604 4 135152994 to 135153024 30 + TSS region transcription start site region 39604
Cpgi15064 4 135155191 to 135155597 406 CpG island CpG island 15064
Cpgi15065 4 135175214 to 135175883 669 CpG island CpG island 15065
Tssr39605 4 135176105 to 135176127 22 + TSS region transcription start site region 39605
Cpgi15066 4 135201884 to 135202142 258 CpG island CpG island 15066
Cpgi15067 4 135205959 to 135206643 684 CpG island CpG island 15067
Tssr43951 4 135211815 to 135211820 5 - TSS region transcription start site region 43951
Clic4 4 135213969 to 135272760 58791 - protein coding gene chloride intracellular channel 4 (mitochondrial)
Tssr43952 4 135214491 to 135214504 13 - TSS region transcription start site region 43952
Tssr43953 4 135214506 to 135214519 13 - TSS region transcription start site region 43953
Tssr43954 4 135214528 to 135214546 18 - TSS region transcription start site region 43954
Tssr43955 4 135216383 to 135216396 13 - TSS region transcription start site region 43955
Tssr43956 4 135216411 to 135216427 16 - TSS region transcription start site region 43956
Tssr43957 4 135216662 to 135216677 15 - TSS region transcription start site region 43957
Tssr43958 4 135216793 to 135216813 20 - TSS region transcription start site region 43958
Tssr43959 4 135216822 to 135216834 12 - TSS region transcription start site region 43959
Tssr43960 4 135216975 to 135216986 11 - TSS region transcription start site region 43960
Tssr43961 4 135217029 to 135217045 16 - TSS region transcription start site region 43961
Tssr43962 4 135217060 to 135217091 31 - TSS region transcription start site region 43962
Tssr43963 4 135217135 to 135217150 15 - TSS region transcription start site region 43963
Tssr43964 4 135217254 to 135217262 8 - TSS region transcription start site region 43964
Tssr43965 4 135218612 to 135218654 42 - TSS region transcription start site region 43965