Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:134283581-135123649

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177 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pdik1l 4 134275002 to 134287846 12844 - protein coding gene PDLIM1 interacting kinase 1 like
Cpgi15034 4 134286444 to 134288095 1651 CpG island CpG island 15034
Tssr43894 4 134287215 to 134287258 43 - TSS region transcription start site region 43894
D4Jcs21 4 134312212 to 134312548 336 DNA segment DNA segment, Chr 4, John C. Schimenti 21
Tssr39545 4 134315094 to 134315103 9 + TSS region transcription start site region 39545
Tssr39546 4 134315112 to 134315126 14 + TSS region transcription start site region 39546
Trim63 4 134315120 to 134329629 14509 + protein coding gene tripartite motif-containing 63
Tssr39547 4 134324897 to 134324910 13 + TSS region transcription start site region 39547
Gm13195 4 134335498 to 134335758 260 - pseudogene predicted gene 13195
Cpgi15035 4 134342922 to 134343788 866 CpG island CpG island 15035
Tssr39548 4 134343143 to 134343154 11 + TSS region transcription start site region 39548
Slc30a2 4 134343181 to 134354484 11303 + protein coding gene solute carrier family 30 (zinc transporter), member 2
Tssr39549 4 134343198 to 134343211 13 + TSS region transcription start site region 39549
Tssr39550 4 134343493 to 134343506 13 + TSS region transcription start site region 39550
Tssr39551 4 134343523 to 134343535 12 + TSS region transcription start site region 39551
Tssr39552 4 134343598 to 134343608 10 + TSS region transcription start site region 39552
Tssr39553 4 134343632 to 134343680 48 + TSS region transcription start site region 39553
Tssr39554 4 134343683 to 134343704 21 + TSS region transcription start site region 39554
Tssr39555 4 134343882 to 134343909 27 + TSS region transcription start site region 39555
Tssr39556 4 134344002 to 134344024 22 + TSS region transcription start site region 39556
Extl1 4 134356373 to 134372552 16179 - protein coding gene exostoses (multiple)-like 1
Cpgi15036 4 134357069 to 134357782 713 CpG island CpG island 15036
D4Mit339.2 4 134367263 to 134367439 176 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 339.2
D4Mit339 4 134367426 to 134367547 121 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 339
Cpgi15037 4 134370980 to 134371535 555 CpG island CpG island 15037
Tssr43895 4 134371614 to 134371634 20 - TSS region transcription start site region 43895
Tssr43896 4 134372529 to 134372561 32 - TSS region transcription start site region 43896
Tssr43897 4 134372575 to 134372589 14 - TSS region transcription start site region 43897
Gm5589 4 134384932 to 134386977 2045 unclassified gene predicted gene 5589
Cpgi15038 4 134395995 to 134396384 389 CpG island CpG island 15038
Pafah2 4 134396320 to 134427412 31092 + protein coding gene platelet-activating factor acetylhydrolase 2
Tssr39557 4 134396359 to 134396409 50 + TSS region transcription start site region 39557
Tssr39558 4 134397306 to 134397326 20 + TSS region transcription start site region 39558
Tssr39559 4 134397380 to 134397400 20 + TSS region transcription start site region 39559
Cpgi15039 4 134401114 to 134401507 393 CpG island CpG island 15039
Tssr39560 4 134401303 to 134401325 22 + TSS region transcription start site region 39560
Tssr39561 4 134401609 to 134401630 21 + TSS region transcription start site region 39561
Tssr39562 4 134401659 to 134401674 15 + TSS region transcription start site region 39562
Tssr43898 4 134402059 to 134402070 11 - TSS region transcription start site region 43898
Tssr39563 4 134402175 to 134402190 15 + TSS region transcription start site region 39563
Gm30453 4 134433692 to 134448283 14591 - lncRNA gene predicted gene, 30453
Cpgi15040 4 134437000 to 134437170 170 CpG island CpG island 15040
1700021N21Rik 4 134448766 to 134450171 1405 - antisense lncRNA gene RIKEN cDNA 1700021N21 gene
Cpgi15041 4 134453838 to 134454023 185 CpG island CpG island 15041
Cpgi15042 4 134467662 to 134469367 1705 CpG island CpG island 15042
Stmn1 4 134468320 to 134473843 5523 + protein coding gene stathmin 1
Tssr39564 4 134468334 to 134468406 72 + TSS region transcription start site region 39564
Gm23634 4 134468364 to 134468454 90 + miRNA gene predicted gene, 23634
Tssr1332 4 134470098 to 134470111 13 + TSS region transcription start site region 1332
Tssr39565 4 134470746 to 134470772 26 + TSS region transcription start site region 39565
Tssr1333 4 134472808 to 134472821 13 + TSS region transcription start site region 1333
Gm13250 4 134493210 to 134493716 506 + pseudogene predicted gene 13250
Tssr39566 4 134493621 to 134493623 2 + TSS region transcription start site region 39566
Cpgi15043 4 134496711 to 134497231 520 CpG island CpG island 15043
Paqr7 4 134496761 to 134510237 13476 + protein coding gene progestin and adipoQ receptor family member VII
Tssr39567 4 134496865 to 134496909 44 + TSS region transcription start site region 39567
Tssr39568 4 134496966 to 134496988 22 + TSS region transcription start site region 39568
Tssr39569 4 134496996 to 134497013 17 + TSS region transcription start site region 39569
Tssr39570 4 134502236 to 134502250 14 + TSS region transcription start site region 39570
Tssr39571 4 134506671 to 134506676 5 + TSS region transcription start site region 39571
Cpgi15044 4 134506916 to 134507139 223 CpG island CpG island 15044
Tssr1334 4 134507596 to 134507620 24 + TSS region transcription start site region 1334
Cpgi15045 4 134510857 to 134511429 572 CpG island CpG island 15045
Aunip 4 134510999 to 134523922 12923 + protein coding gene aurora kinase A and ninein interacting protein
Tssr39572 4 134511002 to 134511076 74 + TSS region transcription start site region 39572
Tssr43899 4 134517578 to 134517587 9 - TSS region transcription start site region 43899
Tssr43900 4 134517588 to 134517597 9 - TSS region transcription start site region 43900
Tssr43901 4 134517901 to 134517912 11 - TSS region transcription start site region 43901
Mtfr1l 4 134525555 to 134535387 9832 - protein coding gene mitochondrial fission regulator 1-like
Tssr43902 4 134532170 to 134532186 16 - TSS region transcription start site region 43902
Cpgi15046 4 134534187 to 134535745 1558 CpG island CpG island 15046
Tssr43903 4 134534966 to 134534973 7 - TSS region transcription start site region 43903
Tssr43904 4 134534982 to 134534993 11 - TSS region transcription start site region 43904
Tssr43905 4 134535047 to 134535107 60 - TSS region transcription start site region 43905
Tssr43906 4 134535198 to 134535267 69 - TSS region transcription start site region 43906
Tssr43907 4 134535268 to 134535314 46 - TSS region transcription start site region 43907
Tssr43908 4 134535315 to 134535330 15 - TSS region transcription start site region 43908
Tssr43909 4 134535382 to 134535391 9 - TSS region transcription start site region 43909
Tssr39573 4 134535474 to 134535515 41 + TSS region transcription start site region 39573
Selenon 4 134537892 to 134552166 14274 - protein coding gene selenoprotein N
Tssr43910 4 134538617 to 134538634 17 - TSS region transcription start site region 43910
Tssr43911 4 134540882 to 134540888 6 - TSS region transcription start site region 43911
Tssr43912 4 134548074 to 134548085 11 - TSS region transcription start site region 43912
Tssr43913 4 134548151 to 134548162 11 - TSS region transcription start site region 43913
Tssr43914 4 134548183 to 134548195 12 - TSS region transcription start site region 43914
Tssr43915 4 134548214 to 134548228 14 - TSS region transcription start site region 43915
Tssr1335 4 134548346 to 134548382 36 + TSS region transcription start site region 1335
Cpgi15047 4 134551470 to 134552644 1174 CpG island CpG island 15047
Tssr43916 4 134552122 to 134552200 78 - TSS region transcription start site region 43916
Man1c1 4 134561690 to 134704290 142600 - protein coding gene mannosidase, alpha, class 1C, member 1
Tssr43917 4 134563324 to 134563329 5 - TSS region transcription start site region 43917
Tssr43918 4 134563339 to 134563352 13 - TSS region transcription start site region 43918
Tssr43919 4 134563367 to 134563390 23 - TSS region transcription start site region 43919
Tssr43920 4 134563435 to 134563438 3 - TSS region transcription start site region 43920
Tssr43921 4 134563443 to 134563454 11 - TSS region transcription start site region 43921
Tssr43922 4 134563477 to 134563489 12 - TSS region transcription start site region 43922
Mir6403 4 134567723 to 134567851 128 - miRNA gene microRNA 6403
Tssr43923 4 134577316 to 134577338 22 - TSS region transcription start site region 43923
Gm42326 4 134591443 to 134594972 3529 + lncRNA gene predicted gene, 42326
Tssr43924 4 134661585 to 134661589 4 - TSS region transcription start site region 43924
Sluc21 4 134673830 to 134673964 134 QTL susceptibility to lung cancer 21
D4Mit70 4 134673830 to 134673964 134 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 70
Cpgi15048 4 134702806 to 134704938 2132 CpG island CpG island 15048
Tssr43925 4 134703326 to 134703411 85 - TSS region transcription start site region 43925
Tssr43926 4 134703581 to 134703649 68 - TSS region transcription start site region 43926
Tssr43927 4 134703741 to 134703778 37 - TSS region transcription start site region 43927
Tssr43928 4 134703785 to 134703813 28 - TSS region transcription start site region 43928
Tssr43929 4 134704098 to 134704110 12 - TSS region transcription start site region 43929
Tssr43930 4 134704235 to 134704295 60 - TSS region transcription start site region 43930
Ldlrap1 4 134741554 to 134768004 26450 - protein coding gene low density lipoprotein receptor adaptor protein 1
Tssr43931 4 134750248 to 134750261 13 - TSS region transcription start site region 43931
Tssr43932 4 134750290 to 134750298 8 - TSS region transcription start site region 43932
Tssr43933 4 134757639 to 134757648 9 - TSS region transcription start site region 43933
Tssr43934 4 134762491 to 134762505 14 - TSS region transcription start site region 43934
Cpgi15049 4 134767159 to 134768349 1190 CpG island CpG island 15049
Tssr43935 4 134767924 to 134767937 13 - TSS region transcription start site region 43935
Tssr43936 4 134767940 to 134768010 70 - TSS region transcription start site region 43936
Maco1 4 134802759 to 134853345 50586 - protein coding gene macoilin 1
Cpgi15050 4 134852236 to 134854478 2242 CpG island CpG island 15050
Tssr43937 4 134853228 to 134853272 44 - TSS region transcription start site region 43937
Tssr43938 4 134853294 to 134853324 30 - TSS region transcription start site region 43938
Tssr39574 4 134853578 to 134853614 36 + TSS region transcription start site region 39574
Tssr43939 4 134853853 to 134853879 26 - TSS region transcription start site region 43939
Rhd 4 134864536 to 134896172 31636 + protein coding gene Rh blood group, D antigen
Tssr39575 4 134864556 to 134864601 45 + TSS region transcription start site region 39575
Cpgi15051 4 134869644 to 134869823 179 CpG island CpG island 15051
Tssr39576 4 134873642 to 134873647 5 + TSS region transcription start site region 39576
Tssr43940 4 134896309 to 134896319 10 - TSS region transcription start site region 43940
Tssr43941 4 134896329 to 134896340 11 - TSS region transcription start site region 43941
Tssr43942 4 134897236 to 134897245 9 - TSS region transcription start site region 43942
Tssr39577 4 134897848 to 134897854 6 + TSS region transcription start site region 39577
Tmem50a 4 134897849 to 134915024 17175 - protein coding gene transmembrane protein 50A
Cpgi15052 4 134914559 to 134915212 653 CpG island CpG island 15052
Tssr43943 4 134914940 to 134914973 33 - TSS region transcription start site region 43943
Tssr43944 4 134914975 to 134915009 34 - TSS region transcription start site region 43944
Tssr43945 4 134915010 to 134915019 9 - TSS region transcription start site region 43945
Tssr39578 4 134915089 to 134915119 30 + TSS region transcription start site region 39578
Tssr43946 4 134918366 to 134918415 49 - TSS region transcription start site region 43946
Tssr39579 4 134922639 to 134922644 5 + TSS region transcription start site region 39579
Tssr39580 4 134923050 to 134923081 31 + TSS region transcription start site region 39580
Cpgi15053 4 134923274 to 134924664 1390 CpG island CpG island 15053
Tssr39581 4 134923589 to 134923593 4 + TSS region transcription start site region 39581
Tssr39582 4 134923616 to 134923628 12 + TSS region transcription start site region 39582
Rsrp1 4 134923625 to 134927370 3745 + protein coding gene arginine/serine rich protein 1
Tssr39583 4 134923979 to 134923999 20 + TSS region transcription start site region 39583
Tssr39584 4 134924024 to 134924065 41 + TSS region transcription start site region 39584
Tssr39585 4 134924072 to 134924099 27 + TSS region transcription start site region 39585
Tssr39586 4 134924204 to 134924221 17 + TSS region transcription start site region 39586
Tssr39587 4 134924258 to 134924289 31 + TSS region transcription start site region 39587
Tssr39588 4 134924358 to 134924375 17 + TSS region transcription start site region 39588
Tssr39589 4 134924382 to 134924400 18 + TSS region transcription start site region 39589
Tssr39590 4 134924416 to 134924427 11 + TSS region transcription start site region 39590
Tssr39591 4 134925457 to 134925467 10 + TSS region transcription start site region 39591
Tssr39592 4 134926068 to 134926073 5 + TSS region transcription start site region 39592
Tssr39593 4 134926590 to 134926603 13 + TSS region transcription start site region 39593
Tssr39594 4 134926675 to 134926690 15 + TSS region transcription start site region 39594
Tssr39595 4 134926702 to 134926730 28 + TSS region transcription start site region 39595
Tssr43947 4 134927368 to 134927371 3 - TSS region transcription start site region 43947
Cpgi15054 4 134930673 to 134931527 854 CpG island CpG island 15054
Tssr39596 4 134930899 to 134930910 11 + TSS region transcription start site region 39596
Tssr39597 4 134930918 to 134930929 11 + TSS region transcription start site region 39597
Tssr39598 4 134930946 to 134930997 51 + TSS region transcription start site region 39598
Syf2 4 134930980 to 134937537 6557 + protein coding gene SYF2 homolog, RNA splicing factor (S. cerevisiae)
Tssr39599 4 134931217 to 134931229 12 + TSS region transcription start site region 39599
Cpgi15055 4 134943986 to 134944187 201 CpG island CpG island 15055
Cpgi15056 4 134963177 to 134963406 229 CpG island CpG island 15056
Cpgi15057 4 134968648 to 134968803 155 CpG island CpG island 15057
Cpgi15058 4 135025727 to 135026042 315 CpG island CpG island 15058
Gm42327 4 135043698 to 135051367 7669 - lncRNA gene predicted gene, 42327
Cpgi15059 4 135053676 to 135053912 236 CpG island CpG island 15059
Tssr1336 4 135069599 to 135069613 14 - TSS region transcription start site region 1336
Tssr43948 4 135073570 to 135073574 4 - TSS region transcription start site region 43948
Gm16225 4 135118221 to 135120447 2226 - lincRNA gene predicted gene 16225
Tssr43949 4 135120466 to 135120504 38 - TSS region transcription start site region 43949
Tssr39600 4 135120640 to 135120660 20 + TSS region transcription start site region 39600
Runx3 4 135120652 to 135177990 57338 + protein coding gene runt related transcription factor 3
Tssr39601 4 135120923 to 135120934 11 + TSS region transcription start site region 39601