Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:134203598-134483608

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78 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Catsper4 4 134211970 to 134227383 15413 - protein coding gene cation channel, sperm associated 4
Tssr43884 4 134227359 to 134227388 29 - TSS region transcription start site region 43884
Tssr43885 4 134227390 to 134227406 16 - TSS region transcription start site region 43885
Cnksr1 4 134228041 to 134238399 10358 - protein coding gene connector enhancer of kinase suppressor of Ras 1
Cpgi15030 4 134238100 to 134238564 464 CpG island CpG island 15030
Tssr43886 4 134238326 to 134238369 43 - TSS region transcription start site region 43886
Tssr43887 4 134238372 to 134238398 26 - TSS region transcription start site region 43887
Zfp593 4 134243306 to 134245591 2285 - protein coding gene zinc finger protein 593
Tssr39539 4 134243754 to 134243768 14 + TSS region transcription start site region 39539
E130218I03Rik 4 134243763 to 134245873 2110 + lncRNA gene RIKEN cDNA E130218I03 gene
Tssr39540 4 134244109 to 134244146 37 + TSS region transcription start site region 39540
Tssr39541 4 134244192 to 134244204 12 + TSS region transcription start site region 39541
Cpgi15031 4 134244961 to 134245841 880 CpG island CpG island 15031
Tssr43888 4 134245461 to 134245470 9 - TSS region transcription start site region 43888
Tssr43889 4 134245503 to 134245510 7 - TSS region transcription start site region 43889
Tssr43890 4 134245517 to 134245533 16 - TSS region transcription start site region 43890
Tssr43891 4 134245538 to 134245577 39 - TSS region transcription start site region 43891
Tssr43892 4 134245579 to 134245604 25 - TSS region transcription start site region 43892
Tssr39542 4 134246933 to 134246934 1 + TSS region transcription start site region 39542
Gm30191 4 134246935 to 134250042 3107 + protein coding gene predicted gene, 30191
Tssr39543 4 134246942 to 134246969 27 + TSS region transcription start site region 39543
Cpgi15032 4 134249524 to 134250128 604 CpG island CpG island 15032
Cpgi15033 4 134250687 to 134252404 1717 CpG island CpG island 15033
Grrp1 4 134251110 to 134254106 2996 - protein coding gene glycine/arginine rich protein 1
Tssr43893 4 134254076 to 134254128 52 - TSS region transcription start site region 43893
Gm42325 4 134255786 to 134265655 9869 + lncRNA gene predicted gene, 42325
Tssr39544 4 134268334 to 134268345 11 + TSS region transcription start site region 39544
Pdik1l 4 134275002 to 134287846 12844 - protein coding gene PDLIM1 interacting kinase 1 like
Cpgi15034 4 134286444 to 134288095 1651 CpG island CpG island 15034
Tssr43894 4 134287215 to 134287258 43 - TSS region transcription start site region 43894
D4Jcs21 4 134312212 to 134312548 336 DNA segment DNA segment, Chr 4, John C. Schimenti 21
Tssr39545 4 134315094 to 134315103 9 + TSS region transcription start site region 39545
Tssr39546 4 134315112 to 134315126 14 + TSS region transcription start site region 39546
Trim63 4 134315120 to 134329629 14509 + protein coding gene tripartite motif-containing 63
Tssr39547 4 134324897 to 134324910 13 + TSS region transcription start site region 39547
Gm13195 4 134335498 to 134335758 260 - pseudogene predicted gene 13195
Cpgi15035 4 134342922 to 134343788 866 CpG island CpG island 15035
Tssr39548 4 134343143 to 134343154 11 + TSS region transcription start site region 39548
Slc30a2 4 134343181 to 134354484 11303 + protein coding gene solute carrier family 30 (zinc transporter), member 2
Tssr39549 4 134343198 to 134343211 13 + TSS region transcription start site region 39549
Tssr39550 4 134343493 to 134343506 13 + TSS region transcription start site region 39550
Tssr39551 4 134343523 to 134343535 12 + TSS region transcription start site region 39551
Tssr39552 4 134343598 to 134343608 10 + TSS region transcription start site region 39552
Tssr39553 4 134343632 to 134343680 48 + TSS region transcription start site region 39553
Tssr39554 4 134343683 to 134343704 21 + TSS region transcription start site region 39554
Tssr39555 4 134343882 to 134343909 27 + TSS region transcription start site region 39555
Tssr39556 4 134344002 to 134344024 22 + TSS region transcription start site region 39556
Extl1 4 134356373 to 134372552 16179 - protein coding gene exostoses (multiple)-like 1
Cpgi15036 4 134357069 to 134357782 713 CpG island CpG island 15036
D4Mit339.2 4 134367263 to 134367439 176 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 339.2
D4Mit339 4 134367426 to 134367547 121 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 339
Cpgi15037 4 134370980 to 134371535 555 CpG island CpG island 15037
Tssr43895 4 134371614 to 134371634 20 - TSS region transcription start site region 43895
Tssr43896 4 134372529 to 134372561 32 - TSS region transcription start site region 43896
Tssr43897 4 134372575 to 134372589 14 - TSS region transcription start site region 43897
Gm5589 4 134384932 to 134386977 2045 unclassified gene predicted gene 5589
Cpgi15038 4 134395995 to 134396384 389 CpG island CpG island 15038
Pafah2 4 134396320 to 134427412 31092 + protein coding gene platelet-activating factor acetylhydrolase 2
Tssr39557 4 134396359 to 134396409 50 + TSS region transcription start site region 39557
Tssr39558 4 134397306 to 134397326 20 + TSS region transcription start site region 39558
Tssr39559 4 134397380 to 134397400 20 + TSS region transcription start site region 39559
Cpgi15039 4 134401114 to 134401507 393 CpG island CpG island 15039
Tssr39560 4 134401303 to 134401325 22 + TSS region transcription start site region 39560
Tssr39561 4 134401609 to 134401630 21 + TSS region transcription start site region 39561
Tssr39562 4 134401659 to 134401674 15 + TSS region transcription start site region 39562
Tssr43898 4 134402059 to 134402070 11 - TSS region transcription start site region 43898
Tssr39563 4 134402175 to 134402190 15 + TSS region transcription start site region 39563
Gm30453 4 134433692 to 134448283 14591 - lncRNA gene predicted gene, 30453
Cpgi15040 4 134437000 to 134437170 170 CpG island CpG island 15040
1700021N21Rik 4 134448766 to 134450171 1405 - antisense lncRNA gene RIKEN cDNA 1700021N21 gene
Cpgi15041 4 134453838 to 134454023 185 CpG island CpG island 15041
Cpgi15042 4 134467662 to 134469367 1705 CpG island CpG island 15042
Stmn1 4 134468320 to 134473843 5523 + protein coding gene stathmin 1
Tssr39564 4 134468334 to 134468406 72 + TSS region transcription start site region 39564
Gm23634 4 134468364 to 134468454 90 + miRNA gene predicted gene, 23634
Tssr1332 4 134470098 to 134470111 13 + TSS region transcription start site region 1332
Tssr39565 4 134470746 to 134470772 26 + TSS region transcription start site region 39565
Tssr1333 4 134472808 to 134472821 13 + TSS region transcription start site region 1333