Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:133751819-134491835

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242 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cfq9 4 130142494 to 134045411 3902917 QTL conditioned fear QTL 9
Arid1a 4 133679008 to 133753977 74969 - protein coding gene AT rich interactive domain 1A (SWI-like)
Tssr39502 4 133751837 to 133751848 11 + TSS region transcription start site region 39502
Cpgi15015 4 133752049 to 133755024 2975 CpG island CpG island 15015
Tssr43804 4 133752704 to 133752756 52 - TSS region transcription start site region 43804
Tssr43805 4 133753030 to 133753044 14 - TSS region transcription start site region 43805
Tssr43806 4 133753616 to 133753666 50 - TSS region transcription start site region 43806
Tssr43807 4 133753860 to 133753869 9 - TSS region transcription start site region 43807
Tssr43808 4 133753915 to 133753926 11 - TSS region transcription start site region 43808
Tssr43809 4 133753961 to 133754019 58 - TSS region transcription start site region 43809
Tssr43810 4 133754222 to 133754237 15 - TSS region transcription start site region 43810
Tssr43811 4 133754260 to 133754297 37 - TSS region transcription start site region 43811
Tssr43812 4 133754299 to 133754316 17 - TSS region transcription start site region 43812
Tssr43813 4 133754322 to 133754378 56 - TSS region transcription start site region 43813
Tssr43814 4 133754397 to 133754408 11 - TSS region transcription start site region 43814
Cpgi15016 4 133756499 to 133757883 1384 CpG island CpG island 15016
Tssr43815 4 133756520 to 133756539 19 - TSS region transcription start site region 43815
Tssr43816 4 133756780 to 133756794 14 - TSS region transcription start site region 43816
Tssr43817 4 133757400 to 133757435 35 - TSS region transcription start site region 43817
Gm30019 4 133768128 to 133775447 7319 - lncRNA gene predicted gene, 30019
Gm29942 4 133774969 to 133781279 6310 + lncRNA gene predicted gene, 29942
D4Mit71 4 133785915 to 133786031 116 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 71
D4Dcr28 4 133785938 to 133786036 98 DNA segment DNA Segment, Chr 4, Derry C. Roopenian 28
Gm34296 4 133792037 to 133821546 29509 - lncRNA gene predicted gene, 34296
Gm25270 4 133797582 to 133797719 137 - snRNA gene predicted gene, 25270
Cpgi15017 4 133813135 to 133814792 1657 CpG island CpG island 15017
Tssr43818 4 133813294 to 133813305 11 - TSS region transcription start site region 43818
Tssr39503 4 133813402 to 133813405 3 + TSS region transcription start site region 39503
Tssr39504 4 133813534 to 133813561 27 + TSS region transcription start site region 39504
Tssr43819 4 133814106 to 133814134 28 - TSS region transcription start site region 43819
Tssr43820 4 133815805 to 133815816 11 - TSS region transcription start site region 43820
Tssr39505 4 133816248 to 133816254 6 + TSS region transcription start site region 39505
Tssr39506 4 133816281 to 133816293 12 + TSS region transcription start site region 39506
Gm12974 4 133816420 to 133817614 1194 + lincRNA gene predicted gene 12974
Tssr39507 4 133816474 to 133816490 16 + TSS region transcription start site region 39507
Rps6ka1 4 133847290 to 133887797 40507 - protein coding gene ribosomal protein S6 kinase polypeptide 1
Tssr43821 4 133865316 to 133865337 21 - TSS region transcription start site region 43821
Gm12977 4 133871830 to 133876533 4703 + antisense lncRNA gene predicted gene 12977
Tssr43822 4 133872304 to 133872346 42 - TSS region transcription start site region 43822
Tssr43823 4 133872997 to 133873044 47 - TSS region transcription start site region 43823
Tssr43824 4 133873048 to 133873061 13 - TSS region transcription start site region 43824
Tssr43825 4 133874658 to 133874669 11 - TSS region transcription start site region 43825
Tssr43826 4 133874682 to 133874722 40 - TSS region transcription start site region 43826
Tssr43827 4 133875228 to 133875239 11 - TSS region transcription start site region 43827
Tssr43828 4 133875260 to 133875274 14 - TSS region transcription start site region 43828
Gm12985 4 133882945 to 133883127 182 - pseudogene predicted gene 12985
Gm22523 4 133883399 to 133883498 99 - snRNA gene predicted gene, 22523
Cpgi15018 4 133887040 to 133888452 1412 CpG island CpG island 15018
Tssr43829 4 133887744 to 133887762 18 - TSS region transcription start site region 43829
Tssr43830 4 133887765 to 133887804 39 - TSS region transcription start site region 43830
Tssr43831 4 133887823 to 133887824 1 - TSS region transcription start site region 43831
Tssr43832 4 133899469 to 133899493 24 - TSS region transcription start site region 43832
Cpgi15019 4 133910454 to 133911296 842 CpG island CpG island 15019
4930429E23Rik 4 133910553 to 133911443 890 unclassified gene RIKEN cDNA 4930429E23 gene
Tssr43833 4 133910663 to 133910674 11 - TSS region transcription start site region 43833
Tssr43834 4 133910690 to 133910712 22 - TSS region transcription start site region 43834
Tssr43835 4 133910730 to 133910735 5 - TSS region transcription start site region 43835
Tssr39508 4 133944019 to 133944027 8 + TSS region transcription start site region 39508
Hmgn2 4 133964739 to 133967991 3252 - protein coding gene high mobility group nucleosomal binding domain 2
Cpgi15020 4 133966892 to 133968970 2078 CpG island CpG island 15020
Tssr43836 4 133967194 to 133967227 33 - TSS region transcription start site region 43836
Tssr43837 4 133967235 to 133967284 49 - TSS region transcription start site region 43837
Tssr43838 4 133967296 to 133967308 12 - TSS region transcription start site region 43838
Tssr43839 4 133967924 to 133967951 27 - TSS region transcription start site region 43839
Tssr43840 4 133967953 to 133968005 52 - TSS region transcription start site region 43840
Tssr43841 4 133968114 to 133968126 12 - TSS region transcription start site region 43841
Tssr39509 4 133968149 to 133968153 4 + TSS region transcription start site region 39509
Tssr43842 4 133968611 to 133968621 10 - TSS region transcription start site region 43842
Dhdds 4 133969057 to 134000864 31807 - protein coding gene dehydrodolichyl diphosphate synthase
Tssr1329 4 133973774 to 133973778 4 + TSS region transcription start site region 1329
Tssr43843 4 133980564 to 133980578 14 - TSS region transcription start site region 43843
Tssr43844 4 133984830 to 133984833 3 - TSS region transcription start site region 43844
Cpgi15021 4 134000565 to 134001393 828 CpG island CpG island 15021
Tssr43845 4 134000830 to 134000850 20 - TSS region transcription start site region 43845
Tssr43846 4 134000857 to 134000904 47 - TSS region transcription start site region 43846
Lin28a 4 134003330 to 134018841 15511 - protein coding gene lin-28 homolog A (C. elegans)
Gm10299 4 134003362 to 134004884 1522 unclassified gene predicted gene 10299
Tssr43847 4 134004120 to 134004138 18 - TSS region transcription start site region 43847
Tssr43848 4 134004185 to 134004201 16 - TSS region transcription start site region 43848
Tssr43849 4 134004450 to 134004484 34 - TSS region transcription start site region 43849
Tssr43850 4 134004530 to 134004539 9 - TSS region transcription start site region 43850
Tssr43851 4 134004585 to 134004597 12 - TSS region transcription start site region 43851
Tssr43852 4 134012381 to 134012404 23 - TSS region transcription start site region 43852
Tssr43853 4 134012407 to 134012430 23 - TSS region transcription start site region 43853
Tssr1330 4 134012432 to 134012435 3 - TSS region transcription start site region 1330
Cpgi15022 4 134017692 to 134018891 1199 CpG island CpG island 15022
Gm13061 4 134018147 to 134019869 1722 + unclassified non-coding RNA gene predicted gene 13061
Tssr43854 4 134018747 to 134018754 7 - TSS region transcription start site region 43854
Tssr43855 4 134018785 to 134018792 7 - TSS region transcription start site region 43855
Tssr43856 4 134018798 to 134018823 25 - TSS region transcription start site region 43856
Tssr43857 4 134018829 to 134018836 7 - TSS region transcription start site region 43857
Tssr43858 4 134018849 to 134018862 13 - TSS region transcription start site region 43858
Tssr39510 4 134019439 to 134019450 11 + TSS region transcription start site region 39510
Cpgi15023 4 134036037 to 134036298 261 CpG island CpG island 15023
Tssr39511 4 134052685 to 134052696 11 + TSS region transcription start site region 39511
Tssr39512 4 134052716 to 134052731 15 + TSS region transcription start site region 39512
Zfp683 4 134053838 to 134058996 5158 + protein coding gene zinc finger protein 683
Cpgi15024 4 134058562 to 134058721 159 CpG island CpG island 15024
Tssr39513 4 134060739 to 134060748 9 + TSS region transcription start site region 39513
Tssr1331 4 134060754 to 134060774 20 + TSS region transcription start site region 1331
Crybg2 4 134060815 to 134092504 31689 + protein coding gene crystallin beta-gamma domain containing 2
Tssr39514 4 134065622 to 134065674 52 + TSS region transcription start site region 39514
Tssr39515 4 134065677 to 134065691 14 + TSS region transcription start site region 39515
Tssr39516 4 134065696 to 134065704 8 + TSS region transcription start site region 39516
Tssr39517 4 134065866 to 134065893 27 + TSS region transcription start site region 39517
Tssr39518 4 134065897 to 134065926 29 + TSS region transcription start site region 39518
Tssr39519 4 134068429 to 134068442 13 + TSS region transcription start site region 39519
Cpgi15025 4 134072795 to 134073277 482 CpG island CpG island 15025
Cpgi15026 4 134081660 to 134082546 886 CpG island CpG island 15026
Tssr39520 4 134093536 to 134093542 6 + TSS region transcription start site region 39520
Cd52 4 134093538 to 134095073 1535 - protein coding gene CD52 antigen
Tssr43859 4 134093575 to 134093585 10 - TSS region transcription start site region 43859
Tssr39521 4 134093607 to 134093629 22 + TSS region transcription start site region 39521
Tssr43860 4 134093800 to 134093811 11 - TSS region transcription start site region 43860
Tssr43861 4 134093865 to 134093885 20 - TSS region transcription start site region 43861
Tssr43862 4 134095032 to 134095059 27 - TSS region transcription start site region 43862
Tssr43863 4 134095078 to 134095090 12 - TSS region transcription start site region 43863
Tssr39522 4 134095154 to 134095198 44 + TSS region transcription start site region 39522
Tssr39523 4 134097530 to 134097549 19 + TSS region transcription start site region 39523
Tssr43864 4 134098667 to 134098676 9 - TSS region transcription start site region 43864
Tssr39524 4 134098800 to 134098804 4 + TSS region transcription start site region 39524
Tssr39525 4 134098855 to 134098867 12 + TSS region transcription start site region 39525
Tssr39526 4 134098899 to 134098912 13 + TSS region transcription start site region 39526
Cpgi15027 4 134102434 to 134103053 619 CpG island CpG island 15027
Ubxn11 4 134102520 to 134126784 24264 + protein coding gene UBX domain protein 11
Tssr39527 4 134102581 to 134102610 29 + TSS region transcription start site region 39527
Tssr43865 4 134106892 to 134106893 1 - TSS region transcription start site region 43865
Tssr39528 4 134118089 to 134118110 21 + TSS region transcription start site region 39528
Tssr39529 4 134118114 to 134118122 8 + TSS region transcription start site region 39529
Tssr39530 4 134118488 to 134118503 15 + TSS region transcription start site region 39530
Tssr39531 4 134118589 to 134118605 16 + TSS region transcription start site region 39531
Tssr39532 4 134121819 to 134121835 16 + TSS region transcription start site region 39532
Tssr39533 4 134121842 to 134121860 18 + TSS region transcription start site region 39533
Tssr39534 4 134124510 to 134124558 48 + TSS region transcription start site region 39534
Sh3bgrl3 4 134127406 to 134128753 1347 - protein coding gene SH3 domain binding glutamic acid-rich protein-like 3
Tssr39535 4 134127535 to 134127605 70 + TSS region transcription start site region 39535
Tssr39536 4 134127618 to 134127715 97 + TSS region transcription start site region 39536
Tssr43866 4 134127627 to 134127686 59 - TSS region transcription start site region 43866
Tssr43867 4 134127687 to 134127720 33 - TSS region transcription start site region 43867
Tssr43868 4 134127723 to 134127791 68 - TSS region transcription start site region 43868
Tssr43869 4 134127798 to 134127811 13 - TSS region transcription start site region 43869
Tssr39537 4 134127908 to 134127966 58 + TSS region transcription start site region 39537
Tssr43870 4 134127951 to 134127973 22 - TSS region transcription start site region 43870
Tssr43871 4 134127999 to 134128023 24 - TSS region transcription start site region 43871
Tssr43872 4 134128029 to 134128050 21 - TSS region transcription start site region 43872
Tssr43873 4 134128052 to 134128076 24 - TSS region transcription start site region 43873
Tssr43874 4 134128082 to 134128091 9 - TSS region transcription start site region 43874
Cpgi15028 4 134128252 to 134129120 868 CpG island CpG island 15028
Tssr43875 4 134128680 to 134128700 20 - TSS region transcription start site region 43875
Tssr43876 4 134128707 to 134128770 63 - TSS region transcription start site region 43876
Tssr43877 4 134129604 to 134129611 7 - TSS region transcription start site region 43877
Cep85 4 134129858 to 134187085 57227 - protein coding gene centrosomal protein 85
Tssr43878 4 134154387 to 134154415 28 - TSS region transcription start site region 43878
Tssr43879 4 134154459 to 134154482 23 - TSS region transcription start site region 43879
Tssr43880 4 134156903 to 134156917 14 - TSS region transcription start site region 43880
Tssr43881 4 134156922 to 134156932 10 - TSS region transcription start site region 43881
Gm46894 4 134159957 to 134164109 4152 + protein coding gene predicted gene, 46894
Tssr39538 4 134160350 to 134160376 26 + TSS region transcription start site region 39538
Gm27619 4 134167808 to 134167895 87 - snoRNA gene predicted gene, 27619
Cpgi15029 4 134186301 to 134187496 1195 CpG island CpG island 15029
Tssr43882 4 134186992 to 134187006 14 - TSS region transcription start site region 43882
Tssr43883 4 134187019 to 134187090 71 - TSS region transcription start site region 43883
Gm7534 4 134190804 to 134203004 12200 - protein coding gene predicted gene 7534
Gm13131 4 134199830 to 134200150 320 - pseudogene predicted gene 13131
Catsper4 4 134211970 to 134227383 15413 - protein coding gene cation channel, sperm associated 4
Tssr43884 4 134227359 to 134227388 29 - TSS region transcription start site region 43884
Tssr43885 4 134227390 to 134227406 16 - TSS region transcription start site region 43885
Cnksr1 4 134228041 to 134238399 10358 - protein coding gene connector enhancer of kinase suppressor of Ras 1
Cpgi15030 4 134238100 to 134238564 464 CpG island CpG island 15030
Tssr43886 4 134238326 to 134238369 43 - TSS region transcription start site region 43886
Tssr43887 4 134238372 to 134238398 26 - TSS region transcription start site region 43887
Zfp593 4 134243306 to 134245591 2285 - protein coding gene zinc finger protein 593
Tssr39539 4 134243754 to 134243768 14 + TSS region transcription start site region 39539
E130218I03Rik 4 134243763 to 134245873 2110 + lncRNA gene RIKEN cDNA E130218I03 gene
Tssr39540 4 134244109 to 134244146 37 + TSS region transcription start site region 39540
Tssr39541 4 134244192 to 134244204 12 + TSS region transcription start site region 39541
Cpgi15031 4 134244961 to 134245841 880 CpG island CpG island 15031
Tssr43888 4 134245461 to 134245470 9 - TSS region transcription start site region 43888
Tssr43889 4 134245503 to 134245510 7 - TSS region transcription start site region 43889
Tssr43890 4 134245517 to 134245533 16 - TSS region transcription start site region 43890
Tssr43891 4 134245538 to 134245577 39 - TSS region transcription start site region 43891
Tssr43892 4 134245579 to 134245604 25 - TSS region transcription start site region 43892
Tssr39542 4 134246933 to 134246934 1 + TSS region transcription start site region 39542
Gm30191 4 134246935 to 134250042 3107 + protein coding gene predicted gene, 30191
Tssr39543 4 134246942 to 134246969 27 + TSS region transcription start site region 39543
Cpgi15032 4 134249524 to 134250128 604 CpG island CpG island 15032
Cpgi15033 4 134250687 to 134252404 1717 CpG island CpG island 15033
Grrp1 4 134251110 to 134254106 2996 - protein coding gene glycine/arginine rich protein 1
Tssr43893 4 134254076 to 134254128 52 - TSS region transcription start site region 43893
Gm42325 4 134255786 to 134265655 9869 + lncRNA gene predicted gene, 42325
Tssr39544 4 134268334 to 134268345 11 + TSS region transcription start site region 39544
Pdik1l 4 134275002 to 134287846 12844 - protein coding gene PDLIM1 interacting kinase 1 like
Cpgi15034 4 134286444 to 134288095 1651 CpG island CpG island 15034
Tssr43894 4 134287215 to 134287258 43 - TSS region transcription start site region 43894
D4Jcs21 4 134312212 to 134312548 336 DNA segment DNA segment, Chr 4, John C. Schimenti 21
Tssr39545 4 134315094 to 134315103 9 + TSS region transcription start site region 39545
Tssr39546 4 134315112 to 134315126 14 + TSS region transcription start site region 39546
Trim63 4 134315120 to 134329629 14509 + protein coding gene tripartite motif-containing 63
Tssr39547 4 134324897 to 134324910 13 + TSS region transcription start site region 39547
Gm13195 4 134335498 to 134335758 260 - pseudogene predicted gene 13195