Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:133703402-133923405

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64 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Arid1a 4 133679008 to 133753977 74969 - protein coding gene AT rich interactive domain 1A (SWI-like)
Mir7227 4 133717050 to 133717108 58 - miRNA gene microRNA 7227
Tssr43797 4 133720783 to 133720828 45 - TSS region transcription start site region 43797
Tssr43798 4 133720864 to 133720881 17 - TSS region transcription start site region 43798
Tssr43799 4 133720886 to 133720976 90 - TSS region transcription start site region 43799
Tssr43800 4 133722896 to 133722909 13 - TSS region transcription start site region 43800
Tssr43801 4 133722990 to 133723030 40 - TSS region transcription start site region 43801
Tssr43802 4 133723159 to 133723163 4 - TSS region transcription start site region 43802
Tssr43803 4 133751618 to 133751629 11 - TSS region transcription start site region 43803
Tssr39502 4 133751837 to 133751848 11 + TSS region transcription start site region 39502
Cpgi15015 4 133752049 to 133755024 2975 CpG island CpG island 15015
Tssr43804 4 133752704 to 133752756 52 - TSS region transcription start site region 43804
Tssr43805 4 133753030 to 133753044 14 - TSS region transcription start site region 43805
Tssr43806 4 133753616 to 133753666 50 - TSS region transcription start site region 43806
Tssr43807 4 133753860 to 133753869 9 - TSS region transcription start site region 43807
Tssr43808 4 133753915 to 133753926 11 - TSS region transcription start site region 43808
Tssr43809 4 133753961 to 133754019 58 - TSS region transcription start site region 43809
Tssr43810 4 133754222 to 133754237 15 - TSS region transcription start site region 43810
Tssr43811 4 133754260 to 133754297 37 - TSS region transcription start site region 43811
Tssr43812 4 133754299 to 133754316 17 - TSS region transcription start site region 43812
Tssr43813 4 133754322 to 133754378 56 - TSS region transcription start site region 43813
Tssr43814 4 133754397 to 133754408 11 - TSS region transcription start site region 43814
Cpgi15016 4 133756499 to 133757883 1384 CpG island CpG island 15016
Tssr43815 4 133756520 to 133756539 19 - TSS region transcription start site region 43815
Tssr43816 4 133756780 to 133756794 14 - TSS region transcription start site region 43816
Tssr43817 4 133757400 to 133757435 35 - TSS region transcription start site region 43817
Gm30019 4 133768128 to 133775447 7319 - lncRNA gene predicted gene, 30019
Gm29942 4 133774969 to 133781279 6310 + lncRNA gene predicted gene, 29942
D4Mit71 4 133785915 to 133786031 116 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 71
D4Dcr28 4 133785938 to 133786036 98 DNA segment DNA Segment, Chr 4, Derry C. Roopenian 28
Gm34296 4 133792037 to 133821546 29509 - lncRNA gene predicted gene, 34296
Gm25270 4 133797582 to 133797719 137 - snRNA gene predicted gene, 25270
Cpgi15017 4 133813135 to 133814792 1657 CpG island CpG island 15017
Tssr43818 4 133813294 to 133813305 11 - TSS region transcription start site region 43818
Tssr39503 4 133813402 to 133813405 3 + TSS region transcription start site region 39503
Tssr39504 4 133813534 to 133813561 27 + TSS region transcription start site region 39504
Tssr43819 4 133814106 to 133814134 28 - TSS region transcription start site region 43819
Tssr43820 4 133815805 to 133815816 11 - TSS region transcription start site region 43820
Tssr39505 4 133816248 to 133816254 6 + TSS region transcription start site region 39505
Tssr39506 4 133816281 to 133816293 12 + TSS region transcription start site region 39506
Gm12974 4 133816420 to 133817614 1194 + lincRNA gene predicted gene 12974
Tssr39507 4 133816474 to 133816490 16 + TSS region transcription start site region 39507
Rps6ka1 4 133847290 to 133887797 40507 - protein coding gene ribosomal protein S6 kinase polypeptide 1
Tssr43821 4 133865316 to 133865337 21 - TSS region transcription start site region 43821
Gm12977 4 133871830 to 133876533 4703 + antisense lncRNA gene predicted gene 12977
Tssr43822 4 133872304 to 133872346 42 - TSS region transcription start site region 43822
Tssr43823 4 133872997 to 133873044 47 - TSS region transcription start site region 43823
Tssr43824 4 133873048 to 133873061 13 - TSS region transcription start site region 43824
Tssr43825 4 133874658 to 133874669 11 - TSS region transcription start site region 43825
Tssr43826 4 133874682 to 133874722 40 - TSS region transcription start site region 43826
Tssr43827 4 133875228 to 133875239 11 - TSS region transcription start site region 43827
Tssr43828 4 133875260 to 133875274 14 - TSS region transcription start site region 43828
Gm12985 4 133882945 to 133883127 182 - pseudogene predicted gene 12985
Gm22523 4 133883399 to 133883498 99 - snRNA gene predicted gene, 22523
Cpgi15018 4 133887040 to 133888452 1412 CpG island CpG island 15018
Tssr43829 4 133887744 to 133887762 18 - TSS region transcription start site region 43829
Tssr43830 4 133887765 to 133887804 39 - TSS region transcription start site region 43830
Tssr43831 4 133887823 to 133887824 1 - TSS region transcription start site region 43831
Tssr43832 4 133899469 to 133899493 24 - TSS region transcription start site region 43832
Cpgi15019 4 133910454 to 133911296 842 CpG island CpG island 15019
4930429E23Rik 4 133910553 to 133911443 890 unclassified gene RIKEN cDNA 4930429E23 gene
Tssr43833 4 133910663 to 133910674 11 - TSS region transcription start site region 43833
Tssr43834 4 133910690 to 133910712 22 - TSS region transcription start site region 43834
Tssr43835 4 133910730 to 133910735 5 - TSS region transcription start site region 43835