Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:134118598-134568608

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159 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ubxn11 4 134102520 to 134126784 24264 + protein coding gene UBX domain protein 11
Tssr39531 4 134118589 to 134118605 16 + TSS region transcription start site region 39531
Tssr39532 4 134121819 to 134121835 16 + TSS region transcription start site region 39532
Tssr39533 4 134121842 to 134121860 18 + TSS region transcription start site region 39533
Tssr39534 4 134124510 to 134124558 48 + TSS region transcription start site region 39534
Sh3bgrl3 4 134127406 to 134128753 1347 - protein coding gene SH3 domain binding glutamic acid-rich protein-like 3
Tssr39535 4 134127535 to 134127605 70 + TSS region transcription start site region 39535
Tssr39536 4 134127618 to 134127715 97 + TSS region transcription start site region 39536
Tssr43866 4 134127627 to 134127686 59 - TSS region transcription start site region 43866
Tssr43867 4 134127687 to 134127720 33 - TSS region transcription start site region 43867
Tssr43868 4 134127723 to 134127791 68 - TSS region transcription start site region 43868
Tssr43869 4 134127798 to 134127811 13 - TSS region transcription start site region 43869
Tssr39537 4 134127908 to 134127966 58 + TSS region transcription start site region 39537
Tssr43870 4 134127951 to 134127973 22 - TSS region transcription start site region 43870
Tssr43871 4 134127999 to 134128023 24 - TSS region transcription start site region 43871
Tssr43872 4 134128029 to 134128050 21 - TSS region transcription start site region 43872
Tssr43873 4 134128052 to 134128076 24 - TSS region transcription start site region 43873
Tssr43874 4 134128082 to 134128091 9 - TSS region transcription start site region 43874
Cpgi15028 4 134128252 to 134129120 868 CpG island CpG island 15028
Tssr43875 4 134128680 to 134128700 20 - TSS region transcription start site region 43875
Tssr43876 4 134128707 to 134128770 63 - TSS region transcription start site region 43876
Tssr43877 4 134129604 to 134129611 7 - TSS region transcription start site region 43877
Cep85 4 134129858 to 134187085 57227 - protein coding gene centrosomal protein 85
Tssr43878 4 134154387 to 134154415 28 - TSS region transcription start site region 43878
Tssr43879 4 134154459 to 134154482 23 - TSS region transcription start site region 43879
Tssr43880 4 134156903 to 134156917 14 - TSS region transcription start site region 43880
Tssr43881 4 134156922 to 134156932 10 - TSS region transcription start site region 43881
Gm46894 4 134159957 to 134164109 4152 + protein coding gene predicted gene, 46894
Tssr39538 4 134160350 to 134160376 26 + TSS region transcription start site region 39538
Gm27619 4 134167808 to 134167895 87 - snoRNA gene predicted gene, 27619
Cpgi15029 4 134186301 to 134187496 1195 CpG island CpG island 15029
Tssr43882 4 134186992 to 134187006 14 - TSS region transcription start site region 43882
Tssr43883 4 134187019 to 134187090 71 - TSS region transcription start site region 43883
Gm7534 4 134190804 to 134203004 12200 - protein coding gene predicted gene 7534
Gm13131 4 134199830 to 134200150 320 - pseudogene predicted gene 13131
Catsper4 4 134211970 to 134227383 15413 - protein coding gene cation channel, sperm associated 4
Tssr43884 4 134227359 to 134227388 29 - TSS region transcription start site region 43884
Tssr43885 4 134227390 to 134227406 16 - TSS region transcription start site region 43885
Cnksr1 4 134228041 to 134238399 10358 - protein coding gene connector enhancer of kinase suppressor of Ras 1
Cpgi15030 4 134238100 to 134238564 464 CpG island CpG island 15030
Tssr43886 4 134238326 to 134238369 43 - TSS region transcription start site region 43886
Tssr43887 4 134238372 to 134238398 26 - TSS region transcription start site region 43887
Zfp593 4 134243306 to 134245591 2285 - protein coding gene zinc finger protein 593
Tssr39539 4 134243754 to 134243768 14 + TSS region transcription start site region 39539
E130218I03Rik 4 134243763 to 134245873 2110 + lncRNA gene RIKEN cDNA E130218I03 gene
Tssr39540 4 134244109 to 134244146 37 + TSS region transcription start site region 39540
Tssr39541 4 134244192 to 134244204 12 + TSS region transcription start site region 39541
Cpgi15031 4 134244961 to 134245841 880 CpG island CpG island 15031
Tssr43888 4 134245461 to 134245470 9 - TSS region transcription start site region 43888
Tssr43889 4 134245503 to 134245510 7 - TSS region transcription start site region 43889
Tssr43890 4 134245517 to 134245533 16 - TSS region transcription start site region 43890
Tssr43891 4 134245538 to 134245577 39 - TSS region transcription start site region 43891
Tssr43892 4 134245579 to 134245604 25 - TSS region transcription start site region 43892
Tssr39542 4 134246933 to 134246934 1 + TSS region transcription start site region 39542
Gm30191 4 134246935 to 134250042 3107 + protein coding gene predicted gene, 30191
Tssr39543 4 134246942 to 134246969 27 + TSS region transcription start site region 39543
Cpgi15032 4 134249524 to 134250128 604 CpG island CpG island 15032
Cpgi15033 4 134250687 to 134252404 1717 CpG island CpG island 15033
Grrp1 4 134251110 to 134254106 2996 - protein coding gene glycine/arginine rich protein 1
Tssr43893 4 134254076 to 134254128 52 - TSS region transcription start site region 43893
Gm42325 4 134255786 to 134265655 9869 + lncRNA gene predicted gene, 42325
Tssr39544 4 134268334 to 134268345 11 + TSS region transcription start site region 39544
Pdik1l 4 134275002 to 134287846 12844 - protein coding gene PDLIM1 interacting kinase 1 like
Cpgi15034 4 134286444 to 134288095 1651 CpG island CpG island 15034
Tssr43894 4 134287215 to 134287258 43 - TSS region transcription start site region 43894
D4Jcs21 4 134312212 to 134312548 336 DNA segment DNA segment, Chr 4, John C. Schimenti 21
Tssr39545 4 134315094 to 134315103 9 + TSS region transcription start site region 39545
Tssr39546 4 134315112 to 134315126 14 + TSS region transcription start site region 39546
Trim63 4 134315120 to 134329629 14509 + protein coding gene tripartite motif-containing 63
Tssr39547 4 134324897 to 134324910 13 + TSS region transcription start site region 39547
Gm13195 4 134335498 to 134335758 260 - pseudogene predicted gene 13195
Cpgi15035 4 134342922 to 134343788 866 CpG island CpG island 15035
Tssr39548 4 134343143 to 134343154 11 + TSS region transcription start site region 39548
Slc30a2 4 134343181 to 134354484 11303 + protein coding gene solute carrier family 30 (zinc transporter), member 2
Tssr39549 4 134343198 to 134343211 13 + TSS region transcription start site region 39549
Tssr39550 4 134343493 to 134343506 13 + TSS region transcription start site region 39550
Tssr39551 4 134343523 to 134343535 12 + TSS region transcription start site region 39551
Tssr39552 4 134343598 to 134343608 10 + TSS region transcription start site region 39552
Tssr39553 4 134343632 to 134343680 48 + TSS region transcription start site region 39553
Tssr39554 4 134343683 to 134343704 21 + TSS region transcription start site region 39554
Tssr39555 4 134343882 to 134343909 27 + TSS region transcription start site region 39555
Tssr39556 4 134344002 to 134344024 22 + TSS region transcription start site region 39556
Extl1 4 134356373 to 134372552 16179 - protein coding gene exostoses (multiple)-like 1
Cpgi15036 4 134357069 to 134357782 713 CpG island CpG island 15036
D4Mit339.2 4 134367263 to 134367439 176 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 339.2
D4Mit339 4 134367426 to 134367547 121 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 339
Cpgi15037 4 134370980 to 134371535 555 CpG island CpG island 15037
Tssr43895 4 134371614 to 134371634 20 - TSS region transcription start site region 43895
Tssr43896 4 134372529 to 134372561 32 - TSS region transcription start site region 43896
Tssr43897 4 134372575 to 134372589 14 - TSS region transcription start site region 43897
Gm5589 4 134384932 to 134386977 2045 unclassified gene predicted gene 5589
Cpgi15038 4 134395995 to 134396384 389 CpG island CpG island 15038
Pafah2 4 134396320 to 134427412 31092 + protein coding gene platelet-activating factor acetylhydrolase 2
Tssr39557 4 134396359 to 134396409 50 + TSS region transcription start site region 39557
Tssr39558 4 134397306 to 134397326 20 + TSS region transcription start site region 39558
Tssr39559 4 134397380 to 134397400 20 + TSS region transcription start site region 39559
Cpgi15039 4 134401114 to 134401507 393 CpG island CpG island 15039
Tssr39560 4 134401303 to 134401325 22 + TSS region transcription start site region 39560
Tssr39561 4 134401609 to 134401630 21 + TSS region transcription start site region 39561
Tssr39562 4 134401659 to 134401674 15 + TSS region transcription start site region 39562
Tssr43898 4 134402059 to 134402070 11 - TSS region transcription start site region 43898
Tssr39563 4 134402175 to 134402190 15 + TSS region transcription start site region 39563
Gm30453 4 134433692 to 134448283 14591 - lncRNA gene predicted gene, 30453
Cpgi15040 4 134437000 to 134437170 170 CpG island CpG island 15040
1700021N21Rik 4 134448766 to 134450171 1405 - antisense lncRNA gene RIKEN cDNA 1700021N21 gene
Cpgi15041 4 134453838 to 134454023 185 CpG island CpG island 15041
Cpgi15042 4 134467662 to 134469367 1705 CpG island CpG island 15042
Stmn1 4 134468320 to 134473843 5523 + protein coding gene stathmin 1
Tssr39564 4 134468334 to 134468406 72 + TSS region transcription start site region 39564
Gm23634 4 134468364 to 134468454 90 + miRNA gene predicted gene, 23634
Tssr1332 4 134470098 to 134470111 13 + TSS region transcription start site region 1332
Tssr39565 4 134470746 to 134470772 26 + TSS region transcription start site region 39565
Tssr1333 4 134472808 to 134472821 13 + TSS region transcription start site region 1333
Gm13250 4 134493210 to 134493716 506 + pseudogene predicted gene 13250
Tssr39566 4 134493621 to 134493623 2 + TSS region transcription start site region 39566
Cpgi15043 4 134496711 to 134497231 520 CpG island CpG island 15043
Paqr7 4 134496761 to 134510237 13476 + protein coding gene progestin and adipoQ receptor family member VII
Tssr39567 4 134496865 to 134496909 44 + TSS region transcription start site region 39567
Tssr39568 4 134496966 to 134496988 22 + TSS region transcription start site region 39568
Tssr39569 4 134496996 to 134497013 17 + TSS region transcription start site region 39569
Tssr39570 4 134502236 to 134502250 14 + TSS region transcription start site region 39570
Tssr39571 4 134506671 to 134506676 5 + TSS region transcription start site region 39571
Cpgi15044 4 134506916 to 134507139 223 CpG island CpG island 15044
Tssr1334 4 134507596 to 134507620 24 + TSS region transcription start site region 1334
Cpgi15045 4 134510857 to 134511429 572 CpG island CpG island 15045
Aunip 4 134510999 to 134523922 12923 + protein coding gene aurora kinase A and ninein interacting protein
Tssr39572 4 134511002 to 134511076 74 + TSS region transcription start site region 39572
Tssr43899 4 134517578 to 134517587 9 - TSS region transcription start site region 43899
Tssr43900 4 134517588 to 134517597 9 - TSS region transcription start site region 43900
Tssr43901 4 134517901 to 134517912 11 - TSS region transcription start site region 43901
Mtfr1l 4 134525555 to 134535387 9832 - protein coding gene mitochondrial fission regulator 1-like
Tssr43902 4 134532170 to 134532186 16 - TSS region transcription start site region 43902
Cpgi15046 4 134534187 to 134535745 1558 CpG island CpG island 15046
Tssr43903 4 134534966 to 134534973 7 - TSS region transcription start site region 43903
Tssr43904 4 134534982 to 134534993 11 - TSS region transcription start site region 43904
Tssr43905 4 134535047 to 134535107 60 - TSS region transcription start site region 43905
Tssr43906 4 134535198 to 134535267 69 - TSS region transcription start site region 43906
Tssr43907 4 134535268 to 134535314 46 - TSS region transcription start site region 43907
Tssr43908 4 134535315 to 134535330 15 - TSS region transcription start site region 43908
Tssr43909 4 134535382 to 134535391 9 - TSS region transcription start site region 43909
Tssr39573 4 134535474 to 134535515 41 + TSS region transcription start site region 39573
Selenon 4 134537892 to 134552166 14274 - protein coding gene selenoprotein N
Tssr43910 4 134538617 to 134538634 17 - TSS region transcription start site region 43910
Tssr43911 4 134540882 to 134540888 6 - TSS region transcription start site region 43911
Tssr43912 4 134548074 to 134548085 11 - TSS region transcription start site region 43912
Tssr43913 4 134548151 to 134548162 11 - TSS region transcription start site region 43913
Tssr43914 4 134548183 to 134548195 12 - TSS region transcription start site region 43914
Tssr43915 4 134548214 to 134548228 14 - TSS region transcription start site region 43915
Tssr1335 4 134548346 to 134548382 36 + TSS region transcription start site region 1335
Cpgi15047 4 134551470 to 134552644 1174 CpG island CpG island 15047
Tssr43916 4 134552122 to 134552200 78 - TSS region transcription start site region 43916
Man1c1 4 134561690 to 134704290 142600 - protein coding gene mannosidase, alpha, class 1C, member 1
Tssr43917 4 134563324 to 134563329 5 - TSS region transcription start site region 43917
Tssr43918 4 134563339 to 134563352 13 - TSS region transcription start site region 43918
Tssr43919 4 134563367 to 134563390 23 - TSS region transcription start site region 43919
Tssr43920 4 134563435 to 134563438 3 - TSS region transcription start site region 43920
Tssr43921 4 134563443 to 134563454 11 - TSS region transcription start site region 43921
Tssr43922 4 134563477 to 134563489 12 - TSS region transcription start site region 43922
Mir6403 4 134567723 to 134567851 128 - miRNA gene microRNA 6403